mRNA_H-canaliculatus_F_contig1149.1315.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1149.1315.1
Unique NamemRNA_H-canaliculatus_F_contig1149.1315.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1149.1315.1 vs. uniprot
Match: D8LDH4_ECTSI (HIG1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDH4_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.110e-32
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 2 
Query: 1694 GIYSFKQGNKVLSQKLMRGRVVAQGFTILVMTAGLYMAGPPEMHRETVEGKMAAISKQTNKWA---PPTAQAEAAAIEGNQK 1930
            GIYSFKQGNK LSQKLMRGRVVAQGFTILVMTAG YMAGPPEM R+TVEGKM AISKQTN+W+   PPTAQAEA AIE  +K
Sbjct:   39 GIYSFKQGNKQLSQKLMRGRVVAQGFTILVMTAGFYMAGPPEMTRQTVEGKMEAISKQTNRWSGVPPPTAQAEAVAIEDGRK 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1149.1315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDH4_ECTSI1.110e-3282.93HIG1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1149contigH-canaliculatus_F_contig1149:870..4302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue5e-28
Seed eggNOG ortholog2880.D8LDH4
Preferred nameHIGD1B
GOsGO:0001666,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0007154,GO:0007610,GO:0008150,GO:0008152,GO:0008535,GO:0009056,GO:0009057,GO:0009267,GO:0009605,GO:0009628,GO:0009636,GO:0009889,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010562,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010821,GO:0010823,GO:0010941,GO:0016020,GO:0016021,GO:0016043,GO:0016567,GO:0016740,GO:0017004,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019866,GO:0019941,GO:0022607,GO:0023051,GO:0023057,GO:0030163,GO:0030534,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032592,GO:0032991,GO:0033043,GO:0033108,GO:0033554,GO:0033617,GO:0033674,GO:0034622,GO:0036211,GO:0036293,GO:0036294,GO:0042149,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042594,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045471,GO:0045859,GO:0045860,GO:0045937,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051603,GO:0051716,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0060255,GO:0060548,GO:0061418,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070647,GO:0070887,GO:0071453,GO:0071456,GO:0071496,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0090199,GO:0090201,GO:0097249,GO:0097250,GO:0097305,GO:0098573,GO:0098771,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1903506,GO:2000112,GO:2001141,GO:2001233,GO:2001234
EggNOG free text desc.mitochondrial respiratory chain supercomplex assembly
EggNOG OGsKOG4431@1,KOG4431@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypoxia induced protein, domain
Ec32 orthologEc-15_000600.1
Exons2
Model size2218
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1149.1315.1prot_H-canaliculatus_F_contig1149.1315.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1149 2332..4017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928835.975354-UTR-H-canaliculatus_F_contig1149:869..23311622928835.975354-UTR-H-canaliculatus_F_contig1149:869..2331Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1149 870..2331 +
1696845582.8138793-UTR-H-canaliculatus_F_contig1149:869..23311696845582.8138793-UTR-H-canaliculatus_F_contig1149:869..2331Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1149 870..2331 +
1622928836.3813925-UTR-H-canaliculatus_F_contig1149:4017..43021622928836.3813925-UTR-H-canaliculatus_F_contig1149:4017..4302Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1149 4018..4302 +
1696845582.8437312-UTR-H-canaliculatus_F_contig1149:4017..43021696845582.8437312-UTR-H-canaliculatus_F_contig1149:4017..4302Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1149 4018..4302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928835.9946585-CDS-H-canaliculatus_F_contig1149:2331..26881622928835.9946585-CDS-H-canaliculatus_F_contig1149:2331..2688Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1149 2332..2688 +
1696845582.8264532-CDS-H-canaliculatus_F_contig1149:2331..26881696845582.8264532-CDS-H-canaliculatus_F_contig1149:2331..2688Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1149 2332..2688 +
1622928836.008908-CDS-H-canaliculatus_F_contig1149:3903..40171622928836.008908-CDS-H-canaliculatus_F_contig1149:3903..4017Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1149 3904..4017 +
1696845582.8354616-CDS-H-canaliculatus_F_contig1149:3903..40171696845582.8354616-CDS-H-canaliculatus_F_contig1149:3903..4017Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1149 3904..4017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1149.1315.1

>prot_H-canaliculatus_F_contig1149.1315.1 ID=prot_H-canaliculatus_F_contig1149.1315.1|Name=mRNA_H-canaliculatus_F_contig1149.1315.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=157bp
MCIPSCWSRPCLDPHLFSPNVSEEHMSLDGWLDCHTPWAMKRYIHPCLVR
RAQVTCLFRMCEDQSLCFVCTSCRQTPGIYSFKQGNKVLSQKLMRGRVVA
QGFTILVMTAGLYMAGPPEMHRETVEGKMAAISKQTNKWAPPTAQAEAAA
IEGNQK*
back to top

mRNA from alignment at H-canaliculatus_F_contig1149:870..4302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1149.1315.1 ID=mRNA_H-canaliculatus_F_contig1149.1315.1|Name=mRNA_H-canaliculatus_F_contig1149.1315.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3433bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1149:870..4302+ (Hapterophycus canaliculatus Oshoro5f female)
GGAGAGCTGCGAGCTTGGCCTGAAGAGAACTCGAAGGAAACTCACGCGTC
TGTAACATTACACCGCCATTCTCTTGTTGTAAACGCGCGGCGAAGAAACG
TGGGAAGGCACCGCGAATTCGAATCCGCCACGCGGCGATAGTCTACCGAG
GCTTACACGTTTACAACGAAAGTGTGGAAACAGCAGCATACTAAATTGAA
GTCGTTCATCCTTGAGTGCCTCCGCACTTGCCGAACCTGAGGCTGCAACT
ACGGGCCTGCCGTGTGGCCGCTGTCAGTTTTTGTCGGACATGACTGGCTA
ATCAGAGCGGCTACTCGGGGATTCCTTCAGCTGCCACCGTTTTGACCAAC
TGCTGGAGATGAGTATTTCTCGTCTTCCTTGCGATCGTATAACAAGCTTT
TGCGACGCCCTCGACATGGCATCAGATTGCAGGTTGTTGGTTTCATCATT
GATCCGACATCAAGTACGAGTATCGTCATGAATGCCGTGTCTGCGTTGGC
GTGAGCCAAAAATCGGCGCTTTTCTTCTTTCGTACTTCGGCCTGCTTCAG
GAATCCGGAGCAAGCACAGCGGGGACATGAACGTAGCATGCCAGAAGAAC
GCGCACTGACATGCTCCACACATAAATAGAGATCTCTCAATCCGTTCAAC
GAGGTACCGCAACACTCTGTTTGATCCCGACCATTCCCGCAGACTTCTAG
TTACCGTCGAGCTTGCTGCGCACAGCGGAACTCCGCCACTCCTCCGCTTT
TTCGTAGGATAACGGCGCAAGGGAAGCTCTCCCATCTCCTTTCAAAGGTC
ACAGCTCCCTCAAAGTACGTTGCCCACCTGGACCCAACAGCAGTCTCTAA
GAGACATCATTTGTGGCTACAGCACTTGACTCTCGAGGGTCGCCCGATGC
AAACAGCTGAGGAATAGCCAATGTGCTGGATAGCCAGTGGTGCCGCCGTA
CCTGGGATGGCGGTGTGGCAGGCCGTGCGGGTATTGTTGTGCCACAAGTC
TTCGACATGTGTCGTAGCCATCCGAGCTTGTTTATGCTTGGATTTGATGG
AGCCGGGCACGTCCCTATGGTCGTCTTCTAAAGGATGGTCGAGAGTCAAG
GGTTCTACAAGTATAGGGGAGATAATTGGAAGCCCCCCAGCTTTACAAAC
ATTTGCAGGCGTAAGAGGGAAAAAGTAGCAAACATCCCCCCCTGTATGAC
GTCCACGTTTTCTCTAAGCTGAAGCATTTGTCTACCCGTAGTCTAGCAGT
GTGTCCAGAGCATCGTTATACCAGTACGCACTCTAAGTGCCGGTGGTTGG
CGATACCCCACAGATCGTTTCTTCCTGGTGAACCACCAAGGAGACTACAC
AACTTGATGGTCATCTCCTTGTGGCCTCCTCCCTTCCCCTTCGCCTTCAC
CTCTGCCACTCCGTGTTCGTTCTCCGTCTCTCGTTGTGACGTCATGCGTT
GCCCACGAGAAAATGTGCATTCCTTCATGTTGGAGTCGCCCTTGTCTAGA
TCCACATTTGTTCTCCCCAAATGTCTCGGAAGAGCACATGTCCCTAGACG
GCTGGCTTGACTGTCACACACCCTGGGCCATGAAGCGATACATACATCCC
TGTCTAGTGAGACGAGCGCAAGTGACTTGTCTCTTTCGGATGTGTGAAGA
TCAATCCCTTTGTTTCGTGTGTACGTCGTGCCGCCAAACACCAGGGATTT
ACTCTTTCAAGCAAGGCAACAAAGTCCTCTCGCAAAAGCTTATGCGAGGT
CGGGTAGTAGCGCAGGGTTTCACGATCCTGGTCATGACGGCCGGGCTCTA
CATGGCAGGGCCACCAGAGGTACGCGATAAAGAATACATGATTTGATGTT
TTCCCCTCGTACACGGGCTTCCGAGCTCTCGCGGTTTTTCAGTCAAACAG
AGCGAAAAGGAGAGGCGACTTAAGCTTACGAAATACTTGTATATTGCTAC
TGTGGGCATTTCACGTGGAAAGGGATATAAATCAGCCCTTGAATACAATT
CTTACTTCTTAAGATCGAGTCTGTCATGAGAGCAATGTACCCACGACCCA
GGAGCAAAACGAGTTGTGCTTCGTGCAATACGAAAAGTAACTCGGTGGGT
TCATGCCGGAGCCGTGGTGGATGCTCTCCTCCTTCGACGGATTTGGACGT
GAGCAGCGGGAATTAATTCCGGGCGCTTCGCGTGTGCGCGTTCGCTCGTC
CCCACCTACTGCCCCACTGACCTACTTGCATCAAAAAATTATCGTTGTGA
GCTCTGTCATATCTGAAGGATAATTTAACGCGAAGGCTCTGAAGGGCGAT
AGGAAATTACCCAGCTACGTGTGTACCGCCTGATCGTGGCACCCGTCCTT
CGGCGAGATCACCCTTTGCGCTTTTGGTTTTATTCTCCAGGTCCAAAAGA
TTGTCGAACCCCTCCCCCCCCCCCGAAACACAAAATTCAGGTACCAGCTT
CACTTGTGAGGATGTTCTTCTTCGATTCATTTGCCGACGTGATTCACTAA
TGTTGCAAAGCGAAGAAACCAACCGCCGTTCCCACGGCGCTTCTAGTTTA
TCTGGGTGTAGATTTCCTTCTGTTTTTCAAGCTGATTCTGAAGCACCCTG
GAGTCATCGCTGGCTGTAATGTAGAAGCAAGCACCACGTCCGAGAGAATC
AACGTTGTCGCAAAATTCGCCTGCTCAAGCGTCGAATAGCACCTTGTTTC
TCGGCACCACATACTTGGAAGACTTTGGGAAATCGTGTTTGTTGCCTCCC
GTTCTATCCCCACTTGGACCTGATCCCCATCCAACCTCTTACCTCTCTGC
GCCTTTTCGTGCACATTGTGAGAGCGTATGTCGAAAACAATCCCCATATC
GATTTAGCACCCCAGTTTGTGTCGTACAAGCGTCGTGTGTCGAGAAGAAG
GTAGGTCTACAAATCTGGTGCCTAATTTGATGCTCACAAGGCGATGCTTA
ACTTTTGAGTATCCCTCTCCTCCCCGCCGTTGCCGCCCCTGACCGCACGG
TCGCGTCTGCCTGCAACCAACAACGGCTGCGAAGATGCACAGGGAGACGG
TCGAAGGGAAAATGGCTGCCATCAGCAAGCAGACCAACAAGTGGGCGCCT
CCCACCGCCCAGGCTGAAGCCGCAGCGATTGAGGGCAACCAAAAATGAAC
ACCCTTGTGTAACCAGTTTGACAGCGAAAGTTAAGGTGTATGATCGGTAT
ACATTTTGTTTTTCATGTTTTGGTGTATGATATGATGGGCGCAGTACCGT
AGAGCGTATTCTGAAGCGTGCTCTGTATGGTACTGAAGCGCGTGGCGAGG
ATGGAAAGTTCTTCTGAAGCGTTTTGTCTTCCGGGGCGAACCTGATCAAC
CAAATGCACATTTTTTTTTTATTGTGCGATGGAGCAACTAGTGCGCAAAA
GCTGATCGGCATCACGGTTGTCCCGCCTTTCTT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1149:870..4302+

>mRNA_H-canaliculatus_F_contig1149.1315.1 ID=mRNA_H-canaliculatus_F_contig1149.1315.1|Name=mRNA_H-canaliculatus_F_contig1149.1315.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=942bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1149:870..4302+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCATTCCTTCATGTTGGAGTCGCCCTTGTCTAGATCCACATTTGTT
CTCCCCAAATGTCTCGGAAGAGCACATGTCCCTAGACGGCTGGCTTGACT
GTCACACACCCTGGGCCATGAAGCGATACATACATCCCTGTCTAGTGAGA
CGAGCGCAAGTGACTTGTCTCTTTCGGATGTGTGAAGATCAATCCCTTTG
TTTCGTGTGTACGTCGTGCCGCCAAACACCAGGGATTTACTCTTTCAAGC
AAGGCAACAAAGTCCTCTCGCAAAAGCTTATGCGAGGTCGGGTAGTAGCG
CAGGGTTTCACGATCCTGGTCATGACGGCCGGGCTCTACATGGCAGGGCC
ACCAGAGATGTGCATTCCTTCATGTTGGAGTCGCCCTTGTCTAGATCCAC
ATTTGTTCTCCCCAAATGTCTCGGAAGAGCACATGTCCCTAGACGGCTGG
CTTGACTGTCACACACCCTGGGCCATGAAGCGATACATACATCCCTGTCT
AGTGAGACGAGCGCAAGTGACTTGTCTCTTTCGGATGTGTGAAGATCAAT
CCCTTTGTTTCGTGTGTACGTCGTGCCGCCAAACACCAGGGATTTACTCT
TTCAAGCAAGGCAACAAAGTCCTCTCGCAAAAGCTTATGCGAGGTCGGGT
AGTAGCGCAGGGTTTCACGATCCTGGTCATGACGGCCGGGCTCTACATGG
CAGGGCCACCAGAGATGCACAGGGAGACGGTCGAAGGGAAAATGGCTGCC
ATCAGCAAGCAGACCAACAAGTGGGCGCCTCCCACCGCCCAGGCTGAAGC
CGCAGCGATTGAGGGCAACCAAAAATGAATGCACAGGGAGACGGTCGAAG
GGAAAATGGCTGCCATCAGCAAGCAGACCAACAAGTGGGCGCCTCCCACC
GCCCAGGCTGAAGCCGCAGCGATTGAGGGCAACCAAAAATGA
back to top