mRNA_H-canaliculatus_F_contig11600.1411.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11600.1411.1
Unique NamemRNA_H-canaliculatus_F_contig11600.1411.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11600.1411.1 vs. uniprot
Match: D8LEE1_ECTSI (NADH:ubiquinone oxidoreductase complex I n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE1_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-17
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 TNAVLVLGGTGKTGQRVVEALLKEGRDVVVASRNEESAAALYDASTPGLF 150
            T+AVLVLGGTGKTGQ+VVEALLK+ RDVVVASR++ESAA LYDASTPGLF
Sbjct:   93 TDAVLVLGGTGKTGQKVVEALLKQKRDVVVASRSKESAAELYDASTPGLF 142
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BLAST of mRNA_H-canaliculatus_F_contig11600.1411.1 vs. uniprot
Match: UPI00197A99C5 (NmrA family NAD(P)-binding protein n=1 Tax=Fulvivirga lutea TaxID=2810512 RepID=UPI00197A99C5)

HSP 1 Score: 48.1 bits (113), Expect = 4.660e-5
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 TNAVLVLGGTGKTGQRVVEALLKEGRDVVVASRNEESAAALYDAST 138
            T+ +LV+GGTGKTG RVVE L K G DV + SRN   A    D ST
Sbjct:    2 THNILVIGGTGKTGSRVVENLTKLGHDVTIGSRNGSPAFDWDDPST 47
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BLAST of mRNA_H-canaliculatus_F_contig11600.1411.1 vs. uniprot
Match: UPI001E6458E8 (NAD(P)H-binding protein n=1 Tax=Siphonobacter sp. BAB-5405 TaxID=1864825 RepID=UPI001E6458E8)

HSP 1 Score: 46.6 bits (109), Expect = 7.260e-5
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 TNAVLVLGGTGKTGQRVVEALLKEGRDVVVASRNEESAAALYDAST 138
            +N +LVLGGTGKTG R+VE L  +G  V + SR+ + A   YD +T
Sbjct:    4 SNPILVLGGTGKTGHRIVERLQNQGFPVRIGSRHNQPAFDWYDPTT 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11600.1411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEE1_ECTSI1.170e-1786.00NADH:ubiquinone oxidoreductase complex I n=2 Tax=E... [more]
UPI00197A99C54.660e-556.52NmrA family NAD(P)-binding protein n=1 Tax=Fulvivi... [more]
UPI001E6458E87.260e-550.00NAD(P)H-binding protein n=1 Tax=Siphonobacter sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11600contigH-canaliculatus_F_contig11600:143..292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D8LEE1
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.0051668-CDS-H-canaliculatus_F_contig11600:142..2921622928852.0051668-CDS-H-canaliculatus_F_contig11600:142..292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11600 143..292 -
1696845588.8129988-CDS-H-canaliculatus_F_contig11600:142..2921696845588.8129988-CDS-H-canaliculatus_F_contig11600:142..292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11600 143..292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11600.1411.1prot_H-canaliculatus_F_contig11600.1411.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11600 143..292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11600.1411.1

>prot_H-canaliculatus_F_contig11600.1411.1 ID=prot_H-canaliculatus_F_contig11600.1411.1|Name=mRNA_H-canaliculatus_F_contig11600.1411.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=50bp
TNAVLVLGGTGKTGQRVVEALLKEGRDVVVASRNEESAAALYDASTPGLF
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mRNA from alignment at H-canaliculatus_F_contig11600:143..292-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11600.1411.1 ID=mRNA_H-canaliculatus_F_contig11600.1411.1|Name=mRNA_H-canaliculatus_F_contig11600.1411.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=150bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11600:143..292- (Hapterophycus canaliculatus Oshoro5f female)
ACAAACGCGGTCCTGGTTCTGGGCGGCACGGGCAAGACCGGGCAAAGGGT
GGTGGAGGCTCTCCTGAAGGAGGGGCGGGATGTCGTGGTGGCGTCGCGGA
ACGAGGAGTCCGCCGCGGCGCTGTACGACGCGTCCACTCCGGGGCTTTTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11600:143..292-

>mRNA_H-canaliculatus_F_contig11600.1411.1 ID=mRNA_H-canaliculatus_F_contig11600.1411.1|Name=mRNA_H-canaliculatus_F_contig11600.1411.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=300bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11600:143..292- (Hapterophycus canaliculatus Oshoro5f female)
ACAAACGCGGTCCTGGTTCTGGGCGGCACGGGCAAGACCGGGCAAAGGGT
GGTGGAGGCTCTCCTGAAGGAGGGGCGGGATGTCGTGGTGGCGTCGCGGA
ACGAGGAGTCCGCCGCGGCGCTGTACGACGCGTCCACTCCGGGGCTTTTT
ACAAACGCGGTCCTGGTTCTGGGCGGCACGGGCAAGACCGGGCAAAGGGT
GGTGGAGGCTCTCCTGAAGGAGGGGCGGGATGTCGTGGTGGCGTCGCGGA
ACGAGGAGTCCGCCGCGGCGCTGTACGACGCGTCCACTCCGGGGCTTTTT
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