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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 933 |
| Cds size | 507 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928850.4376903-UTR-H-canaliculatus_F_contig11593:2901..3023 | 1622928850.4376903-UTR-H-canaliculatus_F_contig11593:2901..3023 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig11593 2902..3023 - |
| 1696845588.3679578-UTR-H-canaliculatus_F_contig11593:2901..3023 | 1696845588.3679578-UTR-H-canaliculatus_F_contig11593:2901..3023 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig11593 2902..3023 - |
| 1622928850.5266302-UTR-H-canaliculatus_F_contig11593:3585..3889 | 1622928850.5266302-UTR-H-canaliculatus_F_contig11593:3585..3889 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig11593 3586..3889 - |
| 1696845588.4024184-UTR-H-canaliculatus_F_contig11593:3585..3889 | 1696845588.4024184-UTR-H-canaliculatus_F_contig11593:3585..3889 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig11593 3586..3889 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928850.4599004-CDS-H-canaliculatus_F_contig11593:3023..3055 | 1622928850.4599004-CDS-H-canaliculatus_F_contig11593:3023..3055 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11593 3024..3055 - |
| 1696845588.3780816-CDS-H-canaliculatus_F_contig11593:3023..3055 | 1696845588.3780816-CDS-H-canaliculatus_F_contig11593:3023..3055 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11593 3024..3055 - |
| 1622928850.4762037-CDS-H-canaliculatus_F_contig11593:3110..3585 | 1622928850.4762037-CDS-H-canaliculatus_F_contig11593:3110..3585 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11593 3111..3585 - |
| 1696845588.3922102-CDS-H-canaliculatus_F_contig11593:3110..3585 | 1696845588.3922102-CDS-H-canaliculatus_F_contig11593:3110..3585 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11593 3111..3585 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11593.1403.1 >prot_H-canaliculatus_F_contig11593.1403.1 ID=prot_H-canaliculatus_F_contig11593.1403.1|Name=mRNA_H-canaliculatus_F_contig11593.1403.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=169bp
MGLRAPNLQEGETPPRKKSVASRYLARRRGRQSVSLEVYFQGDDGLHGDW
QLLRLAEIQPFLFFAFLRYSDFSARFFLSASRLLPTDGEIPKGLPASRYK
RKPQNTGGGVCRRLEVRDEGFTQASKSVQQQPRRSRRHPSGNRAFVQTKP
ACTRRARTIRPGLRSFRS* back to topmRNA from alignment at H-canaliculatus_F_contig11593:2902..3889- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig11593.1403.1 ID=mRNA_H-canaliculatus_F_contig11593.1403.1|Name=mRNA_H-canaliculatus_F_contig11593.1403.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=988bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11593:2902..3889- (Hapterophycus canaliculatus Oshoro5f female)
CTCCGATGAAGACGGGCCGAGACCCGCAAAAATGCCCCATCAAGGTGTCG
CCGGGGCAGGCCCGCGTAGCCCCAAGCACGACGAGAAAACGCGGTCTCAG
GGGTTTGCGGCACGCGTTTCTCTGATTCCGATTGGTCAAGAGGCCTGCGG
CGAAGTTTTGATGACGGGCGGTGTGCCGCCTTCTCCAAGAAGAAGTGGTT
GCGAGGCGGACCGCGGGGGTTTGAGCTGAACCGTCGTGCACGCGCAGACC
CGGCAGCTTCGGCAGAACCCCCCCGCGTTCTGGCGTCACCACGGCAGCTG
ATGGATGGGCCTCCGCGCCCCCAACTTGCAGGAGGGAGAGACGCCCCCCC
GAAAAAAGTCGGTAGCCTCCCGCTATCTTGCTCGTCGGCGAGGAAGACAG
AGTGTTTCGCTGGAGGTGTATTTTCAAGGCGATGACGGTCTCCACGGAGA
TTGGCAGCTCCTTCGATTGGCAGAGATTCAGCCCTTCTTGTTCTTTGCGT
TTCTACGATATTCCGATTTTTCTGCCCGATTTTTCTTGTCGGCTTCTCGT
TTGTTACCTACGGACGGGGAAATACCCAAAGGCCTGCCCGCTTCGAGATA
CAAACGAAAGCCTCAAAATACGGGGGGGGGGGTCTGTCGGAGGTTAGAAG
TACGGGATGAGGGCTTCACGCAAGCGAGCAAGAGCGTGCAGCAACAGCCT
CGGAGATCTCGCCGCCATCCCAGCGGAAATCGCGCTTTTGTCCAGACAAA
ACCCGCATGCACAAGACGCGCACGCACCAGTCCGACCGGGTCTTCGCAGA
CAAAACCCGCATGCACAAGACGCGCACGCACCAGTCCGACCGGGTCTTCG
CAGTTTTAGAAGCTAGAGCTACAGCTCAGCACAAGCCAGCTCACCTGGAA
ACGGAAGAAGGCGTCGGAGCTGTAGGTAGCAAGGTCCGGGACGACCATCA
GGGCACCGTAGCACGGCATGGAAGCAGAACCGAGGCCT back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig11593:2902..3889- >mRNA_H-canaliculatus_F_contig11593.1403.1 ID=mRNA_H-canaliculatus_F_contig11593.1403.1|Name=mRNA_H-canaliculatus_F_contig11593.1403.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1014bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11593:2902..3889- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCCTCCGCGCCCCCAACTTGCAGGAGGGAGAGACGCCCCCCCGAAA
AAAGTCGGTAGCCTCCCGCTATCTTGCTCGTCGGCGAGGAAGACAGAGTG
TTTCGCTGGAGGTGTATTTTCAAGGCGATGACGGTCTCCACGGAGATTGG
CAGCTCCTTCGATTGGCAGAGATTCAGCCCTTCTTGTTCTTTGCGTTTCT
ACGATATTCCGATTTTTCTGCCCGATTTTTCTTGTCGGCTTCTCGTTTGT
TACCTACGGACGGGGAAATACCCAAAGGCCTGCCCGCTTCGAGATACAAA
CGAAAGCCTCAAAATACGGGGGGGGGGGTCTGTCGGAGGTTAGAAGTACG
GGATGAGGGCTTCACGCAAGCGAGCAAGAGCGTGCAGCAACAGCCTCGGA
GATCTCGCCGCCATCCCAGCGGAAATCGCGCTTTTGTCCAGACAAAACCC
GCATGCACAAGACGCGCACGCACCAATGGGCCTCCGCGCCCCCAACTTGC
AGGAGGGAGAGACGCCCCCCCGAAAAAAGTCGGTAGCCTCCCGCTATCTT
GCTCGTCGGCGAGGAAGACAGAGTGTTTCGCTGGAGGTGTATTTTCAAGG
CGATGACGGTCTCCACGGAGATTGGCAGCTCCTTCGATTGGCAGAGATTC
AGCCCTTCTTGTTCTTTGCGTTTCTACGATATTCCGATTTTTCTGCCCGA
TTTTTCTTGTCGGCTTCTCGTTTGTTACCTACGGACGGGGAAATACCCAA
AGGCCTGCCCGCTTCGAGATACAAACGAAAGCCTCAAAATACGGGGGGGG
GGGTCTGTCGGAGGTTAGAAGTACGGGATGAGGGCTTCACGCAAGCGAGC
AAGAGCGTGCAGCAACAGCCTCGGAGATCTCGCCGCCATCCCAGCGGAAA
TCGCGCTTTTGTCCAGACAAAACCCGCATGCACAAGACGCGCACGCACCA
TCCGACCGGGTCTTCGCAGTTTTAGAAGCTAGTCCGACCGGGTCTTCGCA
GTTTTAGAAGCTAG back to top
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