mRNA_H-canaliculatus_F_contig11482.1307.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: D7G0G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G5_ECTSI) HSP 1 Score: 132 bits (333), Expect = 3.100e-35 Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 3
Query: 15 QEPRSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKDSKDLGDDALAGPTSFRVMRLLDRQLEN 281
Q+ R E K+DL SAYCGLLYVCGRAQRPDAA+KVVF+L+K+G++PSS LSNTYFKA+KDS++ DD AGP FRVMRLLDRQLEN
Sbjct: 289 QQTRRPQENLKKDLFSAYCGLLYVCGRAQRPDAALKVVFALKKDGIRPSSALSNTYFKARKDSRESEDDPQAGPARFRVMRLLDRQLEN 377
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A6H5JWF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF2_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.380e-34 Identity = 64/89 (71.91%), Postives = 76/89 (85.39%), Query Frame = 3
Query: 15 QEPRSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKDSKDLGDDALAGPTSFRVMRLLDRQLEN 281
Q+ R E RK+DL SAYCGLLYVCGRAQRPDAA+KVVF+L+K+G++PSS LSNTYFKA+KDS++ DD AGP FR+MRLLDRQLEN
Sbjct: 690 QQTRRPQENRKKDLFSAYCGLLYVCGRAQRPDAALKVVFALKKDGIRPSSALSNTYFKARKDSRESEDDPQAGPARFRMMRLLDRQLEN 778
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: B8C0B3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0B3_THAPS) HSP 1 Score: 63.2 bits (152), Expect = 1.420e-9 Identity = 27/60 (45.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query: 39 KRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKDSKDLGD 218
KR +LI+AY GL++VCGRA RPD A+++ ++++K GV+P+ N Y+ K+ + D+GD
Sbjct: 681 KRSANLIAAYNGLMHVCGRAVRPDIALRIAYAMKKAGVEPTEVSLNCYYAGKRLTLDVGD 740
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A7S2UR82_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UR82_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 1.030e-8 Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 3
Query: 15 QEPRSILEKRK-QDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKD-SKDLGDDALAGPTSFRVMRLLDRQLEN 281
QE +++ +R Q++I+AY GL +VCGRA RPD A+++V+++ KEG+ S T N Y K + SK+ D+ + + +L Q E+
Sbjct: 34 QEKQTVSRRRDGQNIIAAYHGLFHVCGRANRPDMALRLVYAMAKEGMDASETSLNCYMAGKGEASKEPRDEKEKRSLKDKSLAILAEQYES 124
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A7S2URA9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URA9_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 6.060e-8 Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 3
Query: 15 QEPRSILEKRK-QDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKD-SKDLGDDALAGPTSFRVMRLLDRQLEN 281
QE +++ +R Q++I+AY GL +VCGRA RPD A+++V+++ KEG+ S T N Y K + SK+ D+ + + +L Q E+
Sbjct: 813 QEKQTVSRRRDGQNIIAAYHGLFHVCGRANRPDMALRLVYAMAKEGMDASETSLNCYMAGKGEASKEPRDEKEKRSLKDKSLAILAEQYES 903
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: B7FYN3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYN3_PHATC) HSP 1 Score: 57.8 bits (138), Expect = 1.120e-7 Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 3
Query: 24 RSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKDSKDL 212
+S + ++LI+AY GLLYVCGRA RPD A+++V+++ KEG++P N Y KK +++
Sbjct: 706 KSPSRSKGKNLIAAYNGLLYVCGRALRPDVALRLVYAMSKEGLEPDELSLNCYKSGKKIQQNM 768
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A835Z8W0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W0_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.540e-7 Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 3
Query: 51 DLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKK 197
+L Y GLLYVCGRA RPDAAVKVV+++ K+G+ S +++ YF A++
Sbjct: 748 NLFRGYTGLLYVCGRALRPDAAVKVVYAMAKDGLTLSPEVASAYFNARR 796
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A448ZIQ5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZIQ5_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 2.120e-7 Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 3
Query: 18 EPRSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTY 182
E R+ L RK ++++AY GLLYVCGRA+RPD AV++V++++KEG++ + N Y
Sbjct: 942 ENRTRLSTRK-NMLAAYNGLLYVCGRAERPDIAVRIVYAMKKEGLEINENPYNCY 995
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A7R9ZBQ9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBQ9_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 9.550e-7 Identity = 26/56 (46.43%), Postives = 42/56 (75.00%), Query Frame = 3
Query: 51 DLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKDSKDLGD 218
+L++AY GLL+VCGRA RPD A+++V+++ KEG++ + T N Y A K +++ GD
Sbjct: 74 NLLAAYHGLLHVCGRADRPDVALRLVYAMGKEGLEATETSLNCY-NAGKRTRENGD 128
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A1E7FI57_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FI57_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 1.390e-6 Identity = 25/59 (42.37%), Postives = 47/59 (79.66%), Query Frame = 3
Query: 12 MQEPRSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLR-KEGVKPSSTLSNTYF 185
++EP+S ++ + ++++AY GL+YVCGRA+RPD AV++V++++ KEG++P+ N Y+
Sbjct: 1063 LKEPKSAVKNK--NMLAAYNGLIYVCGRAERPDIAVRIVYAMKNKEGLEPNE---NPYY 1116 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11482.1307.1 >prot_H-canaliculatus_F_contig11482.1307.1 ID=prot_H-canaliculatus_F_contig11482.1307.1|Name=mRNA_H-canaliculatus_F_contig11482.1307.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp MQEPRSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSback to top mRNA from alignment at H-canaliculatus_F_contig11482:563..1233+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig11482.1307.1 ID=mRNA_H-canaliculatus_F_contig11482.1307.1|Name=mRNA_H-canaliculatus_F_contig11482.1307.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=671bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11482:563..1233+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11482:563..1233+ >mRNA_H-canaliculatus_F_contig11482.1307.1 ID=mRNA_H-canaliculatus_F_contig11482.1307.1|Name=mRNA_H-canaliculatus_F_contig11482.1307.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11482:563..1233+ (Hapterophycus canaliculatus Oshoro5f female)back to top |