mRNA_H-canaliculatus_F_contig11482.1307.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11482.1307.1
Unique NamemRNA_H-canaliculatus_F_contig11482.1307.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: D7G0G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G5_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.100e-35
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 3
Query:   15 QEPRSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKDSKDLGDDALAGPTSFRVMRLLDRQLEN 281
            Q+ R   E  K+DL SAYCGLLYVCGRAQRPDAA+KVVF+L+K+G++PSS LSNTYFKA+KDS++  DD  AGP  FRVMRLLDRQLEN
Sbjct:  289 QQTRRPQENLKKDLFSAYCGLLYVCGRAQRPDAALKVVFALKKDGIRPSSALSNTYFKARKDSRESEDDPQAGPARFRVMRLLDRQLEN 377          
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A6H5JWF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF2_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.380e-34
Identity = 64/89 (71.91%), Postives = 76/89 (85.39%), Query Frame = 3
Query:   15 QEPRSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKDSKDLGDDALAGPTSFRVMRLLDRQLEN 281
            Q+ R   E RK+DL SAYCGLLYVCGRAQRPDAA+KVVF+L+K+G++PSS LSNTYFKA+KDS++  DD  AGP  FR+MRLLDRQLEN
Sbjct:  690 QQTRRPQENRKKDLFSAYCGLLYVCGRAQRPDAALKVVFALKKDGIRPSSALSNTYFKARKDSRESEDDPQAGPARFRMMRLLDRQLEN 778          
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: B8C0B3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0B3_THAPS)

HSP 1 Score: 63.2 bits (152), Expect = 1.420e-9
Identity = 27/60 (45.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query:   39 KRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKDSKDLGD 218
            KR  +LI+AY GL++VCGRA RPD A+++ ++++K GV+P+    N Y+  K+ + D+GD
Sbjct:  681 KRSANLIAAYNGLMHVCGRAVRPDIALRIAYAMKKAGVEPTEVSLNCYYAGKRLTLDVGD 740          
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A7S2UR82_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UR82_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.030e-8
Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 3
Query:   15 QEPRSILEKRK-QDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKD-SKDLGDDALAGPTSFRVMRLLDRQLEN 281
            QE +++  +R  Q++I+AY GL +VCGRA RPD A+++V+++ KEG+  S T  N Y   K + SK+  D+        + + +L  Q E+
Sbjct:   34 QEKQTVSRRRDGQNIIAAYHGLFHVCGRANRPDMALRLVYAMAKEGMDASETSLNCYMAGKGEASKEPRDEKEKRSLKDKSLAILAEQYES 124          
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A7S2URA9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URA9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.060e-8
Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 3
Query:   15 QEPRSILEKRK-QDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKD-SKDLGDDALAGPTSFRVMRLLDRQLEN 281
            QE +++  +R  Q++I+AY GL +VCGRA RPD A+++V+++ KEG+  S T  N Y   K + SK+  D+        + + +L  Q E+
Sbjct:  813 QEKQTVSRRRDGQNIIAAYHGLFHVCGRANRPDMALRLVYAMAKEGMDASETSLNCYMAGKGEASKEPRDEKEKRSLKDKSLAILAEQYES 903          
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: B7FYN3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYN3_PHATC)

HSP 1 Score: 57.8 bits (138), Expect = 1.120e-7
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 3
Query:   24 RSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKDSKDL 212
            +S    + ++LI+AY GLLYVCGRA RPD A+++V+++ KEG++P     N Y   KK  +++
Sbjct:  706 KSPSRSKGKNLIAAYNGLLYVCGRALRPDVALRLVYAMSKEGLEPDELSLNCYKSGKKIQQNM 768          
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A835Z8W0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.540e-7
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 3
Query:   51 DLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKK 197
            +L   Y GLLYVCGRA RPDAAVKVV+++ K+G+  S  +++ YF A++
Sbjct:  748 NLFRGYTGLLYVCGRALRPDAAVKVVYAMAKDGLTLSPEVASAYFNARR 796          
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A448ZIQ5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZIQ5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.120e-7
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 3
Query:   18 EPRSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTY 182
            E R+ L  RK ++++AY GLLYVCGRA+RPD AV++V++++KEG++ +    N Y
Sbjct:  942 ENRTRLSTRK-NMLAAYNGLLYVCGRAERPDIAVRIVYAMKKEGLEINENPYNCY 995          
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A7R9ZBQ9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBQ9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.550e-7
Identity = 26/56 (46.43%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   51 DLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPSSTLSNTYFKAKKDSKDLGD 218
            +L++AY GLL+VCGRA RPD A+++V+++ KEG++ + T  N Y  A K +++ GD
Sbjct:   74 NLLAAYHGLLHVCGRADRPDVALRLVYAMGKEGLEATETSLNCY-NAGKRTRENGD 128          
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Match: A0A1E7FI57_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FI57_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.390e-6
Identity = 25/59 (42.37%), Postives = 47/59 (79.66%), Query Frame = 3
Query:   12 MQEPRSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLR-KEGVKPSSTLSNTYF 185
            ++EP+S ++ +  ++++AY GL+YVCGRA+RPD AV++V++++ KEG++P+    N Y+
Sbjct: 1063 LKEPKSAVKNK--NMLAAYNGLIYVCGRAERPDIAVRIVYAMKNKEGLEPNE---NPYY 1116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11482.1307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G0G5_ECTSI3.100e-3571.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWF2_9PHAE1.380e-3471.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B8C0B3_THAPS1.420e-945.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2UR82_9STRA1.030e-836.26Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2URA9_9STRA6.060e-836.26Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B7FYN3_PHATC1.120e-742.86Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A835Z8W0_9STRA1.540e-753.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A448ZIQ5_9STRA2.120e-749.09Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7R9ZBQ9_9STRA9.550e-746.43Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1E7FI57_9STRA1.390e-642.37Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11482contigH-canaliculatus_F_contig11482:563..1233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.6e-29
Seed eggNOG ortholog2880.D7G0G5
EggNOG free text desc.Pentatricopeptide repeat domain
EggNOG OGs2E0D5@1,2S7TS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size283
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11482.1307.1prot_H-canaliculatus_F_contig11482.1307.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11482 574..1233 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928834.7564566-UTR-H-canaliculatus_F_contig11482:562..5731622928834.7564566-UTR-H-canaliculatus_F_contig11482:562..573Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11482 563..573 +
1696845582.4275687-UTR-H-canaliculatus_F_contig11482:562..5731696845582.4275687-UTR-H-canaliculatus_F_contig11482:562..573Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11482 563..573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928834.7671888-CDS-H-canaliculatus_F_contig11482:573..6471622928834.7671888-CDS-H-canaliculatus_F_contig11482:573..647Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11482 574..647 +
1696845582.441847-CDS-H-canaliculatus_F_contig11482:573..6471696845582.441847-CDS-H-canaliculatus_F_contig11482:573..647Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11482 574..647 +
1622928834.7773159-CDS-H-canaliculatus_F_contig11482:735..8471622928834.7773159-CDS-H-canaliculatus_F_contig11482:735..847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11482 736..847 +
1696845582.452511-CDS-H-canaliculatus_F_contig11482:735..8471696845582.452511-CDS-H-canaliculatus_F_contig11482:735..847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11482 736..847 +
1622928834.7859826-CDS-H-canaliculatus_F_contig11482:1149..12331622928834.7859826-CDS-H-canaliculatus_F_contig11482:1149..1233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11482 1150..1233 +
1696845582.4638147-CDS-H-canaliculatus_F_contig11482:1149..12331696845582.4638147-CDS-H-canaliculatus_F_contig11482:1149..1233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11482 1150..1233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11482.1307.1

>prot_H-canaliculatus_F_contig11482.1307.1 ID=prot_H-canaliculatus_F_contig11482.1307.1|Name=mRNA_H-canaliculatus_F_contig11482.1307.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
MQEPRSILEKRKQDLISAYCGLLYVCGRAQRPDAAVKVVFSLRKEGVKPS
STLSNTYFKAKKDSKDLGDDALAGPTSFRVMRLLDRQLEN
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mRNA from alignment at H-canaliculatus_F_contig11482:563..1233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11482.1307.1 ID=mRNA_H-canaliculatus_F_contig11482.1307.1|Name=mRNA_H-canaliculatus_F_contig11482.1307.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=671bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11482:563..1233+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGTTTTGATGCAAGAACCTCGAAGCATCCTGGAGAAACGCAAGCAG GACCTTATCTCTGCGTATTGTGGACTACTGTACGTGTGAGTGCAGGTACA GTCACCGTCCAGCGTGTGTCCCTCTTTGTTGCCTGTGGACGTCCTTAACC AACTTCGCGCGATCTTGTCGCAGGTGTGGTCGGGCGCAACGTCCGGATGC CGCGGTCAAGGTCGTATTCTCACTACGAAAAGAAGGAGTAAAACCATCCT CGACCCTTTCCAACACGTATTTCAAGGCGAAGAAGGTGTGTTCCTAGCTA TATGTGTCGTAGGGATTTCGTTAGCAGCCCAGTATTTGTGGGCAGAACGA ATTCCAACCGTATTTGTTTGTTTCGAACAACAGCAGGACGGTTTTCGCTT GATCTCGATAGCAAATGCGAGTCCCTAGAAATAACGCAAATAATTGACAA AGAAATGTTCAGACGGGTGTGGTTCGTTTAGAGAGCAGGGCCAGTTGAAA ATCGGACCGGACTCGGCAGAGCAGGTGGATCCAGATTTTGTTGGCGATTT GGCCAACTGTCGTTCCCTGCGCCTTGATCGTTTCCAGGACAGCAAGGATT TGGGGGACGACGCACTAGCTGGGCCCACGTCGTTCCGCGTGATGCGGCTG CTAGATCGGCAATTGGAAAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11482:563..1233+

>mRNA_H-canaliculatus_F_contig11482.1307.1 ID=mRNA_H-canaliculatus_F_contig11482.1307.1|Name=mRNA_H-canaliculatus_F_contig11482.1307.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11482:563..1233+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAAGAACCTCGAAGCATCCTGGAGAAACGCAAGCAGGACCTTATCTC
TGCGTATTGTGGACTACTGTACGTATGCAAGAACCTCGAAGCATCCTGGA
GAAACGCAAGCAGGACCTTATCTCTGCGTATTGTGGACTACTGTACGTGT
GTGGTCGGGCGCAACGTCCGGATGCCGCGGTCAAGGTCGTATTCTCACTA
CGAAAAGAAGGAGTAAAACCATCCTCGACCCTTTCCAACACGTATTTCAA
GGCGAAGAAGGTGTGGTCGGGCGCAACGTCCGGATGCCGCGGTCAAGGTC
GTATTCTCACTACGAAAAGAAGGAGTAAAACCATCCTCGACCCTTTCCAA
CACGTATTTCAAGGCGAAGAAGGACAGCAAGGATTTGGGGGACGACGCAC
TAGCTGGGCCCACGTCGTTCCGCGTGATGCGGCTGCTAGATCGGCAATTG
GAAAACGACAGCAAGGATTTGGGGGACGACGCACTAGCTGGGCCCACGTC
GTTCCGCGTGATGCGGCTGCTAGATCGGCAATTGGAAAAC
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