mRNA_H-canaliculatus_F_contig1156.1381.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1156.1381.1
Unique NamemRNA_H-canaliculatus_F_contig1156.1381.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1156.1381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1156contigH-canaliculatus_F_contig1156:28681..29621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size942
Cds size504
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928846.2514298-UTR-H-canaliculatus_F_contig1156:28680..291171622928846.2514298-UTR-H-canaliculatus_F_contig1156:28680..29117Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1156 28681..29117 +
1696845586.6831927-UTR-H-canaliculatus_F_contig1156:28680..291171696845586.6831927-UTR-H-canaliculatus_F_contig1156:28680..29117Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1156 28681..29117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928846.2723374-CDS-H-canaliculatus_F_contig1156:29117..296211622928846.2723374-CDS-H-canaliculatus_F_contig1156:29117..29621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1156 29118..29621 +
1696845586.692059-CDS-H-canaliculatus_F_contig1156:29117..296211696845586.692059-CDS-H-canaliculatus_F_contig1156:29117..29621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1156 29118..29621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1156.1381.1prot_H-canaliculatus_F_contig1156.1381.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1156 29118..29621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1156.1381.1

>prot_H-canaliculatus_F_contig1156.1381.1 ID=prot_H-canaliculatus_F_contig1156.1381.1|Name=mRNA_H-canaliculatus_F_contig1156.1381.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=168bp
MARLRSDSKRCGTRQRRRVPRFFKTANATKNKSTHKRRKSNQPRSTPPLA
GTMRIARGIASLPVQPQQNCLGLRLPVGSQPVPAPDDHAQHATQPHGALC
FSSFSFLSTHPAIHAYARYHPLTKKNYNVVQYLEVRVYVYATQDTTPSRE
KVHYTVCVPREESCSCQY
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mRNA from alignment at H-canaliculatus_F_contig1156:28681..29621+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1156.1381.1 ID=mRNA_H-canaliculatus_F_contig1156.1381.1|Name=mRNA_H-canaliculatus_F_contig1156.1381.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=941bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1156:28681..29621+ (Hapterophycus canaliculatus Oshoro5f female)
TAAAATGAAAGTTTGTTGTCGCAGAGATAAACTGTAGTTTATTGTGAAAC
GGCAGAATTGTAAGGTGGCATTATTTAGGCTGCTGAGTCAAGAAGAGTTA
CCTTCAGTCCGGGCGAAGCACGTTTGCGCTGCAGCGAGTCACGCTGAGGA
GCGTCCAGAGCTGCGAGCTCGTGCAGAGACAGGAGGGATAAAAGAGTGGC
CGGCTAACGGAAGCGGCCAGAGTGTTTTCTTTCTTTCTCTTTACAGCCTC
AGCGCGACCGCTGTCATCCCGGGCCCTGTCTCCTGACCAAAAAGACCGGC
TCCGGCGGGAGGAGAGGGCGCAGCAGCTAGCCGGAAGCGACACGGCTCCG
ACATAAGGTACGCACTCGAGTACGCACAACCGGCCTCGGGCACGTGCCGT
AACGGCCGGAACACGCACACCAAGCAGCGAGGGGAGGATGGCGCGCCTGC
GCAGTGATAGCAAGCGGTGCGGCACACGCCAACGTCGTAGGGTCCCACGC
TTTTTCAAAACTGCGAACGCAACGAAAAACAAGAGCACGCATAAGCGGCG
GAAAAGCAACCAACCAAGGTCGACACCACCCCTCGCGGGCACAATGCGTA
TCGCGAGAGGAATCGCGTCCCTACCAGTGCAGCCCCAGCAGAACTGCCTA
GGTCTACGTTTGCCCGTAGGTTCGCAGCCCGTGCCTGCTCCAGATGACCA
CGCACAGCATGCAACTCAGCCACATGGTGCTCTGTGTTTTTCTTCGTTTT
CCTTTTTGTCTACACACCCGGCCATCCACGCATACGCAAGATACCACCCC
CTCACGAAAAAAAATTACAATGTTGTACAGTACTTGGAAGTACGAGTTTA
TGTTTATGCTACGCAGGATACCACCCCCTCACGAGAAAAAGTGCACTATA
CTGTATGTGTACCGCGAGAGGAATCGTGTTCTTGCCAGTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1156:28681..29621+

>mRNA_H-canaliculatus_F_contig1156.1381.1 ID=mRNA_H-canaliculatus_F_contig1156.1381.1|Name=mRNA_H-canaliculatus_F_contig1156.1381.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1008bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1156:28681..29621+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGCGCCTGCGCAGTGATAGCAAGCGGTGCGGCACACGCCAACGTCG
TAGGGTCCCACGCTTTTTCAAAACTGCGAACGCAACGAAAAACAAGAGCA
CGCATAAGCGGCGGAAAAGCAACCAACCAAGGTCGACACCACCCCTCGCG
GGCACAATGCGTATCGCGAGAGGAATCGCGTCCCTACCAGTGCAGCCCCA
GCAGAACTGCCTAGGTCTACGTTTGCCCGTAGGTTCGCAGCCCGTGCCTG
CTCCAGATGACCACGCACAGCATGCAACTCAGCCACATGGTGCTCTGTGT
TTTTCTTCGTTTTCCTTTTTGTCTACACACCCGGCCATCCACGCATACGC
AAGATACCACCCCCTCACGAAAAAAAATTACAATGTTGTACAGTACTTGG
AAGTACGAGTTTATGTTTATGCTACGCAGGATACCACCCCCTCACGAGAA
AAAGTGCACTATACTGTATGTGTACCGCGAGAGGAATCGTGTTCTTGCCA
GTACATGGCGCGCCTGCGCAGTGATAGCAAGCGGTGCGGCACACGCCAAC
GTCGTAGGGTCCCACGCTTTTTCAAAACTGCGAACGCAACGAAAAACAAG
AGCACGCATAAGCGGCGGAAAAGCAACCAACCAAGGTCGACACCACCCCT
CGCGGGCACAATGCGTATCGCGAGAGGAATCGCGTCCCTACCAGTGCAGC
CCCAGCAGAACTGCCTAGGTCTACGTTTGCCCGTAGGTTCGCAGCCCGTG
CCTGCTCCAGATGACCACGCACAGCATGCAACTCAGCCACATGGTGCTCT
GTGTTTTTCTTCGTTTTCCTTTTTGTCTACACACCCGGCCATCCACGCAT
ACGCAAGATACCACCCCCTCACGAAAAAAAATTACAATGTTGTACAGTAC
TTGGAAGTACGAGTTTATGTTTATGCTACGCAGGATACCACCCCCTCACG
AGAAAAAGTGCACTATACTGTATGTGTACCGCGAGAGGAATCGTGTTCTT
GCCAGTAC
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