mRNA_H-canaliculatus_F_contig1160.1410.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1160.1410.1
Unique NamemRNA_H-canaliculatus_F_contig1160.1410.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1160.1410.1 vs. uniprot
Match: D7G4G8_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G8_ECTSI)

HSP 1 Score: 362 bits (930), Expect = 2.650e-119
Identity = 198/354 (55.93%), Postives = 242/354 (68.36%), Query Frame = 1 
Query:  145 EAAVVRLTEEVAATHGAAAAYPMSPAI----TRHQGRSGIAEGSP--PDFMAIYGTWKPLECQKHLLRRMHQAFAQKFRAAKDALAPGSDILHVEEQIGRGSFGGVHKAVCSATGEMWAIKKPVKEADKEVLIYEILVYRRLPAHPNILRVHSMYDCLSSPALALECGKCDFNRALANGLMSFADELECMADVAEGTGHCHDNGIVVCDLKPSNVILVHNGARYVGKVADFGLAYGIGQTRGARCGTPGYFPPEVAFLPTLAEPSTDAVSVGAMLAIVALLTSKRESNVFAHRMFRTPAENVQLEQWAQMGSGGVRDLLMTITIRTMQLPEHGFAKKVTRPSLLNKMPGSSMVS 1188
            EAA+ RL EE  A   +AA  P+  +I    T  Q     A+GSP  P    +   W+  +C+   + RM   F  + RAA+DALAPGS +L  EE++G G+FGGV+KAVC AT   WAIK+P+KE DKE LI+E+LVY  LPAH NIL V ++YD   SPALALECG+CD   AL  G +SF DEL+C+ADV  GT HC+DNG+V+CDLK SN+ILVHNGARYV KV+DFGL+  IG  R  RCGTPGYFP EV+   T+AEPSTDA SVGAMLAI+AL    RE NVF H+MF TP E +QL Q AQ      R+    I  RTM LP  GFAKKVTRP+++N MPG+ +VS
Sbjct:   97 EAAMARLAEE--AVERSAAGPPLMSSIGALATAPQQE---AQGSPATPRLADLMRNWQQNKCRDAFVARMRDGFKLQLRAARDALAPGSGMLGAEEELGHGTFGGVYKAVCDATKTTWAIKRPMKEMDKEFLIHEMLVYSSLPAHANILGVRAIYDISHSPALALECGECDMFDALFGGRLSFPDELDCLADVVAGTRHCNDNGVVLCDLKFSNIILVHNGARYVAKVSDFGLSCAIGHNRYPRCGTPGYFPHEVSLEHTVAEPSTDAFSVGAMLAILALQPKLREENVFCHKMFLTPEEALQLPQLAQAEFDSYRERQEEIAYRTMLLPNSGFAKKVTRPAVVNTMPGTQLVS 445
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BLAST of mRNA_H-canaliculatus_F_contig1160.1410.1 vs. uniprot
Match: D7G236_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G236_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 2.310e-114
Identity = 198/354 (55.93%), Postives = 242/354 (68.36%), Query Frame = 1 
Query:  145 EAAVVRLTEEVAATHGAAAAYPMSPAI----TRHQGRSGIAEGSP--PDFMAIYGTWKPLECQKHLLRRMHQAFAQKFRAAKDALAPGSDILHVEEQIGRGSFGGVHKAVCSATGEMWAIKKPVKEADKEVLIYEILVYRRLPAHPNILRVHSMYDCLSSPALALECGKCDFNRALANGLMSFADELECMADVAEGTGHCHDNGIVVCDLKPSNVILVHNGARYVGKVADFGLAYGIGQTRGARCGTPGYFPPEVAFLPTLAEPSTDAVSVGAMLAIVALLTSKRESNVFAHRMFRTPAENVQLEQWAQMGSGGVRDLLMTITIRTMQLPEHGFAKKVTRPSLLNKMPGSSMVS 1188
            EAA+ RL EE  A   +AA  P+  +I    T  Q     A+GSP  P    +   W+  +C+   + RM   F  + RAA+DALAPGS +L  EE++G G+FGGV+KAVC AT   WAIK+P+KE DKE LI+E+LVY  LPAH NIL V ++YD  SSPALALECG+CD   AL  G +SF DEL+C+ADV  GT HC+DNG+V+CDLK SNVILVHNGARYV KV+DFGL+  IG  R  RCGTPGYFP EV+   T+AEPSTDA SVGAMLAI+AL    RE NVF H+MF TP E +QL Q AQ      R+    I  RTM LP  GFAKKVTRP+++N MPG+ + +
Sbjct:   97 EAAMARLAEE--AVERSAAGPPLMSSIGALATAPQQE---AQGSPATPRLADLMRNWQQNKCRDAFVARMRDGFKLQLRAARDALAPGSGMLGAEEELGHGTFGGVYKAVCDATKTTWAIKRPMKEMDKEFLIHEMLVYSSLPAHTNILGVRAIYDISSSPALALECGECDMFDALFGGRLSFPDELDCLADVVAGTRHCNDNGVVLCDLKFSNVILVHNGARYVAKVSDFGLSCAIGHNRYPRCGTPGYFPHEVSLEHTVAEPSTDAFSVGAMLAILALQPKLREENVFCHKMFLTPEEALQLPQLAQAEFDSYRERQEEIAYRTMLLPNSGFAKKVTRPAVVNTMPGTQLTN 445
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BLAST of mRNA_H-canaliculatus_F_contig1160.1410.1 vs. uniprot
Match: H9C880_ACACA (Protein kinase C4 (Fragment) n=1 Tax=Acanthamoeba castellanii TaxID=5755 RepID=H9C880_ACACA)

HSP 1 Score: 87.4 bits (215), Expect = 2.110e-15
Identity = 63/201 (31.34%), Postives = 102/201 (50.75%), Query Frame = 1 
Query:  385 PGSDILHVEEQIGRGSFGGVHKAVCSATGEMWAIK----KPVKEADKEVLIYEILVYRRLPAHPNILRVHSMYDCLSSPALALEC--GKCDFNRALANGLMSFADELECMADVAEGTGHCHDNGIVVCDLKPSNVILVHNGARYVGKVADFGLAYGI---GQTRGARCGTPGYFPPEVAFLPTLAEPSTDAVSVGAMLAIV 960
            P  D   + E+IG+G F  V+KAV  +    +A+K    K V+  D ++L  EI + ++L  HPNIL+++ +Y+      L +E   GK  F++ +  G+ S  D    +  V     + H+NGI   DLKP N++        + K+ADFG +      G+     CG+PGY  PE+    +  + S D  SVG ++ I+
Sbjct:   77 PIEDHYELGEEIGKGGFSVVYKAVRKSDHAEFAVKCIKKKMVEGDDIKLLRREIQIMKKLN-HPNILKLYEVYEDDEQFYLVMELVKGKELFDKIVERGMYSERDAANIILQVVSAVRYLHENGIAHRDLKPENLLSAGEEENEIVKIADFGFSKSFADEGEKLMTSCGSPGYVAPEILTAESY-DKSVDMWSVGVIIYIL 275
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BLAST of mRNA_H-canaliculatus_F_contig1160.1410.1 vs. uniprot
Match: D6RVR8_BOMMO (Calcium/calmodulin-dependent protein kinase n=41 Tax=Heteroneura TaxID=41197 RepID=D6RVR8_BOMMO)

HSP 1 Score: 88.2 bits (217), Expect = 2.720e-15
Identity = 63/184 (34.24%), Postives = 89/184 (48.37%), Query Frame = 1 
Query:  391 SDILHVEEQIGRGSFGGVHKAVCSATGEMWAIK----KPVKEADKEVLIYEILVYRRLPAHPNILRVHS----------MYDCLSSPALALECGKCDFNRALANGLMSFADELECMADVAEGTGHCHDNGIVVCDLKPSNVILVHNGARYVGKVADFGLAY---GIGQTRGARCGTPGYFPPEV 891
            SD   ++E++G+G+F  V +AV  +TG  +A K    K +   D + L  E  + R+L  HPNI+R+H           ++D ++   L        F   +A    S AD   C+  + E   HCH NG+V  DLKP N++L         K+ADFGLA    G  Q      GTPGY  PEV
Sbjct:   14 SDNYELKEELGKGAFSIVRRAVQKSTGYEFAAKIINTKKLSARDFQKLEREARICRKLQ-HPNIVRLHDSIQEEHCHYLVFDLVTGGEL--------FEDIVAREFYSEADASHCIQQILESVHHCHHNGVVHRDLKPENLLLASKAKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEV 188
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BLAST of mRNA_H-canaliculatus_F_contig1160.1410.1 vs. uniprot
Match: UPI00193A869C (titin-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A869C)

HSP 1 Score: 88.2 bits (217), Expect = 5.990e-15
Identity = 69/217 (31.80%), Postives = 112/217 (51.61%), Query Frame = 1 
Query:  352 QKFRAAKDALAPGSDIL---HVEEQIGRGSFGGVHKAVCSATGEMWAIK--KPVKEADKEVLIYEILVYRRLPAHPNILRVHSMYDCLSSPALALE-CGKCDFNRALANGLMSFADELEC--MADVAEGTGHCHDNGIVVCDLKPSNVILVHNGARYVGKVADFGLAYGIGQTRGARC--GTPGYFPPEVAFLPTLAEPSTDAVSVGAMLAIVALLT 972
            +KF   +  +   S++L    + E++GRG+FG VH+A   ATG++WA K  K V E+DK  L  E+ + RRL  HP IL++H ++D     A+ ++     D    + N      + +    +  + E   + H   I   D+KP NV+ V   ++ + K+ DFG++  +    G R   GTP +  PEV    T+ +P TD  S+G++    ALLT
Sbjct: 24453 EKFTPYEPQMNVDSNLLDKYQIMEELGRGTFGVVHRAKEIATGKIWAAKLIKVVDESDKVPLRREVEIMRRLQ-HPKILQLHEVFDNKREMAMIIQFVSGGDLFERIINLRFDLTENIAAYFVKQICEAMTYMHSQNIAHLDIKPENVLFVTQKSKKL-KIIDFGVSRELKPGEGLRIAFGTPDFCAPEVVLNDTVGKP-TDMWSLGSLT--YALLT 24664
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BLAST of mRNA_H-canaliculatus_F_contig1160.1410.1 vs. uniprot
Match: A0A2P6R5L5_ROSCH (Protein kinase domain-containing protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6R5L5_ROSCH)

HSP 1 Score: 82.4 bits (202), Expect = 3.980e-14
Identity = 66/197 (33.50%), Postives = 93/197 (47.21%), Query Frame = 1 
Query:  394 DILHVEEQIGRGSFGGVHKAVCSATGEMWAIKKPVK-----EADKEVLIYEILVYRRLPAHPNILRVHSMYDCLSSPALALE-CGKCDFNRALANGLMSFADELECMADVAEGTGHCHDNGIVVCDLKPSNVILVHNGARYVGKVADFGLAY--GIGQTRGARCGTPGYFPPEVAFLPTLAEPSTDAVSVGAMLAIV 960
            D   + E+IGRG FG + +A C  + E  A+K   K     E D+  L  E  +   L  HPNIL++H++++   S A+ LE C        +A+  +   +    M  +     HCH  G+V  DLKP NV+     +R   K+ADFG A   G G +     GTP Y  PEV  +  L     D  S G ML I+
Sbjct:    7 DTYQLFEEIGRGRFGTILRAFCPVSAESVAVKIIDKSLLTDETDRACLEKEPKIMTLLSPHPNILKIHNVFETEDSMAMVLELCEPETLYDKIAHRPLPEPEAAGLMKQLLGAIAHCHRMGVVHRDLKPENVLF---DSRNNLKLADFGSAEWSGEGGSMEGVVGTPYYVAPEV-LMGRLYNEKVDVWSAGVMLYIM 199
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BLAST of mRNA_H-canaliculatus_F_contig1160.1410.1 vs. uniprot
Match: A0A0B7BSV9_9EUPU (Uncharacterized protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BSV9_9EUPU)

HSP 1 Score: 81.6 bits (200), Expect = 6.920e-13
Identity = 61/183 (33.33%), Postives = 98/183 (53.55%), Query Frame = 1 
Query:  412 EQIGRGSFGGVHKAVCSATGEMWAIKK-PVKEADKEVLIYEILVYRRLPAHPNILRVHSMYDCLSSPALALEC--GKCDFNRALANGL-MSFADELECMADVAEGTGHCHDNGIVVCDLKPSNVILVHNGARYVGKVADFGLAYGIGQTRGARC--GTPGYFPPEVAFLPTLAEPSTDAVSVG 942
            E++GRG+FG VH+AV  ATG+ WA K    +  DK+V+ +EI +  RL  HP +L++H  +D      + LE   G   F+R +     ++  D +  M  + EG  H H + ++  DLKP N++ V   +  V K+ DFGLA  + + +  +   GT  +  PE+     ++  STD  S+G
Sbjct:  304 EELGRGAFGVVHRAVERATGKNWAAKFIHCRPQDKDVIRHEIDIMNRLH-HPKLLQLHEAFDQRGEMVMILELLSGGELFDRLVEKEYTLTEEDCITYMKQICEGVQHMHHSSVLHLDLKPENIMCVTKESNDV-KIIDFGLAQRLEEGKSVKVLFGTAEFCAPEIINYEPVSF-STDMWSLG 483
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BLAST of mRNA_H-canaliculatus_F_contig1160.1410.1 vs. uniprot
Match: A0A1U8Q731_NELNU (calcium-dependent protein kinase 8-like isoform X1 n=5 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8Q731_NELNU)

HSP 1 Score: 80.5 bits (197), Expect = 1.070e-12
Identity = 66/205 (32.20%), Postives = 96/205 (46.83%), Query Frame = 1 
Query:  388 GSDIL---HVEEQIGRGSFGGVHKAVCSATGEMWAIKKPVK-----EADKEVLIYEILVYRRLPAHPNILRVHSMYDCLSSPALALECGKCD----FNRALANGLMSFADELECMADVAEGTGHCHDNGIVVCDLKPSNVILVHNGARYVGKVADFGLA--YGIGQTRGARCGTPGYFPPEVAFLPTLAEPSTDAVSVGAMLAIV 960
            G+DIL   H+  ++GRG FG   + V   TGE  A K   K     E D E +  E+ + RRLP HPN++R+   Y+   +  L +E   C+    F+R +A G  +          + E    CH++G++  DLKP N +        V +  DFGL+  +  GQ      G+P Y  PEV  L     P  D  S G +L I+
Sbjct:   56 GNDILKRYHLGSELGRGEFGITRQCVDIETGEKLACKTISKNKLRSEIDVEDVRREVEIMRRLPVHPNVVRLKESYEDEEAVHLVMEL--CEGGELFDRIVARGHYTEGAAAVVTKTIIEVVQMCHNHGVMHRDLKPENFLFTDRTEDSVLRAIDFGLSIFFEPGQRFNEIVGSPFYMAPEV--LRRNYGPEVDIWSAGVILYIL 256
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BLAST of mRNA_H-canaliculatus_F_contig1160.1410.1 vs. uniprot
Match: UPI001C922961 (titin homolog isoform X3 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C922961)

HSP 1 Score: 80.9 bits (198), Expect = 1.270e-12
Identity = 62/197 (31.47%), Postives = 100/197 (50.76%), Query Frame = 1 
Query:  397 ILHVEEQIGRGSFGGVHKAVCSATGEMWAIK--KPVKEADKEVLIYEILVYRRLPAHPNILRVHSMYDCLSSPALALE--CGKCDFNRALANGLMSFADELEC---MADVAEGTGHCHDNGIVVCDLKPSNVILVHNGARYVGKVADFGLAYGIGQTRGARC--GTPGYFPPEVAFLPTLAEPSTDAVSVGAMLAIV 960
            +  V+E++G+G FG VHK V  +TG  +A K  K +K AD+  +  EI +  +L  HP +L++ +  D      + LE   G   F R +A+       E EC   M  +  G  + HDN I+  D+KP N++ +   +  + K+ DFGLA    ++   R   GTP + PPE+     +  P +D  S+G +  I+
Sbjct: 1792 LYDVQEELGKGRFGMVHKVVERSTGNRFAAKFIKCIKLADRAKVGEEIAIMNQLD-HPKLLQLAAAIDHGRQMIMLLEYVSGGELFERVVADDFT--LTEHECVLFMQQICSGVRYMHDNNIMHLDMKPENILCITKSSHMI-KIIDFGLARQYRESEPTRVMLGTPEFIPPEIINFEPI-SPRSDMWSLGVICYIL 1983
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BLAST of mRNA_H-canaliculatus_F_contig1160.1410.1 vs. uniprot
Match: A0A7J7PBR0_9MAGN (Protein kinase domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7PBR0_9MAGN)

HSP 1 Score: 80.5 bits (197), Expect = 1.480e-12
Identity = 62/173 (35.84%), Postives = 86/173 (49.71%), Query Frame = 1 
Query:  403 HVEEQIGRGSFGGVHKAVCSATGEMWAIKKPVKEADKEVLIYEILVYRRLPAHPNILRVHSMYDCLSSPALALE-CGKCDFNRALANGLMSFADELECMA-DVAEGTGHCHDNGIVVCDLKPSNVILVHNGARYVGKVADFGLAYGIG--------QTRGARCGTPGYFPPEV 891
            H+ E IGRG +  V+KA    T E +A K  V ++ K  ++ EI V   L  HPN+LR ++ Y+  +   L LE C   D    L        D +  +A D+ +     H NGI+ CDLKPSN++L  NG     K+ DFGLA  +         Q   A+ GTP Y  PE+
Sbjct:    5 HIYEAIGRGKYSTVYKARKKKTIEYFACKS-VDKSQKPKVLQEIRVLHSLE-HPNVLRFYAWYETSAHLWLVLEYCVGGDLMTLLGQDGQLPEDSVHDLARDLLKALQFLHSNGIIYCDLKPSNILLDENGRT---KLCDFGLARRLSDISKTPSSQLPQAKRGTPCYMAPEL 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1160.1410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4G8_ECTSI2.650e-11955.93Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
D7G236_ECTSI2.310e-11455.93Protein kinase domain-containing protein n=1 Tax=E... [more]
H9C880_ACACA2.110e-1531.34Protein kinase C4 (Fragment) n=1 Tax=Acanthamoeba ... [more]
D6RVR8_BOMMO2.720e-1534.24Calcium/calmodulin-dependent protein kinase n=41 T... [more]
UPI00193A869C5.990e-1531.80titin-like n=1 Tax=Styela clava TaxID=7725 RepID=U... [more]
A0A2P6R5L5_ROSCH3.980e-1433.50Protein kinase domain-containing protein n=2 Tax=R... [more]
A0A0B7BSV9_9EUPU6.920e-1333.33Uncharacterized protein n=1 Tax=Arion vulgaris Tax... [more]
A0A1U8Q731_NELNU1.070e-1232.20calcium-dependent protein kinase 8-like isoform X1... [more]
UPI001C9229611.270e-1231.47titin homolog isoform X3 n=1 Tax=Amphibalanus amph... [more]
A0A7J7PBR0_9MAGN1.480e-1235.84Protein kinase domain-containing protein n=1 Tax=K... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1160contigH-canaliculatus_F_contig1160:10989..15694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.1
Seed ortholog evalue1e-98
Seed eggNOG ortholog2880.D7G4G8
Preferred nameUHMK1
KEGG koko:K08829,ko:K08877
GOsGO:0000166,GO:0000243,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005794,GO:0006417,GO:0006446,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007049,GO:0007050,GO:0007275,GO:0007399,GO:0008144,GO:0008150,GO:0008152,GO:0008187,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0012505,GO:0016043,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022402,GO:0030030,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030554,GO:0030628,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032386,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032838,GO:0032839,GO:0032879,GO:0032880,GO:0032991,GO:0033157,GO:0034248,GO:0034250,GO:0035639,GO:0035770,GO:0036002,GO:0036094,GO:0036211,GO:0036464,GO:0036477,GO:0042995,GO:0043005,GO:0043021,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044877,GO:0045727,GO:0045786,GO:0045948,GO:0046777,GO:0046822,GO:0046825,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051049,GO:0051171,GO:0051173,GO:0051223,GO:0051246,GO:0051247,GO:0051726,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0071004,GO:0071010,GO:0071598,GO:0071704,GO:0071840,GO:0080090,GO:0089701,GO:0090087,GO:0097159,GO:0097367,GO:0097447,GO:0097458,GO:0099568,GO:0120025,GO:0120036,GO:0120038,GO:0120111,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903827,GO:1990904,GO:2000112
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1,2.7.11.22
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons8
Model size1188
Cds size1188
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1160.1410.1prot_H-canaliculatus_F_contig1160.1410.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1160 10989..15694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928851.2763853-CDS-H-canaliculatus_F_contig1160:10988..110931622928851.2763853-CDS-H-canaliculatus_F_contig1160:10988..11093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 10989..11093 -
1696845588.6532323-CDS-H-canaliculatus_F_contig1160:10988..110931696845588.6532323-CDS-H-canaliculatus_F_contig1160:10988..11093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 10989..11093 -
1622928851.2892435-CDS-H-canaliculatus_F_contig1160:11617..116951622928851.2892435-CDS-H-canaliculatus_F_contig1160:11617..11695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 11618..11695 -
1696845588.665076-CDS-H-canaliculatus_F_contig1160:11617..116951696845588.665076-CDS-H-canaliculatus_F_contig1160:11617..11695Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 11618..11695 -
1622928851.300001-CDS-H-canaliculatus_F_contig1160:12054..122271622928851.300001-CDS-H-canaliculatus_F_contig1160:12054..12227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 12055..12227 -
1696845588.675897-CDS-H-canaliculatus_F_contig1160:12054..122271696845588.675897-CDS-H-canaliculatus_F_contig1160:12054..12227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 12055..12227 -
1622928851.8344235-CDS-H-canaliculatus_F_contig1160:12755..128981622928851.8344235-CDS-H-canaliculatus_F_contig1160:12755..12898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 12756..12898 -
1696845588.6865904-CDS-H-canaliculatus_F_contig1160:12755..128981696845588.6865904-CDS-H-canaliculatus_F_contig1160:12755..12898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 12756..12898 -
1622928851.8496404-CDS-H-canaliculatus_F_contig1160:13210..133511622928851.8496404-CDS-H-canaliculatus_F_contig1160:13210..13351Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 13211..13351 -
1696845588.6948192-CDS-H-canaliculatus_F_contig1160:13210..133511696845588.6948192-CDS-H-canaliculatus_F_contig1160:13210..13351Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 13211..13351 -
1622928851.8615916-CDS-H-canaliculatus_F_contig1160:14242..142891622928851.8615916-CDS-H-canaliculatus_F_contig1160:14242..14289Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 14243..14289 -
1696845588.702779-CDS-H-canaliculatus_F_contig1160:14242..142891696845588.702779-CDS-H-canaliculatus_F_contig1160:14242..14289Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 14243..14289 -
1622928851.8735313-CDS-H-canaliculatus_F_contig1160:14801..151551622928851.8735313-CDS-H-canaliculatus_F_contig1160:14801..15155Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 14802..15155 -
1696845588.7443402-CDS-H-canaliculatus_F_contig1160:14801..151551696845588.7443402-CDS-H-canaliculatus_F_contig1160:14801..15155Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 14802..15155 -
1622928851.884257-CDS-H-canaliculatus_F_contig1160:15547..156941622928851.884257-CDS-H-canaliculatus_F_contig1160:15547..15694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 15548..15694 -
1696845588.7999713-CDS-H-canaliculatus_F_contig1160:15547..156941696845588.7999713-CDS-H-canaliculatus_F_contig1160:15547..15694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1160 15548..15694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1160.1410.1

>prot_H-canaliculatus_F_contig1160.1410.1 ID=prot_H-canaliculatus_F_contig1160.1410.1|Name=mRNA_H-canaliculatus_F_contig1160.1410.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=396bp
GQLEAALSRATAAEDKARVADEFRHVAEERTRLAEESARAAEEKARVAEA
AVVRLTEEVAATHGAAAAYPMSPAITRHQGRSGIAEGSPPDFMAIYGTWK
PLECQKHLLRRMHQAFAQKFRAAKDALAPGSDILHVEEQIGRGSFGGVHK
AVCSATGEMWAIKKPVKEADKEVLIYEILVYRRLPAHPNILRVHSMYDCL
SSPALALECGKCDFNRALANGLMSFADELECMADVAEGTGHCHDNGIVVC
DLKPSNVILVHNGARYVGKVADFGLAYGIGQTRGARCGTPGYFPPEVAFL
PTLAEPSTDAVSVGAMLAIVALLTSKRESNVFAHRMFRTPAENVQLEQWA
QMGSGGVRDLLMTITIRTMQLPEHGFAKKVTRPSLLNKMPGSSMVS
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mRNA from alignment at H-canaliculatus_F_contig1160:10989..15694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1160.1410.1 ID=mRNA_H-canaliculatus_F_contig1160.1410.1|Name=mRNA_H-canaliculatus_F_contig1160.1410.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4706bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1160:10989..15694- (Hapterophycus canaliculatus Oshoro5f female)
GGACAGCTCGAGGCCGCCCTCAGCAGAGCGACCGCGGCGGAAGACAAGGC
AAGGGTTGCCGACGAGTTCAGACACGTGGCTGAAGAGAGGACCAGGTTGG
CCGAAGAGTCGGCACGGGCGGCCGAAGAGAAAGCGAGGGTGGCCGAGGTG
GGTTCATTCTTGCTCGGGGATCTTTGTCAAAGTGCGGGTGTCCATAAGCT
CGTCATTTTGAACGTAAGAGGAGGAGGGCTGACAGTCTAGAGCACTTCGG
AAGTGCATGTGGAAGTATGCTTCTACGCACAAATTGCGGTGTGAAAGGAA
ACGCCCTGCCTCCGGCCACATGGCAGCGCAGCAGCGCTGCGATGCACATT
TTTGGTGCACGATGCTTTGTTTTCTCTTTTCATGGCTTCAGGTCCGCTGC
GCATGAAACAATCTTGGGCCGCCGCAAGCTATGATGGCGATGGTTTGACA
CCAGCCGACATAACGTGCGCGGGCTTAACGTCTGCCCCCTCTGCGCCCCC
AACATACATTGCATTCGTATCAACCTCCCAAATGTCCAGGCCGCCGTGGT
CCGCCTCACCGAGGAAGTAGCGGCGACCCATGGTGCTGCCGCTGCTTACC
CGATGTCGCCCGCGATTACCAGACACCAAGGCAGAAGCGGCATCGCAGAA
GGATCCCCGCCAGACTTCATGGCCATCTACGGTACGTGGAAACCTCTCGA
GTGCCAAAAGCACTTGCTGCGGCGGATGCACCAGGCGTTTGCGCAGAAAT
TTCGCGCAGCAAAGGACGCTCTAGCACCAGGGAGCGACATCCTTCACGTG
GAAGAGCAGATCGGGCGGGGAAGCTTCGGCGGCGTACACAAGGCCGTCTG
CTCTGCCACCGGAGAGATGTGGGCCATCAAGAAACCTGTGAAGGTGAGTA
AGGGAGCGCGTGGGCAAGTAAACAATATCGAGATCGACTGAGACAAAATT
GAATCGAAGTACGTCTCACACGACATCCCTCAGGAGGTGTTCCTACGGCG
ATGTTAAATAGTTCGGTAATTTTCATCGGAACTCGTCGTATGGGTCCGAC
GGACGACCGGGTGAGTCGAGGTCGTCTGTCACGCACTGCAAAGAGCTTGA
TGGGTCGTGCTCACGGATCTGACGTTGAAATATCGTCACCGAGTCGCGTT
TCCTGCCCGGCTGAGAGGCTGGTGGAGTACCAGTTTTTGTCTCCTTGCTC
AGGGCCTGCTGCCCCAGCATCCGAAATTGTGTGGAGTACAATAGTTTCCC
TTCCAGCTGCTATCCCTACGGGGCTGCATAGACGGGGCGTACGGAAGGGA
AGTGTGCAGATCGTTGGAAGGTATTTGACATATAGCGACACCTTCGACCG
ACCTTGCTCCTTGCCCACCCCGCTGCCCGCGAATTCTCTGCGTTTTGCTC
TAAAGGAGGCCGACAAGGAAGTCCTCATCTACGAGATCCTCGTCTACCGC
AGGTGATACTAACGAGCTGTTTCACCCTGAATTCTCTCCCATAAGACTGC
GTGCCAGTTATGTATTTTGAAACGACGACGAGCAGCCATCGCAAGGATGA
CGGGCGAGAGGCAGCATAGAAACTTCAACGTTCTTAATCCGGCCTGTCTG
TATAGTCTAGACTACAGAAAATCCCTTGGTCCATCCACATACAAGACCAC
ACGCGGAGATCGGTCGGCCGGCGGACCCATCTCCATCTATCCTCATTCTT
AGTCAGCCACGATGACAATTTTTCAGAAAGGTCACCATCAGGAGACACAA
TTTTTCCAAGCTCTCCTGCGGTGCCGTCCTCGATTTCGCCGTGGACGACA
CCACCCGTCGAACAAGGATCTTGAGTCATGCCTGTTTTTTTGTGGAATTT
TTGGAATTTCGCCGCAGGTGCGTTGATCAATCAGCGAATTGCTTGCCACA
AAACCTTTTCCGCTGGCACTGAGTCATCCAGGAAACAGAATAAAAGTGCT
TCTTCTTGCTATGTCCTGCTTAGTCCTTGCAGGATGTCACCCTGGGGTTG
AAGCGCCATGCGTATGATTTTGAAAAAAAGGTTTAACAACACTAAAGGAA
TACCGTCTGAGGCATACACTGTCCCAGAGGGCTTTTGCCAATTCCTTTGA
GTGAGGGTTCAGTACAGTTGACGTGCGTATGATTTTGGAGCACGACCGTT
CAACAGCCCCCGGCAGTGTTTCCCTCTCTCTATCCTCTTCAAAGGATGGC
TACCTTGCGCTTTTTTTCACATTTGCTCGATTCATCGCCATAGTGCTTGC
TTGCTTTCCGTCGTTGCCCAATCTATATTGCCCGTATGATCGCTTGCCCC
GCCGTCCTTATTTCTCCCTCCTGATGCGCACGTGTGTCTGTAGGCTCCCG
GCTCACCCCAACATCCTCCGCGTCCACTCCATGTACGACTGCCTCTCCTC
CCCGGCTTTGGCGCTGGAATGTGGCAAATGCGACTTTAACCGAGCCCTCG
CCAACGGCCTGATGTCGTTCGCGGACGAGTTGGAGTGAGTGCCTCTACCG
CACATCCACACCATATGCATGTTATCCCGTCCAGCATGTCCTAGCAAGAA
GGGCGTCCTCCCGCGCGACCTCGTCCTAAATCCTAGATGAAACCTCCAGA
TTCGTTACTTGGGATCAATCGTGCTACTGCAGTGCGTAGGCCTCGGCGTG
TGTCGATGACGGGTCTAGATCGCTTTTCTTGCGCGTCGGCACGCTGATGT
CTCTCCGATCCCTATTCCTATTCCCTACCGCCGATGTCTCTGGTGGCCTA
TCTCTTTTCTATCTTTTTCCATTCGATGGCGTCTCATTCGACTCAGATGC
ATGGCCGACGTCGCCGAGGGCACGGGCCACTGCCACGACAACGGAATCGT
AGTTTGTGACCTCAAGCCGTCCAACGTCATCCTCGTTCATAACGGAGCTC
GTTACGTGGGCAAGGTGGCAGACTTCGGGCTCGCGTATGGTGAGCGGATG
GGAAGGTCGTGTTAAGCTTTGGTCAAGCAGCTCAGACGACGCACCTTTTG
AACAAAGGCGTTACAACGGCTGTGGGAGCTGCTCAGGGGATGTCGCCACT
AAATCGACCCATGCACGGATTCCTACGTCAATGCTATGGTGGTACTGCTG
AGCCGACCATAGCGTGCTTCGTTTGGCGTTTTTTTTGCCTCGCTCTTTTG
AGGTGCAGTAGTTTACCACGATCACACAAATTATTTCCACCAACCAACCT
GCGCTGTGATGCTGCGCTTCAGAAAGCATTCATGTTTAGCATTGCAACCA
AAGTGACAATTGAGATTGCTGCGTTTCAATCAATGGAGTGTAGGCCTGCC
AGGCGAGGCACGATGGAGCAATCGCCTGTATCCCTCTTCATCTGCAACTC
TCTTACATTCTCAGTACGCAACATCGGGAGACCCGCTTCCACGCTCCCGT
GCACCAGTAACTGCAACAACAACTGCTGCTACTCCACGCCGACCGGTTTG
TCGTCTCTCTATCCCAGGCATCGGGCAGACCCGGGGAGCCAGGTGTGGAA
CCCCCGGCTACTTTCCGCCCGAGGTAGCGTTCTTGCCGACATTGGCTGAG
CCGAGCACCGACGCGGTCTCGGTGGGGGCGATGTTGGCTATCGTGGCCTT
GCTAACGTCCAAGCGGGAGTCAAACGTCTTCGCCCACCGGGTGAGCAAGA
TTGAGGGTGGGTGCGTGGTTGAGGGAGATGGAACTGTTGTGGCCGCGTGT
TTCCCAACATTGTCAAGGGGGTGGAGTGGAAACCGCCGTGGAACATAACC
CGTCGTCGTTTCTTGGCCACAACCAAATAAAAAACCTTCATGAATTCGAC
TACTGCACGCAACTGGTGTTCTCGTGCTACTGTTAACCGCTCCAAGTCGC
AAGATTGACATTGTGTTGTGGGGCGTACTTTCGTACCCATGCCACATGTA
ACAGCCGCCATCACCACTCTTGACTGCGCCTGACTAGTTGGGGTGTCCTT
TCCGATCCCCACTTACCTGCTAATCCGATTGGATTGACCCATGCTGCAGA
TGTTCCGGACCCCTGCAGAGAATGTTCAGCTCGAGCAGTGGGCGCAGATG
GGGTCCGGCGGCGTCAGAGACCTGCTCGTGAGTGAGGCCGCTCTCGATTA
TAGGGAAACGCCCGGTGTGCGGCATTCAACCAAGGAATACCTCTGTGTCT
ACTATGTATGGCCTCAACGCTTCCACGATTTCGAAGCAACCGAGATTGAA
TTGTGCTTTCAATGATTCTTTGCTGAAACGACAAGGCGACACGACAAACG
GCGTGGGCAGCCGCTGCACGTGGGCGCACCTGCAAAGCAGAAAGGGGTGT
TGTCCAACCAGTCGATAATGGCTCAAGGATGAGCAGTCTTGAACTCTGTC
GTGTCTCCTGATCCTACCGACAAGCAGACGGTACCATAGTACAACAGCAG
ATCGTGTGTGGTGGTAGATTCAATCGCTCGGTTGGTCAGAACGCTCTCTA
CTGGGCCGACGGGCTCGCCTCGACCAGCCTGAAGGACGAAGGCAAAGGAA
ACGAGCAAACCACACGCCCAACTGTGCCCTTCTTTGTGCTGACATGACCG
AATGTCTCACTTTCGTTGCTCTGTGGTTTCCTGACGGCATTCACCTTACA
GATGACGATCACCATCCGCACCATGCAGCTGCCCGAACACGGCTTTGCCA
AGAAGGTGACGCGTCCGTCCCTGCTGAACAAGATGCCCGGGAGCTCAATG
GTGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1160:10989..15694-

>mRNA_H-canaliculatus_F_contig1160.1410.1 ID=mRNA_H-canaliculatus_F_contig1160.1410.1|Name=mRNA_H-canaliculatus_F_contig1160.1410.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2376bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1160:10989..15694- (Hapterophycus canaliculatus Oshoro5f female)
GGACAGCTCGAGGCCGCCCTCAGCAGAGCGACCGCGGCGGAAGACAAGGC
AAGGGTTGCCGACGAGTTCAGACACGTGGCTGAAGAGAGGACCAGGTTGG
CCGAAGAGTCGGCACGGGCGGCCGAAGAGAAAGCGAGGGTGGCCGAGGGA
CAGCTCGAGGCCGCCCTCAGCAGAGCGACCGCGGCGGAAGACAAGGCAAG
GGTTGCCGACGAGTTCAGACACGTGGCTGAAGAGAGGACCAGGTTGGCCG
AAGAGTCGGCACGGGCGGCCGAAGAGAAAGCGAGGGTGGCCGAGGCCGCC
GTGGTCCGCCTCACCGAGGAAGTAGCGGCGACCCATGGTGCTGCCGCTGC
TTACCCGATGTCGCCCGCGATTACCAGACACCAAGGCAGAAGCGGCATCG
CAGAAGGATCCCCGCCAGACTTCATGGCCATCTACGGTACGTGGAAACCT
CTCGAGTGCCAAAAGCACTTGCTGCGGCGGATGCACCAGGCGTTTGCGCA
GAAATTTCGCGCAGCAAAGGACGCTCTAGCACCAGGGAGCGACATCCTTC
ACGTGGAAGAGCAGATCGGGCGGGGAAGCTTCGGCGGCGTACACAAGGCC
GTCTGCTCTGCCACCGGAGAGATGTGGGCCATCAAGAAACCTGTGAAGGC
CGCCGTGGTCCGCCTCACCGAGGAAGTAGCGGCGACCCATGGTGCTGCCG
CTGCTTACCCGATGTCGCCCGCGATTACCAGACACCAAGGCAGAAGCGGC
ATCGCAGAAGGATCCCCGCCAGACTTCATGGCCATCTACGGTACGTGGAA
ACCTCTCGAGTGCCAAAAGCACTTGCTGCGGCGGATGCACCAGGCGTTTG
CGCAGAAATTTCGCGCAGCAAAGGACGCTCTAGCACCAGGGAGCGACATC
CTTCACGTGGAAGAGCAGATCGGGCGGGGAAGCTTCGGCGGCGTACACAA
GGCCGTCTGCTCTGCCACCGGAGAGATGTGGGCCATCAAGAAACCTGTGA
AGGAGGCCGACAAGGAAGTCCTCATCTACGAGATCCTCGTCTACCGCAGG
AGGCCGACAAGGAAGTCCTCATCTACGAGATCCTCGTCTACCGCAGGCTC
CCGGCTCACCCCAACATCCTCCGCGTCCACTCCATGTACGACTGCCTCTC
CTCCCCGGCTTTGGCGCTGGAATGTGGCAAATGCGACTTTAACCGAGCCC
TCGCCAACGGCCTGATGTCGTTCGCGGACGAGTTGGAGCTCCCGGCTCAC
CCCAACATCCTCCGCGTCCACTCCATGTACGACTGCCTCTCCTCCCCGGC
TTTGGCGCTGGAATGTGGCAAATGCGACTTTAACCGAGCCCTCGCCAACG
GCCTGATGTCGTTCGCGGACGAGTTGGAATGCATGGCCGACGTCGCCGAG
GGCACGGGCCACTGCCACGACAACGGAATCGTAGTTTGTGACCTCAAGCC
GTCCAACGTCATCCTCGTTCATAACGGAGCTCGTTACGTGGGCAAGGTGG
CAGACTTCGGGCTCGCGTATGATGCATGGCCGACGTCGCCGAGGGCACGG
GCCACTGCCACGACAACGGAATCGTAGTTTGTGACCTCAAGCCGTCCAAC
GTCATCCTCGTTCATAACGGAGCTCGTTACGTGGGCAAGGTGGCAGACTT
CGGGCTCGCGTATGGCATCGGGCAGACCCGGGGAGCCAGGTGTGGAACCC
CCGGCTACTTTCCGCCCGAGGTAGCGTTCTTGCCGACATTGGCTGAGCCG
AGCACCGACGCGGTCTCGGTGGGGGCGATGTTGGCTATCGTGGCCTTGCT
AACGTCCAAGCGGGAGTCAAACGTCTTCGCCCACCGGGCATCGGGCAGAC
CCGGGGAGCCAGGTGTGGAACCCCCGGCTACTTTCCGCCCGAGGTAGCGT
TCTTGCCGACATTGGCTGAGCCGAGCACCGACGCGGTCTCGGTGGGGGCG
ATGTTGGCTATCGTGGCCTTGCTAACGTCCAAGCGGGAGTCAAACGTCTT
CGCCCACCGGATGTTCCGGACCCCTGCAGAGAATGTTCAGCTCGAGCAGT
GGGCGCAGATGGGGTCCGGCGGCGTCAGAGACCTGCTCATGTTCCGGACC
CCTGCAGAGAATGTTCAGCTCGAGCAGTGGGCGCAGATGGGGTCCGGCGG
CGTCAGAGACCTGCTCATGACGATCACCATCCGCACCATGCAGCTGCCCG
AACACGGCTTTGCCAAGAAGGTGACGCGTCCGTCCCTGCTGAACAAGATG
CCCGGGAGCTCAATGGTGAGCATGACGATCACCATCCGCACCATGCAGCT
GCCCGAACACGGCTTTGCCAAGAAGGTGACGCGTCCGTCCCTGCTGAACA
AGATGCCCGGGAGCTCAATGGTGAGC
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