mRNA_H-canaliculatus_F_contig1148.1305.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1148.1305.1
Unique NamemRNA_H-canaliculatus_F_contig1148.1305.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1148.1305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1148contigH-canaliculatus_F_contig1148:28935..29430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size169
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928831.4920218-CDS-H-canaliculatus_F_contig1148:28934..290151622928831.4920218-CDS-H-canaliculatus_F_contig1148:28934..29015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 28935..29015 -
1696845582.0375812-CDS-H-canaliculatus_F_contig1148:28934..290151696845582.0375812-CDS-H-canaliculatus_F_contig1148:28934..29015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 28935..29015 -
1622928831.531082-CDS-H-canaliculatus_F_contig1148:29343..294301622928831.531082-CDS-H-canaliculatus_F_contig1148:29343..29430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 29344..29430 -
1696845582.0483723-CDS-H-canaliculatus_F_contig1148:29343..294301696845582.0483723-CDS-H-canaliculatus_F_contig1148:29343..29430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 29344..29430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1148.1305.1prot_H-canaliculatus_F_contig1148.1305.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1148 28935..29430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1148.1305.1

>prot_H-canaliculatus_F_contig1148.1305.1 ID=prot_H-canaliculatus_F_contig1148.1305.1|Name=mRNA_H-canaliculatus_F_contig1148.1305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=56bp
EEQPYKPDKPNQTVRPGFPHHDRCSGKQVYDGVEAERLEGLVCLQPVDSR
GGLHS*
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mRNA from alignment at H-canaliculatus_F_contig1148:28935..29430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1148.1305.1 ID=mRNA_H-canaliculatus_F_contig1148.1305.1|Name=mRNA_H-canaliculatus_F_contig1148.1305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=496bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1148:28935..29430- (Hapterophycus canaliculatus Oshoro5f female)
GAAGAGCAGCCCTACAAACCAGACAAACCGAACCAGACAGTGCGTCCAGG
ATTTCCACATCACGATCGCTGCTCTGGAAAACAGGTGGTGGGTGAGCGAC
CCTGTCATCTACTTGGTACTGTTTCTTCACGCCCTTTGTCAAAAACACCA
CGCTCATACCATCCATCCCTTTGTCGCGCTCAAAGTGGCTTGAGTGGCGG
AGAATTCTCTGAACAACTCCTGTCAATTACACCTCCCATTTTTCGCCCGA
CTTTTCGCTCCGAATGCTCAATGCATCAGCAGGCAAAGGCATCGACGACG
TCCACAGCGTCCAGTCGCTCGTTTTAGTGAGACCTGTCCTCCCTCCTTCT
CAGCTTGCCCCTCTTTTTCCGTCCCTTTCCTCTTTCCGTCGCTGGCTCGG
TCGCTTCACCAGCAGTATGACGGCGTGGAGGCAGAGAGGCTAGAAGGGCT
CGTGTGCTTGCAGCCCGTCGACAGCCGAGGTGGGCTTCACTCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1148:28935..29430-

>mRNA_H-canaliculatus_F_contig1148.1305.1 ID=mRNA_H-canaliculatus_F_contig1148.1305.1|Name=mRNA_H-canaliculatus_F_contig1148.1305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1148:28935..29430- (Hapterophycus canaliculatus Oshoro5f female)
GAAGAGCAGCCCTACAAACCAGACAAACCGAACCAGACAGTGCGTCCAGG
ATTTCCACATCACGATCGCTGCTCTGGAAAACAGGTGGAAGAGCAGCCCT
ACAAACCAGACAAACCGAACCAGACAGTGCGTCCAGGATTTCCACATCAC
GATCGCTGCTCTGGAAAACAGGTGTATGACGGCGTGGAGGCAGAGAGGCT
AGAAGGGCTCGTGTGCTTGCAGCCCGTCGACAGCCGAGGTGGGCTTCACT
CGTGATATGACGGCGTGGAGGCAGAGAGGCTAGAAGGGCTCGTGTGCTTG
CAGCCCGTCGACAGCCGAGGTGGGCTTCACTCGTGA
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