mRNA_H-canaliculatus_F_contig11488.1313.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11488.1313.1
Unique NamemRNA_H-canaliculatus_F_contig11488.1313.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11488.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11488contigH-canaliculatus_F_contig11488:661..1433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size773
Cds size492
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928835.6270547-UTR-H-canaliculatus_F_contig11488:660..9411622928835.6270547-UTR-H-canaliculatus_F_contig11488:660..941Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11488 661..941 +
1696845582.6667585-UTR-H-canaliculatus_F_contig11488:660..9411696845582.6667585-UTR-H-canaliculatus_F_contig11488:660..941Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11488 661..941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928835.638768-CDS-H-canaliculatus_F_contig11488:941..14331622928835.638768-CDS-H-canaliculatus_F_contig11488:941..1433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11488 942..1433 +
1696845582.6750255-CDS-H-canaliculatus_F_contig11488:941..14331696845582.6750255-CDS-H-canaliculatus_F_contig11488:941..1433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11488 942..1433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11488.1313.1prot_H-canaliculatus_F_contig11488.1313.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11488 942..1433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11488.1313.1

>prot_H-canaliculatus_F_contig11488.1313.1 ID=prot_H-canaliculatus_F_contig11488.1313.1|Name=mRNA_H-canaliculatus_F_contig11488.1313.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
MLGLLRNIVTHRRKQKGNNPIHRLADATCGMYLRRLCLLSDTSKRGDYKG
GGGGQQSEARAADNRAYVKDDGCSGCPRSAKSSQSSWARITFDSAQYTAV
RRDQCSSQRRTAAAKAGQNHRYRRPRHRPHNDCHHESHHDHDHHQHHRHG
HQHHKRHVSTRST*
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mRNA from alignment at H-canaliculatus_F_contig11488:661..1433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11488.1313.1 ID=mRNA_H-canaliculatus_F_contig11488.1313.1|Name=mRNA_H-canaliculatus_F_contig11488.1313.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=773bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11488:661..1433+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGTATCCGTGCTAAAATTCAGGCTGGCATGAACCAAGCGCAAAGCATG
ACATTCATCCTCCCAAGAATGTTCCACCCAAAAGCGTGCTTTTTACTGTG
TCCTGGGTAGCAGCTCAGAATGGTGTGCCTTATTTTGTTGTGCCGTCACC
GCCGGAGATCCATGGGTTACAAACATGGGTAACAACATAACTATGCGATG
CTTCACGAGTGCCAGAGATTCTGAACACTCGAAGCCCGATCATGCCCCCT
TCTAGGAGTTGCTGTTGTCCACTCGGCCGCCATGCTTGGTCTGCTTCGAA
ATATTGTAACACATCGCCGAAAGCAAAAAGGCAACAACCCCATTCATCGC
CTTGCTGACGCAACGTGTGGCATGTATTTACGCCGCCTCTGCTTGCTCAG
CGACACCTCGAAGCGAGGAGATTACAAAGGAGGGGGGGGGGGGCAACAGT
CTGAGGCAAGAGCAGCAGACAATCGGGCCTATGTCAAGGATGACGGATGC
AGTGGGTGTCCCCGGAGCGCAAAATCCTCTCAAAGCTCCTGGGCACGGAT
CACATTCGACTCAGCTCAGTACACGGCGGTGCGCCGCGATCAGTGCTCCA
GCCAACGACGAACGGCAGCAGCGAAAGCTGGCCAGAACCACCGGTACCGT
CGCCCCCGCCACCGCCCCCACAACGACTGCCACCACGAAAGCCACCACGA
TCATGACCACCACCAACACCATCGCCATGGCCATCAACACCACAAGAGAC
ATGTATCTACTCGGAGTACGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11488:661..1433+

>mRNA_H-canaliculatus_F_contig11488.1313.1 ID=mRNA_H-canaliculatus_F_contig11488.1313.1|Name=mRNA_H-canaliculatus_F_contig11488.1313.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11488:661..1433+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTGGTCTGCTTCGAAATATTGTAACACATCGCCGAAAGCAAAAAGG
CAACAACCCCATTCATCGCCTTGCTGACGCAACGTGTGGCATGTATTTAC
GCCGCCTCTGCTTGCTCAGCGACACCTCGAAGCGAGGAGATTACAAAGGA
GGGGGGGGGGGGCAACAGTCTGAGGCAAGAGCAGCAGACAATCGGGCCTA
TGTCAAGGATGACGGATGCAGTGGGTGTCCCCGGAGCGCAAAATCCTCTC
AAAGCTCCTGGGCACGGATCACATTCGACTCAGCTCAGTACACGGCGGTG
CGCCGCGATCAGTGCTCCAGCCAACGACGAACGGCAGCAGCGAAAGCTGG
CCAGAACCACCGGTACCGTCGCCCCCGCCACCGCCCCCACAACGACTGCC
ACCACGAAAGCCACCACGATCATGACCACCACCAACACCATCGCCATGGC
CATCAACACCACAAGAGACATGTATCTACTCGGAGTACGTAAATGCTTGG
TCTGCTTCGAAATATTGTAACACATCGCCGAAAGCAAAAAGGCAACAACC
CCATTCATCGCCTTGCTGACGCAACGTGTGGCATGTATTTACGCCGCCTC
TGCTTGCTCAGCGACACCTCGAAGCGAGGAGATTACAAAGGAGGGGGGGG
GGGGCAACAGTCTGAGGCAAGAGCAGCAGACAATCGGGCCTATGTCAAGG
ATGACGGATGCAGTGGGTGTCCCCGGAGCGCAAAATCCTCTCAAAGCTCC
TGGGCACGGATCACATTCGACTCAGCTCAGTACACGGCGGTGCGCCGCGA
TCAGTGCTCCAGCCAACGACGAACGGCAGCAGCGAAAGCTGGCCAGAACC
ACCGGTACCGTCGCCCCCGCCACCGCCCCCACAACGACTGCCACCACGAA
AGCCACCACGATCATGACCACCACCAACACCATCGCCATGGCCATCAACA
CCACAAGAGACATGTATCTACTCGGAGTACGTAA
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