mRNA_H-canaliculatus_F_contig11609.1416.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11609.1416.1
Unique NamemRNA_H-canaliculatus_F_contig11609.1416.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11609.1416.1 vs. uniprot
Match: A0A6H5JRM0_9PHAE (DOCKER domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM0_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.440e-39
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 IVYRRVVTLLSPIECSIDDIGSRIMTMRDEVQAGIDRASDTKGLTRLVQGSVLPQVNGGAVEVAETFLRALPPEEVSALP 240
            IVYRRVVTLLSPIECSIDDIGSRI+TMR+EVQAGIDRASDT+ LTRLVQGSVLPQVNGGAVEVAETFL+ALPPEE +ALP
Sbjct:    5 IVYRRVVTLLSPIECSIDDIGSRIVTMREEVQAGIDRASDTRCLTRLVQGSVLPQVNGGAVEVAETFLKALPPEEGNALP 84
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11609.1416.1 vs. uniprot
Match: D8LBY0_ECTSI (DOCKER domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY0_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 3.900e-27
Identity = 52/56 (92.86%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    4 VYRRVVTLLSPIECSIDDIGSRIMTMRDEVQAGIDRASDTKGLTRLVQGSVLPQVN 171
            VYRRVVTLLSPIECSIDDIGSRI+TMR+E+QAGIDRASDT+GLTRLVQGSVLPQVN
Sbjct:    2 VYRRVVTLLSPIECSIDDIGSRIVTMREEMQAGIDRASDTRGLTRLVQGSVLPQVN 57
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11609.1416.1 vs. uniprot
Match: A0A836CP73_9STRA (DOCKER domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP73_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.080e-13
Identity = 45/75 (60.00%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    4 VYRRVVTLLSPIECSIDDIGSRIMTMRDEVQAGIDRA--SDTKGLTRLVQGSVLPQVNGGAVEVAETFLRALPPE 222
            V  R V  LSPIECSIDDI +RI  MR+EV AGIDR   ++T+ L +LVQGSVLPQV   A E A   LRAL  E
Sbjct:    1 VAHRAVRFLSPIECSIDDIQTRIRVMREEVAAGIDRRKRNNTQNLMQLVQGSVLPQVCSMAPE-ASLLLRALQEE 74
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11609.1416.1 vs. uniprot
Match: A0A7R9U2A1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2A1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.070e-11
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    4 VYRRVVTLLSPIECSIDDIGSRIMTMRDEVQAGIDRASDTKGLTRLVQGSVLPQVNGGAVEVAETFL 204
            V RR   L+SPI+C++DD+  R + MR E+ A    A D + L RLV GSV+PQVNGGA+E+AE FL
Sbjct: 1837 VVRRRAILMSPIDCAVDDLSKRCVQMRMEL-AKPPTAVDKQALMRLVSGSVIPQVNGGAMEIAECFL 1902
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11609.1416.1 vs. uniprot
Match: A0A7S3H9U4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9U4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.240e-7
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    4 VYRRVVTLLSPIECSIDDIGSRIMTMRDEVQAGIDRASDTKGLTRLVQGSVLPQVNGGAVEVAETFL 204
            V  R +    PIE +I DI  RI  M  E++  +   SD   L R+VQG+V+PQVN G  EVA+ FL
Sbjct:    1 VQSREIRTYCPIEVAIYDIEERIEAMESELEKVVRNPSDCNNLMRIVQGTVMPQVNAGVGEVAKVFL 67
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11609.1416.1 vs. uniprot
Match: A0A0L0D3A0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D3A0_THETB)

HSP 1 Score: 50.1 bits (118), Expect = 6.910e-5
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   28 LSPIECSIDDIGSRIMTMRDEVQAGIDRASDTKGLTRLVQGSVLPQVNGGAVEVAETFL 204
            LSP+E  ++ I SR+  +R  V  G     + K L +L+QGSVL QVN GA+E+AE FL
Sbjct: 1987 LSPLENGVEAIASRVAGLRTAVGKG-----ELKVLLQLLQGSVLLQVNAGAIEIAEAFL 2040
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11609.1416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRM0_9PHAE1.440e-3991.25DOCKER domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LBY0_ECTSI3.900e-2792.86DOCKER domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836CP73_9STRA1.080e-1360.00DOCKER domain-containing protein (Fragment) n=1 Ta... [more]
A0A7R9U2A1_9STRA4.070e-1153.73Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3H9U4_9STRA5.240e-744.78Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0L0D3A0_THETB6.910e-547.46Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11609contigH-canaliculatus_F_contig11609:2374..2971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue3e-07
Seed eggNOG ortholog42099.EPrPV00000019028
Preferred nameDOCK3
KEGG koko:K03099,ko:K05727,ko:K06269,ko:K17697,ko:K20493,ko:K21852
KEGG Pathwayko01521,ko01522,ko03015,ko04010,ko04012,ko04013,ko04014,ko04015,ko04022,ko04024,ko04062,ko04068,ko04072,ko04113,ko04114,ko04150,ko04151,ko04218,ko04261,ko04270,ko04320,ko04390,ko04510,ko04540,ko04611,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04720,ko04722,ko04728,ko04750,ko04810,ko04910,ko04912,ko04915,ko04917,ko04921,ko04926,ko04931,ko05031,ko05034,ko05160,ko05165,ko05168,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map03015,map04010,map04012,map04013,map04014,map04015,map04022,map04024,map04062,map04068,map04072,map04113,map04114,map04150,map04151,map04218,map04261,map04270,map04320,map04390,map04510,map04540,map04611,map04630,map04650,map04660,map04662,map04664,map04714,map04720,map04722,map04728,map04750,map04810,map04910,map04912,map04915,map04917,map04921,map04926,map04931,map05031,map05034,map05160,map05165,map05168,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
EggNOG free text desc.Source PGD
EggNOG OGs1MDAU@121069,KOG1997@1,KOG1997@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03019,ko03021,ko03036,ko03041,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDedicator of cytokinesis C-terminal
Ec32 orthologEc-20_003700.1
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.4447286-CDS-H-canaliculatus_F_contig11609:2373..25381622928852.4447286-CDS-H-canaliculatus_F_contig11609:2373..2538Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11609 2374..2538 +
1696845588.9942179-CDS-H-canaliculatus_F_contig11609:2373..25381696845588.9942179-CDS-H-canaliculatus_F_contig11609:2373..2538Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11609 2374..2538 +
1622928852.4608786-CDS-H-canaliculatus_F_contig11609:2845..29711622928852.4608786-CDS-H-canaliculatus_F_contig11609:2845..2971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11609 2846..2971 +
1696845589.0101738-CDS-H-canaliculatus_F_contig11609:2845..29711696845589.0101738-CDS-H-canaliculatus_F_contig11609:2845..2971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11609 2846..2971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11609.1416.1prot_H-canaliculatus_F_contig11609.1416.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11609 2374..2971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11609.1416.1

>prot_H-canaliculatus_F_contig11609.1416.1 ID=prot_H-canaliculatus_F_contig11609.1416.1|Name=mRNA_H-canaliculatus_F_contig11609.1416.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
IVYRRVVTLLSPIECSIDDIGSRIMTMRDEVQAGIDRASDTKGLTRLVQG
SVLPQVNGGAVEVAETFLRALPPEEVSALPPTAPTAQAVPARGGGGG
back to top

mRNA from alignment at H-canaliculatus_F_contig11609:2374..2971+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11609.1416.1 ID=mRNA_H-canaliculatus_F_contig11609.1416.1|Name=mRNA_H-canaliculatus_F_contig11609.1416.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=598bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11609:2374..2971+ (Hapterophycus canaliculatus Oshoro5f female)
ATCGTTTACCGGAGAGTGGTGACGCTTCTGTCCCCGATAGAGTGCTCCAT
CGACGACATCGGCTCGAGGATCATGACCATGAGAGACGAGGTCCAGGCAG
GGATCGATCGCGCCAGCGACACCAAGGGGCTGACCAGGCTGGTCCAGGGG
AGCGTCCTCCCGCAGGTGCGTTGTTTTAGAGGGCAATGTCGCTGCCTTAT
CTTTTTGCTGTCGCTGCCGCTGTCGCTGCCGCTGTCGCTGTTACTCAAGG
TTCCGCGGTGTTTGTCACTCAAGGTTCCGCGGTCGTTGTTGGCGCCATCC
TAGTCTTCGTGCCGCTTCGTCCCATCCCGGCTATCCTCGCCTCACGTAAC
CCTTTCCGAGGCAAAAGGAAATGCTTTGGAATGAAAGCCCCAACCTTTCA
ACCCACCAATCCCATTGCCTCTCTAACCTTGTCCGCCGCCTCCGCGGCGC
ACTGTCGGTCTCACAAAAACAGGTCAACGGCGGGGCGGTAGAGGTAGCGG
AAACGTTTCTGAGGGCGTTACCGCCCGAGGAAGTGAGCGCCCTCCCGCCA
ACAGCGCCGACAGCGCAAGCTGTCCCCGCCAGGGGCGGCGGCGGGGGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11609:2374..2971+

>mRNA_H-canaliculatus_F_contig11609.1416.1 ID=mRNA_H-canaliculatus_F_contig11609.1416.1|Name=mRNA_H-canaliculatus_F_contig11609.1416.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11609:2374..2971+ (Hapterophycus canaliculatus Oshoro5f female)
ATCGTTTACCGGAGAGTGGTGACGCTTCTGTCCCCGATAGAGTGCTCCAT
CGACGACATCGGCTCGAGGATCATGACCATGAGAGACGAGGTCCAGGCAG
GGATCGATCGCGCCAGCGACACCAAGGGGCTGACCAGGCTGGTCCAGGGG
AGCGTCCTCCCGCAGATCGTTTACCGGAGAGTGGTGACGCTTCTGTCCCC
GATAGAGTGCTCCATCGACGACATCGGCTCGAGGATCATGACCATGAGAG
ACGAGGTCCAGGCAGGGATCGATCGCGCCAGCGACACCAAGGGGCTGACC
AGGCTGGTCCAGGGGAGCGTCCTCCCGCAGGTCAACGGCGGGGCGGTAGA
GGTAGCGGAAACGTTTCTGAGGGCGTTACCGCCCGAGGAAGTGAGCGCCC
TCCCGCCAACAGCGCCGACAGCGCAAGCTGTCCCCGCCAGGGGCGGCGGC
GGGGGCGTCAACGGCGGGGCGGTAGAGGTAGCGGAAACGTTTCTGAGGGC
GTTACCGCCCGAGGAAGTGAGCGCCCTCCCGCCAACAGCGCCGACAGCGC
AAGCTGTCCCCGCCAGGGGCGGCGGCGGGGGC
back to top