mRNA_H-canaliculatus_F_contig1148.1299.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1148.1299.1
Unique NamemRNA_H-canaliculatus_F_contig1148.1299.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1148.1299.1 vs. uniprot
Match: D8LB29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB29_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 5.930e-50
Identity = 98/116 (84.48%), Postives = 103/116 (88.79%), Query Frame = 3 
Query:   96 MATSAGAAAGRPKQGVVAELTLAKSGQSTPLTAISLSSDQRVGVVGGHGIMKVIRLAPEGLSEVATLKAGRRKGPGSAGSKLSMYDVAWCPTGGHVAASLSNGGVAIWDLQHLPSS 443
            MA SA  A G P +GVVAELTLAKSGQSTPLTAISLSSDQR+  VGGHGIMKVIRLAPEGLSEVATLK GRRK  GSAGSKLSMYDVAW P+GG+VAASLSNGGVA+WDLQHL SS
Sbjct:    1 MAISA-MAPGTPNRGVVAELTLAKSGQSTPLTAISLSSDQRLAAVGGHGIMKVIRLAPEGLSEVATLKTGRRKITGSAGSKLSMYDVAWRPSGGNVAASLSNGGVAMWDLQHLSSS 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1148.1299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB29_ECTSI5.930e-5084.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1148contigH-canaliculatus_F_contig1148:873..3831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue5.4e-43
Seed eggNOG ortholog2880.D8LB29
KEGG koko:K20408
KEGG Pathwayko04150,map04150
EggNOG free text desc.positive regulation of TOR signaling
EggNOG OGsKOG0269@1,KOG0269@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons3
Model size447
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1148.1299.1prot_H-canaliculatus_F_contig1148.1299.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1148 873..3736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928831.5758712-CDS-H-canaliculatus_F_contig1148:872..9751622928831.5758712-CDS-H-canaliculatus_F_contig1148:872..975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 873..975 -
1696845582.0586462-CDS-H-canaliculatus_F_contig1148:872..9751696845582.0586462-CDS-H-canaliculatus_F_contig1148:872..975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 873..975 -
1622928831.5898764-CDS-H-canaliculatus_F_contig1148:2078..21701622928831.5898764-CDS-H-canaliculatus_F_contig1148:2078..2170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 2079..2170 -
1696845582.0704064-CDS-H-canaliculatus_F_contig1148:2078..21701696845582.0704064-CDS-H-canaliculatus_F_contig1148:2078..2170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 2079..2170 -
1622928831.603667-CDS-H-canaliculatus_F_contig1148:3580..37361622928831.603667-CDS-H-canaliculatus_F_contig1148:3580..3736Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 3581..3736 -
1696845582.0828276-CDS-H-canaliculatus_F_contig1148:3580..37361696845582.0828276-CDS-H-canaliculatus_F_contig1148:3580..3736Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1148 3581..3736 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928831.6210508-UTR-H-canaliculatus_F_contig1148:3736..38311622928831.6210508-UTR-H-canaliculatus_F_contig1148:3736..3831Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1148 3737..3831 -
1696845582.0959496-UTR-H-canaliculatus_F_contig1148:3736..38311696845582.0959496-UTR-H-canaliculatus_F_contig1148:3736..3831Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1148 3737..3831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1148.1299.1

>prot_H-canaliculatus_F_contig1148.1299.1 ID=prot_H-canaliculatus_F_contig1148.1299.1|Name=mRNA_H-canaliculatus_F_contig1148.1299.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
MATSAGAAAGRPKQGVVAELTLAKSGQSTPLTAISLSSDQRVGVVGGHGI
MKVIRLAPEGLSEVATLKAGRRKGPGSAGSKLSMYDVAWCPTGGHVAASL
SNGGVAIWDLQHLPSST
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mRNA from alignment at H-canaliculatus_F_contig1148:873..3831-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1148.1299.1 ID=mRNA_H-canaliculatus_F_contig1148.1299.1|Name=mRNA_H-canaliculatus_F_contig1148.1299.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2959bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1148:873..3831- (Hapterophycus canaliculatus Oshoro5f female)
CGCTTGGCGCCGGACAGAGAGAGGGAGATCGGTGACATCTCTCGCATGCA
AATCGACTCCTAAGGTGGTCGAAGCGGCCGCCACGCTACTAGATCATGGC
CACTTCAGCTGGTGCCGCTGCAGGTCGTCCAAAGCAAGGCGTGGTCGCCG
AGCTCACCCTCGCGAAGAGCGGGCAGTCTACCCCACTGACCGCGATCTCC
TTGTCGAGCGACCAGCGCGTGGGGGTCGTTGGAGGGCATGGGATCATGAA
GGTGAGCTCGCCCTGTGCCCAAGAGTTGAACTTGCCGTGTGGTCGGAGTT
ATTGGCATTGTGGTTTGTGTCCCACTCTCGACCTACACAGACTCATACGC
ACACCCTGCTGGCCGGCCTGTTGAAGAACACGCCCAACCTGCAAGCGCGC
GAGGTTCAGCTGGCGGCGTAAGTGCACCCAGAGCGTGGGGGTTCACCCGC
ATCAAGGGCATCAACAGCGAGGTATCTGAACAATCTCCTGCGAGCTCTGC
AGGAACACGTATTCGGATGGCAAGCGCGTGGTTCTGTGTATGAACCAATA
TCAGCATGTAGTTGCCTCGTGTCCAGGATAGCTTCAGCAGTGTAAAGTGG
TACAAGTCGAATCGACGCGTCCGCGGCGGTTAGGTAGATACCTGCTACCC
TGGAAGCGAGGACGCCCTGCTCTGTCGTTTTGTTGGCCGTGAAACCTTGT
CAACGAGCTCTGTGAGTCATTCTCAGTCGGTAGCAACAGAAATCAAGCGC
CGAAACCGTTCGTTCTGCTCACAAACTTGAAAGTTGCATTCATGCAAAGA
TCAGATGAGACTGCTTTCCAACAGACGAGTCCGGTGTGCAGACTCGATCT
CTCAACGATCGACACGTGTGCCACTAGGGGTGGAAGAATACGTGGCCCTC
CCGCGGTTTACCTTGATCATGCAGGCTATCGCAACCCCCCTGAACCGACT
TTCAAAGCTCGATTACTCCACAGCAAGAATTTTGTCAACGCCTCAAAGGG
TGGCGTCGGAAAGATCTCGTCGATGGCTGTCAGACAACGAGTCGTTTGGC
ATTGGTACCCTCTTCTTGACGGAGTAATCGACCTTTGAAAGTCGGCCCAG
GGGGGGTCCGATAACCCGCACGATCAAGGTTGATGGATGTGTCTGTTTTT
TCCAAAACAACCGGGGGATCTTCACCCCTGCTCTGTACCCTATAATACTT
GTATAGTATGTAACAGGAACGGCAGATAAGAAGCCAAGAACGTCGGCTGC
CACCTCATTTTTGTCAGCCAGATCACGTTCTGAACCTTACAACACCTTGG
TGGTCCTGTTGCGAGACCTCTCCGTTTTGTATCTCCCTCCCCCTTCTGCA
CCAGGACCTTAATTCCGAAGCCGTCAAATCTGACTGTTACAGCGGTATTT
CACCGCCGACGAGCGGACAGCCCGGCTCACGAGCTGTTCTCGTAATGGCA
GCCAAGCCTGCACGCGACTCGCAGAACGGGGCACCGATTCACTGACTGAC
AACACCCCGATAACCTCAGCCTCGATTTCGTGGAAAATCGATCGATCAAG
TCAACCCACGACGGCCCCTTGAATAAGCTGCTGCCCTCTCCCTTCCCGCA
TTACTTCCCCCCTCGAATGCCCCCTTTCTCCTCTCCCGCTCGCCCCGTCC
TGGCACGTCAGGTGATCCGGTTGGCGCCGGAGGGACTCTCTGAGGTGGCT
ACCCTTAAGGCTGGCCGGCGAAAGGGCCCCGGTAGTGCGGGATCGAAGCT
TAGGTGAGGTGCCAAATGCAGCTTGGTTTAGATGGGGTGGCGGGGACGGA
CGGCGTCGTGAGGAAAACACGGTTTTGCCCATTGCATAGCGGTCCCCCTT
CCCTGCCAAGTTTCGGTTTGGACATGCAGCGCTCGTCCCCGCTCTATGCA
CGCCCTTTTGGAGGAAATCCTGCGCTACACGGACATGTCTGTTTAATGTA
CTTCAGTCCCTGCGCGTGCGTTTTTTAAGAAGACATAACTACGCGAAAGG
AGCGTCCTCTGGGACACAACTTACGGGGGTTGTGTTTAATAATCTTAAGT
AAGAGTTGCTGTTTTCTGTGTGTTTTCCCCGTGGCATCGAGATTTCATTT
GTTCCGGACATGCCTGCATGCGAGAAATAATCCCTCCGTCATCCCCAAAA
GATCCCAGTCCCGATAAGCACGTGACATAATCGCAGCGACACTCTTCCCT
CTTGAAGTTCGAGTTGACGGGAAAAAAAAATATAGGGGAGGGACATAGAG
AAACCATTAACTTGGCTTGAAGGCTCCTCACCTAAATTTCCGATTTTTCT
GATAAGATAACATCTTCAGTGCTTGTGCTATGATAGGAAAGCAACAGATA
TCGCTTGTAGCTGGTAATTTCGGCCGTATATACAGTGCTCTGGGGTAGTA
CTCTTCCTTAGGAGTAAGCTTCACCGAAGCTGAAGATCTTCTGGTGGCAC
TACATTGTTCGTTTTCATCGTGATTTTTGTAGTTCTTGCTTCGCCGTACC
AAAGTCGTAGCCCCTAGTCCTCTGTGGTTCGTGATGTGTTACCCGAACAG
GGTGCCAGTGACAACCATCGCGAGAAAGAAAAAAGAGGAACATTCTTCGA
CTCCAGAAATGGAGCATGCAGTGCGCAGAGACGAAAATGATGTTTGGCGT
TGTGGCGCGATCTTGCGATCTTTGTTGGAGGTGCTGTCGCAATCAGCAGC
TTAAGAAGTGCGCCTTTTCCCCCCTTTTCGCGGCGGCCCCAATGCTCGAC
ACGCTTAGCCTTCTTAGGCTCTGTCTTCTTCGCAAGATCGCTGCTTTCAA
TCACAGGTTGCCCCGTCTCACACCCAAGCGTCTACGACCCCCCGCGTTGA
TCCCAGCATGTACGACGTGGCCTGGTGCCCCACTGGCGGTCACGTAGCGG
CGTCGCTCAGCAATGGCGGCGTGGCCATCTGGGACCTGCAGCACCTGCCG
TCTTCTACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1148:873..3831-

>mRNA_H-canaliculatus_F_contig1148.1299.1 ID=mRNA_H-canaliculatus_F_contig1148.1299.1|Name=mRNA_H-canaliculatus_F_contig1148.1299.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1148:873..3831- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCACTTCAGCTGGTGCCGCTGCAGGTCGTCCAAAGCAAGGCGTGGT
CGCCGAGCTCACCCTCGCGAAGAGCGGGCAGTCTACCCCACTGACCGCGA
TCTCCTTGTCGAGCGACCAGCGCGTGGGGGTCGTTGGAGGGCATGGGATC
ATGAAGATGGCCACTTCAGCTGGTGCCGCTGCAGGTCGTCCAAAGCAAGG
CGTGGTCGCCGAGCTCACCCTCGCGAAGAGCGGGCAGTCTACCCCACTGA
CCGCGATCTCCTTGTCGAGCGACCAGCGCGTGGGGGTCGTTGGAGGGCAT
GGGATCATGAAGGTGATCCGGTTGGCGCCGGAGGGACTCTCTGAGGTGGC
TACCCTTAAGGCTGGCCGGCGAAAGGGCCCCGGTAGTGCGGGATCGAAGC
TTAGGTGATCCGGTTGGCGCCGGAGGGACTCTCTGAGGTGGCTACCCTTA
AGGCTGGCCGGCGAAAGGGCCCCGGTAGTGCGGGATCGAAGCTTAGCATG
TACGACGTGGCCTGGTGCCCCACTGGCGGTCACGTAGCGGCGTCGCTCAG
CAATGGCGGCGTGGCCATCTGGGACCTGCAGCACCTGCCGTCTTCTACAC
ATGTACGACGTGGCCTGGTGCCCCACTGGCGGTCACGTAGCGGCGTCGCT
CAGCAATGGCGGCGTGGCCATCTGGGACCTGCAGCACCTGCCGTCTTCTA
CA
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