mRNA_H-canaliculatus_F_contig11594.1404.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11594.1404.1
Unique NamemRNA_H-canaliculatus_F_contig11594.1404.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11594.1404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11594contigH-canaliculatus_F_contig11594:1669..2355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size687
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11594.1404.1prot_H-canaliculatus_F_contig11594.1404.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11594 1720..2091 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928850.5837429-UTR-H-canaliculatus_F_contig11594:1668..17191622928850.5837429-UTR-H-canaliculatus_F_contig11594:1668..1719Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11594 1669..1719 +
1696845588.4125977-UTR-H-canaliculatus_F_contig11594:1668..17191696845588.4125977-UTR-H-canaliculatus_F_contig11594:1668..1719Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11594 1669..1719 +
1622928850.6096406-UTR-H-canaliculatus_F_contig11594:2091..23551622928850.6096406-UTR-H-canaliculatus_F_contig11594:2091..2355Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11594 2092..2355 +
1696845588.4341538-UTR-H-canaliculatus_F_contig11594:2091..23551696845588.4341538-UTR-H-canaliculatus_F_contig11594:2091..2355Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11594 2092..2355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928850.5969722-CDS-H-canaliculatus_F_contig11594:1719..20911622928850.5969722-CDS-H-canaliculatus_F_contig11594:1719..2091Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11594 1720..2091 +
1696845588.4228978-CDS-H-canaliculatus_F_contig11594:1719..20911696845588.4228978-CDS-H-canaliculatus_F_contig11594:1719..2091Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11594 1720..2091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11594.1404.1

>prot_H-canaliculatus_F_contig11594.1404.1 ID=prot_H-canaliculatus_F_contig11594.1404.1|Name=mRNA_H-canaliculatus_F_contig11594.1404.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
MRRRTRRRRRRRARRCPRLATAAARARPAPRLRRLAPRGTNPSSSSSGST
RTSRWKRSLWKRRLRSSMPQGPWRTGAVAARTGARRSRVRTRPGPSSVWA
PRLLGRRGEGGARGPGGEAGRLD*
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mRNA from alignment at H-canaliculatus_F_contig11594:1669..2355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11594.1404.1 ID=mRNA_H-canaliculatus_F_contig11594.1404.1|Name=mRNA_H-canaliculatus_F_contig11594.1404.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=687bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11594:1669..2355+ (Hapterophycus canaliculatus Oshoro5f female)
GGCTTGCGCTCGGCCGGCTGCTGGGTCAGGCCCTCAACCTCCTGGACCCC
GATGCGGCGTCGGACGCGAAGGCGGCGGCGGCGGCGAGCGCGGCGCTGTC
CGCGCTTAGCAACGGCAGCGGCACGAGCGCGACCAGCGCCGAGACTCCGC
CGCCTCGCTCCACGGGGCACAAATCCCAGCAGCAGCAGCAGCGGCAGCAC
ACGGACGTCGAGATGGAAGCGGTCGCTGTGGAAACGCCGCCTGAGGTCGT
CGATGCCACAGGGTCCGTGGCGAACGGGAGCCGTGGCGGCGCGAACGGGA
GCACGGCGTTCGCGGGTTCGAACCCGGCCGGGGCCAAGTTCGGTGTGGGC
CCCGCGCTTGTTGGGACGACGGGGTGAGGGAGGGGCTCGAGGGCCGGGGG
GCGAGGCAGGACGACTCGACTAGACTCGAAGCATGGCGAGGCAAGGCTAG
GCTAGGCTTGGCGAAAGGGAGAGGGGGTTTCGAGTTGTTGGCGAGGCGCG
CCGCCGGGGGAAGGGGGACGAGCGGCACGGCGGTGCAGCGGCAGGCGATG
TAAAAAGTGCATCTCGATCATGATCGATTCTGATTCGGGGGAGGCGTTCG
TCTGGGGCGGGTGGTAGAGGAGGTGCGAGGAGCGGGGCTGCTGCGGCGGG
AGAAGGAGTGGAGGCCGCCGCCGCCGCGGCCGCCTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11594:1669..2355+

>mRNA_H-canaliculatus_F_contig11594.1404.1 ID=mRNA_H-canaliculatus_F_contig11594.1404.1|Name=mRNA_H-canaliculatus_F_contig11594.1404.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11594:1669..2355+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGCGTCGGACGCGAAGGCGGCGGCGGCGGCGAGCGCGGCGCTGTCC
GCGCTTAGCAACGGCAGCGGCACGAGCGCGACCAGCGCCGAGACTCCGCC
GCCTCGCTCCACGGGGCACAAATCCCAGCAGCAGCAGCAGCGGCAGCACA
CGGACGTCGAGATGGAAGCGGTCGCTGTGGAAACGCCGCCTGAGGTCGTC
GATGCCACAGGGTCCGTGGCGAACGGGAGCCGTGGCGGCGCGAACGGGAG
CACGGCGTTCGCGGGTTCGAACCCGGCCGGGGCCAAGTTCGGTGTGGGCC
CCGCGCTTGTTGGGACGACGGGGTGAGGGAGGGGCTCGAGGGCCGGGGGG
CGAGGCAGGACGACTCGACTAGATGCGGCGTCGGACGCGAAGGCGGCGGC
GGCGGCGAGCGCGGCGCTGTCCGCGCTTAGCAACGGCAGCGGCACGAGCG
CGACCAGCGCCGAGACTCCGCCGCCTCGCTCCACGGGGCACAAATCCCAG
CAGCAGCAGCAGCGGCAGCACACGGACGTCGAGATGGAAGCGGTCGCTGT
GGAAACGCCGCCTGAGGTCGTCGATGCCACAGGGTCCGTGGCGAACGGGA
GCCGTGGCGGCGCGAACGGGAGCACGGCGTTCGCGGGTTCGAACCCGGCC
GGGGCCAAGTTCGGTGTGGGCCCCGCGCTTGTTGGGACGACGGGGTGAGG
GAGGGGCTCGAGGGCCGGGGGGCGAGGCAGGACGACTCGACTAG
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