mRNA_H-canaliculatus_F_contig1148.1304.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1148.1304.1
Unique NamemRNA_H-canaliculatus_F_contig1148.1304.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1148.1304.1 vs. uniprot
Match: D8LB52_ECTSI (Urease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB52_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.060e-23
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 2 
Query:   86 RVEAVKGCRGIGKKDMTLNEKLPKMTMNPETYEARADGELLTCEPAETLLLSQKFFLF 259
            RVEAVKGCRG+GKKDM LN+KLPKMT++PETYE RADGELLTC+PA+TL L+QK+FLF
Sbjct:  791 RVEAVKGCRGVGKKDMKLNDKLPKMTVDPETYEVRADGELLTCKPADTLPLAQKYFLF 848
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BLAST of mRNA_H-canaliculatus_F_contig1148.1304.1 vs. uniprot
Match: A0A7C6BAU5_9RHOB (Urease subunit alpha n=1 Tax=Rhodobacterales bacterium TaxID=1948890 RepID=A0A7C6BAU5_9RHOB)

HSP 1 Score: 87.8 bits (216), Expect = 3.530e-18
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 2 
Query:   95 AVKGCRGIGKKDMTLNEKLPKMTMNPETYEARADGELLTCEPAETLLLSQKFFLF 259
            AV+G RGIGKKDM LN+ LPK+ +NPETYE RADGELLTCEPAE L ++Q++FLF
Sbjct:  515 AVQGTRGIGKKDMVLNDALPKIEVNPETYEVRADGELLTCEPAEELPMAQRYFLF 569
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BLAST of mRNA_H-canaliculatus_F_contig1148.1304.1 vs. uniprot
Match: A0A0M6YKH4_9RHOB (Urease subunit alpha n=4 Tax=Jannaschia TaxID=188905 RepID=A0A0M6YKH4_9RHOB)

HSP 1 Score: 87.4 bits (215), Expect = 4.820e-18
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 2 
Query:    8 TVDRGLCPAPVQGSV-VRLDSASASHTRVEAVKGCRGIGKKDMTLNEKLPKMTMNPETYEARADGELLTCEPAETLLLSQKFFLF 259
            +V+RG      Q +V   L  A  +   + AVKG RGIGK+DM LN+ LP++ ++PETYE RADGELLTCEPAE L ++Q++FLF
Sbjct:  485 SVERGAVVFASQSAVDAGLSEALGTAKDLVAVKGTRGIGKRDMVLNDALPQIEVDPETYEVRADGELLTCEPAEVLPMAQRYFLF 569
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BLAST of mRNA_H-canaliculatus_F_contig1148.1304.1 vs. uniprot
Match: A0A318VQP9_9GAMM (Urease subunit alpha n=8 Tax=Thioalkalivibrio TaxID=106633 RepID=A0A318VQP9_9GAMM)

HSP 1 Score: 87.0 bits (214), Expect = 6.590e-18
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 2 
Query:   86 RVEAVKGCRGIGKKDMTLNEKLPKMTMNPETYEARADGELLTCEPAETLLLSQKFFLF 259
            R+ AV+GCR IGK+DM LN+ LPKM ++PETYE RADGELLTCEPA  L LSQ++FLF
Sbjct:  511 RLVAVRGCREIGKQDMRLNDWLPKMEVDPETYEVRADGELLTCEPATELPLSQRYFLF 568
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BLAST of mRNA_H-canaliculatus_F_contig1148.1304.1 vs. uniprot
Match: A0A858SPQ3_9RHOB (Urease subunit alpha n=1 Tax=Roseobacter ponti TaxID=1891787 RepID=A0A858SPQ3_9RHOB)

HSP 1 Score: 85.9 bits (211), Expect = 1.680e-17
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:   38 VQGSVVRLDSASASHT----------RVEAVKGCRGIGKKDMTLNEKLPKMTMNPETYEARADGELLTCEPAETLLLSQKFFLF 259
            V+ S V   SA+A              V AVKG RGIGKKD+ LN+ LP++ +NPETYE RADGELLTC+PAE L ++Q++F+F
Sbjct:  486 VENSAVTFVSAAAEAAGIRDTLGLAKNVVAVKGTRGIGKKDLILNDALPQIEVNPETYEVRADGELLTCQPAEVLPMAQRYFMF 569
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BLAST of mRNA_H-canaliculatus_F_contig1148.1304.1 vs. uniprot
Match: URE1_ANASK (Urease subunit alpha n=2 Tax=unclassified Anaeromyxobacter TaxID=2620896 RepID=URE1_ANASK)

HSP 1 Score: 85.9 bits (211), Expect = 1.680e-17
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 2 
Query:   86 RVEAVKGCRGIGKKDMTLNEKLPKMTMNPETYEARADGELLTCEPAETLLLSQKFFLF 259
            R+ AV+GCRG+GK+DM LN+ LP+M ++PETYE RADGELL CEPA  L L+Q++FLF
Sbjct:  514 RLVAVRGCRGLGKRDMRLNDALPRMEVDPETYEVRADGELLRCEPAARLPLAQRYFLF 571
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BLAST of mRNA_H-canaliculatus_F_contig1148.1304.1 vs. uniprot
Match: A0A1M7TTV8_9RHOB (Urease subunit alpha n=2 Tax=Oceanicella actignis TaxID=1189325 RepID=A0A1M7TTV8_9RHOB)

HSP 1 Score: 85.1 bits (209), Expect = 3.130e-17
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:   38 VQGSVVRLDSASAS----------HTRVEAVKGCRGIGKKDMTLNEKLPKMTMNPETYEARADGELLTCEPAETLLLSQKFFLF 259
            V+ S V   SA+A             R  AV G RGIGK+DM LN  LPK+ ++PETYE RADGELLTCEPAE L ++Q++FLF
Sbjct:  486 VEASAVTFVSAAAEAAGIGARLGLRKRTAAVGGVRGIGKRDMALNAALPKIEVDPETYEVRADGELLTCEPAEALPMAQRYFLF 569
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BLAST of mRNA_H-canaliculatus_F_contig1148.1304.1 vs. uniprot
Match: A0A0F9B6P6_9ZZZZ (Urease (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9B6P6_9ZZZZ)

HSP 1 Score: 83.6 bits (205), Expect = 3.760e-17
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 2 
Query:   95 AVKGCRGIGKKDMTLNEKLPKMTMNPETYEARADGELLTCEPAETLLLSQKFFLF 259
            AV G RG+GK+DM LN+ LP++ +NPETYE RADGELLTCEPAE L ++Q++FLF
Sbjct:  252 AVTGTRGLGKRDMKLNDALPRIEVNPETYEVRADGELLTCEPAEILPMAQRYFLF 306
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BLAST of mRNA_H-canaliculatus_F_contig1148.1304.1 vs. uniprot
Match: URE1_ROSDO (Urease subunit alpha n=2 Tax=Roseobacter TaxID=2433 RepID=URE1_ROSDO)

HSP 1 Score: 84.7 bits (208), Expect = 4.280e-17
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 2 
Query:   95 AVKGCRGIGKKDMTLNEKLPKMTMNPETYEARADGELLTCEPAETLLLSQKFFLF 259
            AVKG RGIGKKD+ LN+ LP + +NPETYE RADGELLTC+PAE L ++Q++FLF
Sbjct:  515 AVKGTRGIGKKDLILNDALPHIEVNPETYEVRADGELLTCQPAEVLPMAQRYFLF 569
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1148.1304.1 vs. uniprot
Match: F7ZK49_ROSLO (Urease subunit alpha n=6 Tax=Roseobacter TaxID=2433 RepID=F7ZK49_ROSLO)

HSP 1 Score: 84.7 bits (208), Expect = 4.280e-17
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 2 
Query:   95 AVKGCRGIGKKDMTLNEKLPKMTMNPETYEARADGELLTCEPAETLLLSQKFFLF 259
            AVKG RGIGKKD+ LN+ LP + +NPETYE RADGELLTC+PAE L ++Q++FLF
Sbjct:  515 AVKGTRGIGKKDLILNDALPHIEVNPETYEVRADGELLTCQPAEVLPMAQRYFLF 569
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1148.1304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB52_ECTSI1.060e-2381.03Urease n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A7C6BAU5_9RHOB3.530e-1872.73Urease subunit alpha n=1 Tax=Rhodobacterales bacte... [more]
A0A0M6YKH4_9RHOB4.820e-1852.94Urease subunit alpha n=4 Tax=Jannaschia TaxID=1889... [more]
A0A318VQP9_9GAMM6.590e-1870.69Urease subunit alpha n=8 Tax=Thioalkalivibrio TaxI... [more]
A0A858SPQ3_9RHOB1.680e-1752.38Urease subunit alpha n=1 Tax=Roseobacter ponti Tax... [more]
URE1_ANASK1.680e-1765.52Urease subunit alpha n=2 Tax=unclassified Anaeromy... [more]
A0A1M7TTV8_9RHOB3.130e-1753.57Urease subunit alpha n=2 Tax=Oceanicella actignis ... [more]
A0A0F9B6P6_9ZZZZ3.760e-1767.27Urease (Fragment) n=1 Tax=marine sediment metageno... [more]
URE1_ROSDO4.280e-1769.09Urease subunit alpha n=2 Tax=Roseobacter TaxID=243... [more]
F7ZK49_ROSLO4.280e-1769.09Urease subunit alpha n=6 Tax=Roseobacter TaxID=243... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1148contigH-canaliculatus_F_contig1148:26947..28813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size294
Cds size294
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1148.1304.1prot_H-canaliculatus_F_contig1148.1304.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1148 26947..28813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928831.4206128-CDS-H-canaliculatus_F_contig1148:26946..270561622928831.4206128-CDS-H-canaliculatus_F_contig1148:26946..27056Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 26947..27056 -
1696845582.004655-CDS-H-canaliculatus_F_contig1148:26946..270561696845582.004655-CDS-H-canaliculatus_F_contig1148:26946..27056Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 26947..27056 -
1622928831.4367714-CDS-H-canaliculatus_F_contig1148:28037..281341622928831.4367714-CDS-H-canaliculatus_F_contig1148:28037..28134Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 28038..28134 -
1696845582.0164027-CDS-H-canaliculatus_F_contig1148:28037..281341696845582.0164027-CDS-H-canaliculatus_F_contig1148:28037..28134Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 28038..28134 -
1622928831.4534888-CDS-H-canaliculatus_F_contig1148:28726..288131622928831.4534888-CDS-H-canaliculatus_F_contig1148:28726..28813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 28727..28813 -
1696845582.027081-CDS-H-canaliculatus_F_contig1148:28726..288131696845582.027081-CDS-H-canaliculatus_F_contig1148:28726..28813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 28727..28813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1148.1304.1

>prot_H-canaliculatus_F_contig1148.1304.1 ID=prot_H-canaliculatus_F_contig1148.1304.1|Name=mRNA_H-canaliculatus_F_contig1148.1304.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
AWYGRSWPVPRPRARLSCSLGFCFCFTHAGRSCEGLPWHWKERHDAQREA
AQDDHEPRDLRGEGRRRASDVRAGGDPPAIPEVLPLLGRFRRRKRIA*
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mRNA from alignment at H-canaliculatus_F_contig1148:26947..28813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1148.1304.1 ID=mRNA_H-canaliculatus_F_contig1148.1304.1|Name=mRNA_H-canaliculatus_F_contig1148.1304.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1867bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1148:26947..28813- (Hapterophycus canaliculatus Oshoro5f female)
GCCTGGTACGGTCGATCGTGGCCTGTGCCCCGCCCCCGTGCAAGGCTCAG
TTGTTCGCTTGGATTCTGCTTCTGCTTCACACACGCGGTATGTTCTTTCC
GTCGTCGCCATCGCGATCGTACGGTTGCCGTTATGTGGGATGCTGTGGTT
GTGGCTGTTTTTGGCCTGCTTTTTTCAAGGAAGAGAGATACCGCGACGGA
AGTAACACAATCATATTGCTCGTGAGCATCGCTGGTGGGTTTCGTGCAAG
GGTTCGATGCATCGGCCTGGGCTTCATCCCAAACGGCTTATGACGGTTAC
GCGCTCAAGAAGAGGTGAGAGTACGCAGCCGGCGCTGTGGAGGAGCACTA
GTTTGCTGGTGTATGGTGGTGCAAGTGGTGGTACGTTCAGCGGCGGTGGT
GATTCTGATGGGAGTAGCCAGCTGCCTGACGGACAAGATCGCCCCTCGTG
CCCGACGCCTGGTCCCTGCGAGGACAGAGCATAGTGTCGGTGAACAGGTG
CCTTTTCTCTCTGAGCCAACCGTCTCACGCGTTCAGCTCTTTCTCCTAGA
AAAAAAGCACGGACGTCGCCCGTTTCCCCCTTTTTTGGCTCCTCTCGCCC
CCATTCGCCTGATCCTCCTTGCTCTTGCTGTCGTTTCTCTCCTCTCTCTC
TCTCCTTGGCTCGCTTTACCTGGTCTCAGGGTCGAAGCTGTGAAGGGCTG
CCGTGGCATTGGAAAGAAAGACATGACGCTCAACGAGAAGCTGCCCAAGA
TGACCATGAACCCAGAGACCTACGAGGTCAGAAACGGTGTATGTACGAGA
AAACGAATTAAAATGTGTTGGGAAAGTAACGCAGCACGAGGGCTTGAATT
GAGAAATATGTGCAAGGAATGATCGAAGACTGGAGATAAAAACAAACGAG
CAGAGGAAAAGAGGACAACAAAAAAGTGGAAAGGAAACATACTCGGAGGT
GAGGAACAACCTCTCTTCGATCATCAATTGTGTGCTGTTCTGACAGGTCG
TGAAAAATCGACGGTATCCTCTTTCTCTCGATAATCGCGCGCACGTGCTG
CTTTTGCGCGTTGATTCTGAAACTTTGTTGTATGCTCCGAGTATTTTGGC
CTCATTGCCACCTTCGTCGCATGGTCCGACCGTATCCCTGCCTTCTTATC
ATCCTCCCCTGCCATGCTCTCATGTGCACACGCATTTGGCAAGCATCGAT
AACACCTCGTGCAGTCCTCGCAACCAAGACTGACCTCCTAGATGACTGGA
AACTCTGGTTTGGTAGGAACGCTGCTGGGAACGCTCTAGAACTTCCAGAA
TCATGTCCAGAAGGGTGTTCTTGAATGTTCGGAGCTTCTGGAATATGAAG
GGTAGTTGGTTCGAACATGAGACCACGGAACTCCCGGCTCACACAGACGG
CACTCCTTCTCGTTCCCTTCACCTCACCTCTCGTGTGGGACCTCCAATAC
AAGACATAAACAGCAGTCATCTTTGATCTGAAGGGCATCACAAGGGCATA
CGAACACGTTACCATCTTGTACGATGTTGCGTTCAAAACGCGCCTCGAAA
CCCGCCAGGCTCCGCCCTAGAACAACAAAGTCCGCACACTCACTCGCACC
GCCTTTCTGCCCCGCTCTCCGCCCTACGCTTGGCGGTTCAACTCTGTGGT
GTTGGCTGCGCCGCGAAGTTTTGCGCTATTTTGTGCCGCTTTGGTTCGGG
CGCACTGTTGTGTGCTTCTGCGTGCTGCGTGTGTGTGCGCACATTTATCG
CGCCCAGGCGAGGGCCGACGGCGAGCTTCTGACGTGCGAGCCGGCGGAGA
CCCTCCTGCTATCCCAGAAGTTCTTCCTCTTCTAGGAAGATTTCGAAGGA
GAAAGCGCATCGCCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1148:26947..28813-

>mRNA_H-canaliculatus_F_contig1148.1304.1 ID=mRNA_H-canaliculatus_F_contig1148.1304.1|Name=mRNA_H-canaliculatus_F_contig1148.1304.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1148:26947..28813- (Hapterophycus canaliculatus Oshoro5f female)
GCCTGGTACGGTCGATCGTGGCCTGTGCCCCGCCCCCGTGCAAGGCTCAG
TTGTTCGCTTGGATTCTGCTTCTGCTTCACACACGCGGCCTGGTACGGTC
GATCGTGGCCTGTGCCCCGCCCCCGTGCAAGGCTCAGTTGTTCGCTTGGA
TTCTGCTTCTGCTTCACACACGCGGGTCGAAGCTGTGAAGGGCTGCCGTG
GCATTGGAAAGAAAGACATGACGCTCAACGAGAAGCTGCCCAAGATGACC
ATGAACCCAGAGACCTACGAGGGTCGAAGCTGTGAAGGGCTGCCGTGGCA
TTGGAAAGAAAGACATGACGCTCAACGAGAAGCTGCCCAAGATGACCATG
AACCCAGAGACCTACGAGGCGAGGGCCGACGGCGAGCTTCTGACGTGCGA
GCCGGCGGAGACCCTCCTGCTATCCCAGAAGTTCTTCCTCTTCTAGGAAG
ATTTCGAAGGAGAAAGCGCATCGCCTGAGCGAGGGCCGACGGCGAGCTTC
TGACGTGCGAGCCGGCGGAGACCCTCCTGCTATCCCAGAAGTTCTTCCTC
TTCTAGGAAGATTTCGAAGGAGAAAGCGCATCGCCTGA
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