mRNA_H-canaliculatus_F_contig1147.1293.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1147.1293.1
Unique NamemRNA_H-canaliculatus_F_contig1147.1293.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1147.1293.1 vs. uniprot
Match: D8LGX3_ECTSI (Rieske (2Fe-2S) domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGX3_ECTSI)

HSP 1 Score: 462 bits (1188), Expect = 7.670e-149
Identity = 259/327 (79.20%), Postives = 281/327 (85.93%), Query Frame = 1 
Query:    1 QAGDFLFRQMMELTLREDKDIIENIYPEYQKGFMNARYDQQMLQYRKAITSFQATAAERADTQLESSLQMELLNRISRSQRGLASTRDDRSAILDLIQRLEDVQARPTNQPPAAVADGSGGDPRLTAAAEAAAEANARXXXXXXXXXXXXALIAAEQESVEGEWHLEYVSNE--EEGVQEGWDLAASTDPQKEKRIAALKEAGGESLLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLKDQGNRLLVGFHKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSS 975
            +AGDFLF QMM+LTL+EDK+IIENIYPEYQ+GFMNARYDQQMLQYRKAIT+FQATAAERA+TQLE+SLQMELLNRISRS+RGLASTR DRSAILDLI+RLEDVQA  T QP                           XXXXXXXXX   AL    +ESVEGEWHLE+VSN+  EEG QEGWDLA+STDP+K++R+A LKEAG E+LLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLKD+ +RL+VGF KAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSS
Sbjct:  303 KAGDFLFGQMMDLTLKEDKEIIENIYPEYQRGFMNARYDQQMLQYRKAITNFQATAAERANTQLETSLQMELLNRISRSERGLASTRGDRSAILDLIRRLEDVQA--TTQPXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXDENAL----RESVEGEWHLEFVSNDGGEEGAQEGWDLASSTDPEKKERLAVLKEAGSEALLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLKDEASRLMVGFRKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSS 620
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1147.1293.1 vs. uniprot
Match: A0A6H5KLG4_9PHAE (Rieske domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG4_9PHAE)

HSP 1 Score: 461 bits (1187), Expect = 9.630e-146
Identity = 258/327 (78.90%), Postives = 282/327 (86.24%), Query Frame = 1 
Query:    1 QAGDFLFRQMMELTLREDKDIIENIYPEYQKGFMNARYDQQMLQYRKAITSFQATAAERADTQLESSLQMELLNRISRSQRGLASTRDDRSAILDLIQRLEDVQARPTNQPPAAVADGSGGDPRLTAAAEAAAEANARXXXXXXXXXXXXALIAAEQESVEGEWHLEYVSNE--EEGVQEGWDLAASTDPQKEKRIAALKEAGGESLLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLKDQGNRLLVGFHKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSS 975
            +AGD LF QMM+LTL+EDK+IIENIYPEYQ+GFMNARYDQQMLQYRKAIT+FQATAAERA+ QLE+SLQMELLNRISRS+RGLASTR DRSAILDLI+RLEDVQA  T QP                            XXXXXXXXXXXA   A +ESVEGEWHLE+VSN+  EEGVQEGWDLA+STDP+K++R+A LKEAGGE+LLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSG TTTVQLDAV+EPLKD+ NRL+VGF KAIV++GGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSS
Sbjct:  544 KAGDLLFGQMMDLTLKEDKEIIENIYPEYQRGFMNARYDQQMLQYRKAITNFQATAAERANAQLETSLQMELLNRISRSERGLASTRSDRSAILDLIRRLEDVQA--TTQPXXXXXXXXXXXXXXX-------------XXXXXXXXXXXADENALRESVEGEWHLEFVSNDGGEEGVQEGWDLASSTDPEKKERLAVLKEAGGEALLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGLTTTVQLDAVVEPLKDEANRLIVGFRKAIVSIGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSS 855
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BLAST of mRNA_H-canaliculatus_F_contig1147.1293.1 vs. uniprot
Match: A0A836CFS0_9STRA (Rieske domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFS0_9STRA)

HSP 1 Score: 271 bits (692), Expect = 2.600e-75
Identity = 169/330 (51.21%), Postives = 219/330 (66.36%), Query Frame = 1 
Query:    4 AGDFLFRQMMELTLREDKDIIENIYPEYQKGFMNARYDQQMLQYRKAITSFQATAAERADTQLESSLQMELLNRISRSQRGLASTRDDRSAILDLIQRLEDVQARPTNQPPAAVADGSGGDPRLTAAAEAAAEANARXXXXXXXXXXXXAL--------IAAEQESVEGEWHLEYVSNEEEGVQEGWDLAASTDPQKEKRIA----------ALKEAGGESLLFDWKETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLKDQGNRLLVGFHKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKG 939
            A D LFRQMM +TL+EDKDIIE IYP YQ+G+MNA++D+Q+L +RKA   FQ  +A R+ TQLES+LQMELL RI+ ++RG A +  DR AIL LI++LE V       PPAA                        XXXXXXXXXXXX          +AAE  SV GEWHL+Y++ E +G   G D  A++DP+    +A           L++AGGE+ L DW + GRPLWADT ESVQIIDT ++ ++NRA Y+GWSG  TTVQLDA+ +  ++  NRLL+ F +A V++GG+K++FPHL RFSP GW+ETTY+N  +RIARGNKG
Sbjct:  438 AADLLFRQMMRVTLQEDKDIIEAIYPGYQRGYMNAKFDKQVLFWRKAYDRFQEVSAARSSTQLESALQMELLARIAGTRRGNAQSTSDRRAILRLIEQLETVS------PPAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAAE--SVGGEWHLQYMA-EPKG---GGDAGANSDPEVSAEVADAVLSAVDGQVLQQAGGEAYLLDWNQNGRPLWADTEESVQIIDTDSQIISNRASYRGWSGLRTTVQLDAIFKACEENANRLLIEFRRAAVDIGGLKLSFPHLSRFSPRGWLETTYVNDHLRIARGNKG 755
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1147.1293.1 vs. uniprot
Match: A0A4D9DEC4_9STRA (Rieske domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEC4_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.310e-36
Identity = 127/402 (31.59%), Postives = 181/402 (45.02%), Query Frame = 1 
Query:   10 DFLFRQMMELTLREDKDIIENIYPEYQKGFMNARYDQQMLQYRKAITSFQATAAERADTQLESSLQMELLNRISRSQRGLASTRDDRSAILDLIQRLEDVQARPTNQPPAAVADGSGGD---------------------------------------------PRLTAAAEAAA------------------EANARXXXXXXXXXXXXALIAAEQESVEGEWHLEYVSNEEEGVQEGWDLAASTDPQKEKRIAALKEAGGESLLFDWKET-GRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPL-----------------KDQGNRLLVGFHKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVS 972
            D  F+ +M LTL EDK+I+E++Y E+Q G++ +RYD+ +  YRKA+  F   +  R       +L+MELL  I  ++RG  +TR   S IL ++Q LE   AR          +G  G+                                             P L A A AA                   EA  R            +L AAE  S                 +E  D+   ++ +  +    L+ AGGE  L D+  + GRPLW DT ES Q IDT    L+N AVY+G  G TT V+L+ +I                    +++G+R  V F  A V+VGG KVTFPH+  F   GW++TT++++ IRI RGN+GSIFVLTR+P++
Sbjct:  549 DHFFQSVMRLTLNEDKEILESLYQEHQAGYVLSRYDKPLKIYRKALKEFMEASKSREFLAERRALEMELLRLIECTERGRKATRGQHSMILSIVQGLERGFARQFKDE-----EGGNGEVVIEDSAVNGTWHLVYANPGDLASLPPDDEQKEGEQQSLRMQDLRPALDATATAAGGPYPWRTMTPRQQQRVTREARERMQQPEEKGGSAHSLPAAEPAS----------KPLPRSPRETDDVLLYSEEKSARLQERLRSAGGERYLLDFTPSKGRPLWVDTDESTQTIDTSKNLLSNTAVYQGLLGITTKVELNGIISTPAGGQKSKGDALGVEDGGRNKGHRQDVQFTSAKVDVGGFKVTFPHMDVFGVNGWLDTTFVDEHIRICRGNRGSIFVLTRRPLT 935
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BLAST of mRNA_H-canaliculatus_F_contig1147.1293.1 vs. uniprot
Match: A0A090M919_OSTTA (Plastid lipid-associated protein/fibrillin conserved domain n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M919_OSTTA)

HSP 1 Score: 63.9 bits (154), Expect = 2.300e-7
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:  673 QIIDTKARTLTNRAVYKGWSGFTT-TVQLDAVIEPLKDQGNRLLVGFHKAIVNVGGMKVTFP-HLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQ 963
            Q +D  A+T  NRA +  + G T  TV L    E    + NRL V F +  + +G     F   L  F P GW++TTY++  +R+ RG+KGS+FV  R+
Sbjct:  167 QDLDIDAKTAENRAEFDAFGGATKLTVSLRGECEVDPARANRLNVRFREVEIALGSSARGFKASLDAFEPRGWLDTTYIDDDLRVGRGDKGSVFVAARR 265
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1147.1293.1 vs. uniprot
Match: A0A7S4CA86_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CA86_9EUGL)

HSP 1 Score: 58.5 bits (140), Expect = 8.550e-7
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:  673 QIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLKD--QGNRLLVGFHKAIVNVGGM-KVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSS 975
            Q  D   + + N   +K       TV+++   +P  D  +G R+ V F +   NV G+ K+  P L    P GW+ETT  ++ +RI+RG+KGS+FVL+R  +++
Sbjct:    1 QTFDMARQKVVNTVKFKAPLNLQGTVRVEVGWKPCTDPSKGRRVDVKFERCEFNVAGLPKLDIP-LGPIGPPGWLETTVCDEELRISRGHKGSVFVLSRPKIAA 103
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1147.1293.1 vs. uniprot
Match: D8SFE8_SELML (PAP_fibrillin domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SFE8_SELML)

HSP 1 Score: 59.3 bits (142), Expect = 1.650e-6
Identity = 37/104 (35.58%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:  661 SESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAV----IEPLKDQGNRLLVGFHKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTR 960
            + S+QIID+   ++ N A +  + G   ++ ++A     +EP   QG RLLV F   ++ +  ++V    L    P GW++TTYL+  +R+ RG+KGSIFV  R
Sbjct:   56 TRSLQIIDSINGSVKNIADFS-FLGINGSLCINAAAVKSLEP-DTQGVRLLVTFESFVLTINRIRVATISLAFIKPKGWVDTTYLDDDMRVGRGDKGSIFVAVR 157
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1147.1293.1 vs. uniprot
Match: I0YZS7_COCSC (PAP_fibrillin domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZS7_COCSC)

HSP 1 Score: 58.9 bits (141), Expect = 2.060e-6
Identity = 46/150 (30.67%), Postives = 71/150 (47.33%), Query Frame = 1 
Query:  577 RIAALKEAGGESLLFDWKETG----------RPLWADTSES---VQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPLK--------DQGNRLLVGFHKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTRQ 963
            R+A+L+  G        K TG          RPL A+   S    QIID +A  L N A ++  +     + ++  +EP +        ++  R+ V F    + +G +      L   +PTGW++TTYL+   RI RG+KGS+FV  RQ
Sbjct:    3 RLASLQSPGTADDTNWEKRTGGVEGPVLAALRPLSANAVSSKGITQIIDREAGRLENIAEFRIANAADGYLNVEGTVEPAQPSSSKRGAEEAVRVNVKFTAFSLKIGFLPALKIPLGFANPTGWVDTTYLDDDFRIGRGDKGSVFVTARQ 152
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1147.1293.1 vs. uniprot
Match: D8R5J9_SELML (PAP_fibrillin domain-containing protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R5J9_SELML)

HSP 1 Score: 58.2 bits (139), Expect = 4.130e-6
Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:  661 SESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAV----IEPLKDQGNRLLVGFHKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTR 960
            + S+QIID+   ++ N A +  + G   ++ ++A     +EP   QG RLLV F   ++ +  ++V    L    P GW++TTYL+  +R+ RG+KGSIF+  R
Sbjct:   56 TRSLQIIDSINGSVKNIADFS-FLGINGSLCINAAAVKSLEP-DTQGVRLLVTFESFVLTINRIRVATISLAFIKPKGWVDTTYLDDDMRVGRGDKGSIFLAVR 157
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1147.1293.1 vs. uniprot
Match: UPI000D1C81BD (plastid lipid-associated protein 3, chloroplastic isoform X2 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C81BD)

HSP 1 Score: 59.3 bits (142), Expect = 4.680e-6
Identity = 37/104 (35.58%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:  661 SESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAV----IEPLKDQGNRLLVGFHKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIARGNKGSIFVLTR 960
            + S+QIID+   ++ N A +  + G   ++ ++A     +EP   QG RLLV F   ++ +  ++V    L    P GW++TTYL+  +R+ RG+KGSIFV  R
Sbjct:  116 TRSLQIIDSINGSVKNIADFS-FLGINGSLCINAAAVKSLEP-DTQGVRLLVTFESFVLTINRIRVATISLAFIKPKGWVDTTYLDDDMRVGRGDKGSIFVAVR 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1147.1293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LGX3_ECTSI7.670e-14979.20Rieske (2Fe-2S) domain protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KLG4_9PHAE9.630e-14678.90Rieske domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836CFS0_9STRA2.600e-7551.21Rieske domain-containing protein n=1 Tax=Tribonema... [more]
A0A4D9DEC4_9STRA1.310e-3631.59Rieske domain-containing protein n=3 Tax=Monodopsi... [more]
A0A090M919_OSTTA2.300e-737.37Plastid lipid-associated protein/fibrillin conserv... [more]
A0A7S4CA86_9EUGL8.550e-733.65Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
D8SFE8_SELML1.650e-635.58PAP_fibrillin domain-containing protein n=2 Tax=Se... [more]
I0YZS7_COCSC2.060e-630.67PAP_fibrillin domain-containing protein n=1 Tax=Co... [more]
D8R5J9_SELML4.130e-634.62PAP_fibrillin domain-containing protein n=1 Tax=Se... [more]
UPI000D1C81BD4.680e-635.58plastid lipid-associated protein 3, chloroplastic ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1147contigH-canaliculatus_F_contig1147:482..5003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.9
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog70448.A0A090M919
EggNOG free text desc.PAP_fibrillin
EggNOG OGs2E3RW@1,2S918@2759,37X18@33090
COG Functional cat.S
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size2603
Cds size1077
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1147.1293.1prot_H-canaliculatus_F_contig1147.1293.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1147 509..3493 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.2663867-UTR-H-canaliculatus_F_contig1147:481..5081622928830.2663867-UTR-H-canaliculatus_F_contig1147:481..508Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1147 482..508 +
1696845581.5035868-UTR-H-canaliculatus_F_contig1147:481..5081696845581.5035868-UTR-H-canaliculatus_F_contig1147:481..508Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1147 482..508 +
1622928830.3725123-UTR-H-canaliculatus_F_contig1147:3493..45641622928830.3725123-UTR-H-canaliculatus_F_contig1147:3493..4564Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1147 3494..4564 +
1696845581.5666337-UTR-H-canaliculatus_F_contig1147:3493..45641696845581.5666337-UTR-H-canaliculatus_F_contig1147:3493..4564Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1147 3494..4564 +
1622928830.3864903-UTR-H-canaliculatus_F_contig1147:4575..50031622928830.3864903-UTR-H-canaliculatus_F_contig1147:4575..5003Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1147 4576..5003 +
1696845581.5802217-UTR-H-canaliculatus_F_contig1147:4575..50031696845581.5802217-UTR-H-canaliculatus_F_contig1147:4575..5003Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1147 4576..5003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.287358-CDS-H-canaliculatus_F_contig1147:508..6041622928830.287358-CDS-H-canaliculatus_F_contig1147:508..604Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1147 509..604 +
1696845581.5142639-CDS-H-canaliculatus_F_contig1147:508..6041696845581.5142639-CDS-H-canaliculatus_F_contig1147:508..604Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1147 509..604 +
1622928830.3002737-CDS-H-canaliculatus_F_contig1147:912..13681622928830.3002737-CDS-H-canaliculatus_F_contig1147:912..1368Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1147 913..1368 +
1696845581.523528-CDS-H-canaliculatus_F_contig1147:912..13681696845581.523528-CDS-H-canaliculatus_F_contig1147:912..1368Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1147 913..1368 +
1622928830.320418-CDS-H-canaliculatus_F_contig1147:1796..19121622928830.320418-CDS-H-canaliculatus_F_contig1147:1796..1912Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1147 1797..1912 +
1696845581.53337-CDS-H-canaliculatus_F_contig1147:1796..19121696845581.53337-CDS-H-canaliculatus_F_contig1147:1796..1912Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1147 1797..1912 +
1622928830.340469-CDS-H-canaliculatus_F_contig1147:2171..23481622928830.340469-CDS-H-canaliculatus_F_contig1147:2171..2348Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1147 2172..2348 +
1696845581.5442116-CDS-H-canaliculatus_F_contig1147:2171..23481696845581.5442116-CDS-H-canaliculatus_F_contig1147:2171..2348Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1147 2172..2348 +
1622928830.3590508-CDS-H-canaliculatus_F_contig1147:3261..34931622928830.3590508-CDS-H-canaliculatus_F_contig1147:3261..3493Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1147 3262..3493 +
1696845581.5544503-CDS-H-canaliculatus_F_contig1147:3261..34931696845581.5544503-CDS-H-canaliculatus_F_contig1147:3261..3493Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1147 3262..3493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1147.1293.1

>prot_H-canaliculatus_F_contig1147.1293.1 ID=prot_H-canaliculatus_F_contig1147.1293.1|Name=mRNA_H-canaliculatus_F_contig1147.1293.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=359bp
MMELTLREDKDIIENIYPEYQKGFMNARYDQQMLQYRKAITSFQATAAER
ADTQLESSLQMELLNRISRSQRGLASTRDDRSAILDLIQRLEDVQARPTN
QPPAAVADGSGGDPRLTAAAEAAAEANARAATAAEAVAAEEALIAAEQES
VEGEWHLEYVSNEEEGVQEGWDLAASTDPQKEKRIAALKEAGGESLLFDW
KETGRPLWADTSESVQIIDTKARTLTNRAVYKGWSGFTTTVQLDAVIEPL
KDQGNRLLVGFHKAIVNVGGMKVTFPHLQRFSPTGWMETTYLNQGIRIAR
GNKGSIFVLTRQPVSSPPPAGLSSSSSSSSSPSSSMAKHGKELFDRVRGV
PAKTGLFQ*
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mRNA from alignment at H-canaliculatus_F_contig1147:482..5003+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1147.1293.1 ID=mRNA_H-canaliculatus_F_contig1147.1293.1|Name=mRNA_H-canaliculatus_F_contig1147.1293.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4522bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1147:482..5003+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCGGGCGACTTTTTGTTCCGGCAGATGATGGAGCTCACGCTGAGGGA
GGACAAGGACATCATCGAGAACATCTACCCTGAGTACCAAAAAGGGTTCA
TGAACGCGCGCTACGACCAGCAGGTGAGATCAATATTGGCCACGAACACG
CGCGTTCAGATTGGGTGGTCGGTCGAGCGACGGCTGCTGCCGGGTTGCGA
GGGGGGTGGGATCGATGGCGGCGACAGGAAAGGTCGGGTTACTCGTCGGA
GGGACAGGTGATACTGCTTGGAAGACAGGAGACTAGCTTGCCAGCGATTT
GTCCGTGTCTCGCCCATGTGCACGCGTGTGATCTGAACGGCAAACAATTC
CGATAGCGGTCGGCTATTTGCTTGTCACCCACCTCGCTTTTCCCCTCCGG
CACGAACTGCTCGCCCGAAAACCAACACCAGATGCTCCAGTACCGCAAGG
CCATCACCAGCTTCCAGGCAACCGCCGCAGAGCGCGCCGACACCCAGCTC
GAGAGCTCCCTCCAGATGGAGCTGCTTAACCGCATCTCCCGCAGCCAGCG
CGGCCTAGCTTCCACCCGGGACGACCGCTCCGCCATCCTCGACCTCATCC
AGCGCCTCGAGGACGTCCAGGCGAGGCCGACCAATCAGCCACCGGCAGCG
GTGGCTGACGGCAGTGGCGGCGATCCGCGACTGACCGCGGCGGCAGAGGC
GGCGGCAGAGGCGAACGCTCGAGCGGCGACGGCGGCGGAGGCGGTGGCGG
CTGAGGAGGCCCTGATCGCGGCCGAGCAGGAGAGCGTGGAAGGGGAGTGG
CACCTGGAGTACGTGTCCAACGAGGAGGAGGGAGTGCAGGAGGGATGGGA
CCTGGCGGCGTCGACCGACCCTCAGAAGGAGAAACGGGTGAGTCGGCGGC
GAGCGCCGGTGTCATCACTCGGCTTCATTTTCCGAGTTCTGCCCGGGCGT
TCTCTATGTCTGGCCGTCTCGTCGTCACTTCCGTCCCGTCCCGGTTCGTC
TTCTCTTGGTTTATCCGATTATGGTCGTTGAAATGACGCGATCGCCCGTC
GTCTGCTAGAGAAGATGGTCGGACTGGCCAAACGCATACACACACATACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACAAGGAATCTGTTTACTGACGTATTTGCTTGAATTCGTCCGTATTT
TTTGACACCATACCGGTTTGCCAATGGGCTCCTGTAAAAAGTCCGTTCAT
TCTGACCGCACCCGTTTGCCTATGGACTTGATTACATATATACCTGGTAT
GCGTGTTGGTTCCAGATCGCCGCGTTGAAGGAGGCCGGAGGAGAGTCTCT
CCTTTTCGACTGGAAGGAGACGGGGCGTCCTCTGTGGGCCGACACATCCG
AGAGCGTCCAGATCATCGACACCAAGGCCCGGTGCGTGCTGGGCGGAGAT
TTCGTCACAATGAGCTGCTGCTTCGACACCAGGAATGCTTTCGATGTGGC
TCGTCTCCCTCGTAGCAGGCACACAAGGACTCAGAAAAAAAAACGAGCCG
AAGTGCCTGGCATGGCTCTGGAGGTTTGGTCGACTCATTTGTCCTGTAGG
CCCGTTGAACGTAATTCATCATCTTCTGGTTGTTCACACTATGTTTTTTT
TCGCGGGTATTCCCCTTTGGTCTGCGTTGTCCCTTCGCAGGACTTTGACG
AACCGCGCCGTGTACAAGGGCTGGAGCGGTTTCACTACTACAGTGCAGCT
CGACGCAGTGATCGAACCCCTCAAAGACCAGGGGAACCGCTTGTTGGTGG
GTTTCCACAAAGCCATCGTCAACGTCGGCGGCATGAAGGTCACGTTCCCG
CACCTGCAGCGCTTCAGGTCAGTGCCCGCCGTGCCCGTCTCCCTGAGACC
AGACTTCACGACAGATGGAACACCTGTCCCTTTGCTGACCCTCAATATCG
TGGGAGCGCGTAGGTCCGTTTTGAGCCCGCGCGGCACACCGTTTTTTTCT
CTTCATCTCTGAACGTTTTCCCTGGCTCCGACCGGAGAGCACGCCCCGTC
CATCTCCTCGTGCTTTTGCCTTATTTTGGCGAGGCTGACCGGCTGTCACG
AAAAACATAGCAACACCGTTGGAACACCCCTTGAGCTACGTCGAACACCT
CCTGAGCTACGTCGTGAGAGGCGTAGCTCGAGGCCTCTATTGAGCTCCAA
ACAGTGAGGGTTCGTTGATGTGTAAAGTTGGGACAAAAGCATGAACAGAA
GAGAGGTTTACAACTTACCTCAATTTCGTGTAATAACATGAGCAATATAA
ACATCAAGTATCTAGTGGTTACATGAAATAGGCCATGCGTTCATCTAGAC
TCTCGAGAAATACTTCCTGTGGTGAGACGTCAAGACGTCAAGCAAGTGAA
AGAGTCCACCTTGTTTTGGTTTTCGACTGTCACTGCGCTTATTTTTATCT
CAGCGTCTGCGAGCATCTCGTAGACGAGTTGCTTTCTCTGATACATCTAA
GGTTAGCCATTTCGGCAAGGGTGCTATCTACGGTTTCAGTATCTGGGGAG
CGTCCGAAGCGACGAGCGATACCTCAAAGGCGTCGGCCCTGTGGTGCCTT
GCAACGCCCGTCCCCCCCGGTTCTCTTCGCAGGAAAGCCGCCGGGATGAT
TTCGGGCGCGCCAAATTGACGTCTGATGCCTCGCTCCCTTTTTTAACCGC
TTCCGTGTTTCGTTCCCCTCGACTCCTCCTCCTCCCCCTGCTGCTGCTGC
TGCTGCTGCTGCTCATGCTGCGCACGACAGCCCGACGGGATGGATGGAAA
CGACGTACCTGAACCAGGGCATCCGCATCGCGAGAGGCAACAAGGGCTCT
ATTTTCGTCCTCACGCGCCAACCTGTTTCGTCTCCCCCACCGGCGGGGCT
TTCGTCCTCCTCCTCCTCCTCTTCTTCTCCTTCTTCTTCCATGGCGAAGC
ACGGGAAGGAACTGTTCGACCGCGTTCGCGGGGTCCCCGCCAAGACGGGG
TTGTTTCAATGAAACGCATCTCGACGCAGCAATAACACTTGGCGACAACA
GCGGGGAGAGGAGACGGAGGCCGATCGCAGGAAGATGTTTCTTTAGAGGC
GAAGAGATGGAAAACGAAGCGCCTGCTAATACAAGACTATTTTTGTTCGT
TTGTTTGCGTAGGGGTCACGACAAGCCAGGGCGCAACCGGCAGGCACACC
ATGCCAGTCAAGAGGCTTCGTACTGTAAATACGCAGGGGTGAGGGTGGCG
GGGGGGGAGTTGTGTGTAAATAAAACAAATCGATGGGTATAAGTGTTAAT
CGAAGGGCAGATGTAAATGGGGAGGGTTGAAGGGTGTCCGGACTCAAGTC
TTATGCCGCGCTGGTCACCACGTGTACGAAAAAAAACAAGGCTACCGCGC
CTTTCCCGGCCGGCGAAGTATTAAATGGTTGTCAACAAGCTTGAGGTGTT
CAAGCGAGAGGGTACAAGTAGGTGGTTGGTGGTGGCACATATTGGTGGTG
ATGTGCGAAGCAGGGTCGAAGGTGGCAAGGCGCGCGTTCACTCTCACGGA
GCCAGCCCTTGCTTCTCGGAGCTCAAAAGTCGGCACGGGAATATTCCGCA
CCAAACTTTCTGCCGGCGTCTTGAGTGGTTTCCCGTGCACTATTTCCGTC
TCCGCGTGCGTTCGAGTGCGCGGGCTTCTCCGCGCCCTTATCTATCCGTT
CTCCCGTTTGGAAATGTGTCCGGTGTTTGTCAATGCTGCCGTGCCTACGT
ATATCTATGATGAGCGTATGGACGGGCGGTGTGGTGTGTACTTTTTGTGG
AGGCCCATCTCTCGACTACTATCCATTATCGGCGGTTGTCTACCCTAGGA
CTTTCGAACGGCAGCACGGCGGTCAGTGTGCCGCAGTAGCGCTGTGGGTG
GTGTTGGCTTGGCATCTGTACGCATATATGTGCAAGTAGGCGGGAGGAAT
AGCGTCGGGTGACCAAGCGTGCATGCGCGCAGAGAGAGAGAGAGGAACGG
CTGGACCATCTCGGCCGCAAAAAACACGTTTTCAACGTTCCCCGACCTAG
GGTATGTAGTCCGATCTCATGGAACTTTTTGCCGTGGGAGGGAGCGTGTG
TGTGTGTGTGTGTGTGTGCGTGCGTGTGCGTGTGCGTGTGAACACGTGCG
ATAAGCAGTGTACATAAGGTCGGGAGAGGGAGCGGCGACGGGCCGCCATG
AGATACGTCTCGTGTTCACACCCTTCCTATTCCTTGCGCTGTATACGTGG
TTCGTATGGCACAGGAAGTAAAGGGCGGGGCCGAACGGCGCCGCAAACGC
CTGCCTACTGCTGTTTTCACGCCAATCGCGGTCGGGTGGGTAGGCCGACT
TGGCCCTTGTTTCCCCCGGTGTTGTTGTCGGGTGCGGGACTGAATGACGG
AGGGATGGACCCCTTCAAAGGGAGAAGGCGATGGCAGGAGCAAATCCTAT
GCATCCTCTCACGCGGCGCATACTTGAGCTTCAGCTGTGCCCGTTTGTGT
ATATTTTCGTTTGTTTGTGGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1147:482..5003+

>mRNA_H-canaliculatus_F_contig1147.1293.1 ID=mRNA_H-canaliculatus_F_contig1147.1293.1|Name=mRNA_H-canaliculatus_F_contig1147.1293.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2154bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1147:482..5003+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGGAGCTCACGCTGAGGGAGGACAAGGACATCATCGAGAACATCTA
CCCTGAGTACCAAAAAGGGTTCATGAACGCGCGCTACGACCAGCAGATGA
TGGAGCTCACGCTGAGGGAGGACAAGGACATCATCGAGAACATCTACCCT
GAGTACCAAAAAGGGTTCATGAACGCGCGCTACGACCAGCAGATGCTCCA
GTACCGCAAGGCCATCACCAGCTTCCAGGCAACCGCCGCAGAGCGCGCCG
ACACCCAGCTCGAGAGCTCCCTCCAGATGGAGCTGCTTAACCGCATCTCC
CGCAGCCAGCGCGGCCTAGCTTCCACCCGGGACGACCGCTCCGCCATCCT
CGACCTCATCCAGCGCCTCGAGGACGTCCAGGCGAGGCCGACCAATCAGC
CACCGGCAGCGGTGGCTGACGGCAGTGGCGGCGATCCGCGACTGACCGCG
GCGGCAGAGGCGGCGGCAGAGGCGAACGCTCGAGCGGCGACGGCGGCGGA
GGCGGTGGCGGCTGAGGAGGCCCTGATCGCGGCCGAGCAGGAGAGCGTGG
AAGGGGAGTGGCACCTGGAGTACGTGTCCAACGAGGAGGAGGGAGTGCAG
GAGGGATGGGACCTGGCGGCGTCGACCGACCCTCAGAAGGAGAAACGGAT
GCTCCAGTACCGCAAGGCCATCACCAGCTTCCAGGCAACCGCCGCAGAGC
GCGCCGACACCCAGCTCGAGAGCTCCCTCCAGATGGAGCTGCTTAACCGC
ATCTCCCGCAGCCAGCGCGGCCTAGCTTCCACCCGGGACGACCGCTCCGC
CATCCTCGACCTCATCCAGCGCCTCGAGGACGTCCAGGCGAGGCCGACCA
ATCAGCCACCGGCAGCGGTGGCTGACGGCAGTGGCGGCGATCCGCGACTG
ACCGCGGCGGCAGAGGCGGCGGCAGAGGCGAACGCTCGAGCGGCGACGGC
GGCGGAGGCGGTGGCGGCTGAGGAGGCCCTGATCGCGGCCGAGCAGGAGA
GCGTGGAAGGGGAGTGGCACCTGGAGTACGTGTCCAACGAGGAGGAGGGA
GTGCAGGAGGGATGGGACCTGGCGGCGTCGACCGACCCTCAGAAGGAGAA
ACGGATCGCCGCGTTGAAGGAGGCCGGAGGAGAGTCTCTCCTTTTCGACT
GGAAGGAGACGGGGCGTCCTCTGTGGGCCGACACATCCGAGAGCGTCCAG
ATCATCGACACCAAGGCCCGATCGCCGCGTTGAAGGAGGCCGGAGGAGAG
TCTCTCCTTTTCGACTGGAAGGAGACGGGGCGTCCTCTGTGGGCCGACAC
ATCCGAGAGCGTCCAGATCATCGACACCAAGGCCCGGACTTTGACGAACC
GCGCCGTGTACAAGGGCTGGAGCGGTTTCACTACTACAGTGCAGCTCGAC
GCAGTGATCGAACCCCTCAAAGACCAGGGGAACCGCTTGTTGGTGGGTTT
CCACAAAGCCATCGTCAACGTCGGCGGCATGAAGGTCACGTTCCCGCACC
TGCAGCGCTTCAGGACTTTGACGAACCGCGCCGTGTACAAGGGCTGGAGC
GGTTTCACTACTACAGTGCAGCTCGACGCAGTGATCGAACCCCTCAAAGA
CCAGGGGAACCGCTTGTTGGTGGGTTTCCACAAAGCCATCGTCAACGTCG
GCGGCATGAAGGTCACGTTCCCGCACCTGCAGCGCTTCAGCCCGACGGGA
TGGATGGAAACGACGTACCTGAACCAGGGCATCCGCATCGCGAGAGGCAA
CAAGGGCTCTATTTTCGTCCTCACGCGCCAACCTGTTTCGTCTCCCCCAC
CGGCGGGGCTTTCGTCCTCCTCCTCCTCCTCTTCTTCTCCTTCTTCTTCC
ATGGCGAAGCACGGGAAGGAACTGTTCGACCGCGTTCGCGGGGTCCCCGC
CAAGACGGGGTTGTTTCAATGACCCGACGGGATGGATGGAAACGACGTAC
CTGAACCAGGGCATCCGCATCGCGAGAGGCAACAAGGGCTCTATTTTCGT
CCTCACGCGCCAACCTGTTTCGTCTCCCCCACCGGCGGGGCTTTCGTCCT
CCTCCTCCTCCTCTTCTTCTCCTTCTTCTTCCATGGCGAAGCACGGGAAG
GAACTGTTCGACCGCGTTCGCGGGGTCCCCGCCAAGACGGGGTTGTTTCA
ATGA
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