mRNA_H-canaliculatus_F_contig11468.1290.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11468.1290.1
Unique NamemRNA_H-canaliculatus_F_contig11468.1290.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11468.1290.1 vs. uniprot
Match: A0A6H5JAK3_9PHAE (Aldo_ket_red domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAK3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.230e-7
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = -1 
Query:  257 LENGLLSTAKSLGVTSIAYSPLGLGLLTGK 346
            L+NGLL TAKSLGVTSIAYSPLGLGLLTGK
Sbjct:  264 LDNGLLETAKSLGVTSIAYSPLGLGLLTGK 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11468.1290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAK3_9PHAE2.230e-793.33Aldo_ket_red domain-containing protein n=2 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11468contigH-canaliculatus_F_contig11468:389..734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size346
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.0893707-CDS-H-canaliculatus_F_contig11468:388..6941622928830.0893707-CDS-H-canaliculatus_F_contig11468:388..694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11468 389..694 +
1696845581.4634488-CDS-H-canaliculatus_F_contig11468:388..6941696845581.4634488-CDS-H-canaliculatus_F_contig11468:388..694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11468 389..694 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.1084507-UTR-H-canaliculatus_F_contig11468:694..7341622928830.1084507-UTR-H-canaliculatus_F_contig11468:694..734Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11468 695..734 +
1696845581.4759927-UTR-H-canaliculatus_F_contig11468:694..7341696845581.4759927-UTR-H-canaliculatus_F_contig11468:694..734Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11468 695..734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11468.1290.1prot_H-canaliculatus_F_contig11468.1290.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11468 389..694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11468.1290.1

>prot_H-canaliculatus_F_contig11468.1290.1 ID=prot_H-canaliculatus_F_contig11468.1290.1|Name=mRNA_H-canaliculatus_F_contig11468.1290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp
MERLWDFDGDARARLGFRLAYILHPAEWRRPSVCGRDPSGHARVGRNEVT
KWLCVLSCCFLNRHVHKHDRLDSDRNCQISARSSVTYPSGVRAPEENKRY
L*
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mRNA from alignment at H-canaliculatus_F_contig11468:389..734+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11468.1290.1 ID=mRNA_H-canaliculatus_F_contig11468.1290.1|Name=mRNA_H-canaliculatus_F_contig11468.1290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=346bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11468:389..734+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGAGACTCTGGGACTTCGATGGTGATGCGCGGGCACGGCTCGGCTT
TCGTCTGGCATATATACTCCACCCGGCTGAGTGGAGAAGACCATCCGTAT
GCGGTCGAGATCCATCAGGCCATGCCCGTGTTGGACGGAATGAAGTAACG
AAATGGCTGTGTGTCTTGTCCTGCTGTTTTTTAAATCGCCACGTACACAA
GCACGACAGACTCGACAGCGACCGCAACTGCCAGATTAGCGCGAGATCCT
CCGTCACTTACCCGTCAGGAGTCCGAGCCCCAGAGGAGAATAAGCGATAC
TTGTAACTCCGAGCGACTTGGCGGTGCTAAGGAGGCCGTTTTCGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11468:389..734+

>mRNA_H-canaliculatus_F_contig11468.1290.1 ID=mRNA_H-canaliculatus_F_contig11468.1290.1|Name=mRNA_H-canaliculatus_F_contig11468.1290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11468:389..734+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGAGACTCTGGGACTTCGATGGTGATGCGCGGGCACGGCTCGGCTT
TCGTCTGGCATATATACTCCACCCGGCTGAGTGGAGAAGACCATCCGTAT
GCGGTCGAGATCCATCAGGCCATGCCCGTGTTGGACGGAATGAAGTAACG
AAATGGCTGTGTGTCTTGTCCTGCTGTTTTTTAAATCGCCACGTACACAA
GCACGACAGACTCGACAGCGACCGCAACTGCCAGATTAGCGCGAGATCCT
CCGTCACTTACCCGTCAGGAGTCCGAGCCCCAGAGGAGAATAAGCGATAC
TTGTAAATGGAGAGACTCTGGGACTTCGATGGTGATGCGCGGGCACGGCT
CGGCTTTCGTCTGGCATATATACTCCACCCGGCTGAGTGGAGAAGACCAT
CCGTATGCGGTCGAGATCCATCAGGCCATGCCCGTGTTGGACGGAATGAA
GTAACGAAATGGCTGTGTGTCTTGTCCTGCTGTTTTTTAAATCGCCACGT
ACACAAGCACGACAGACTCGACAGCGACCGCAACTGCCAGATTAGCGCGA
GATCCTCCGTCACTTACCCGTCAGGAGTCCGAGCCCCAGAGGAGAATAAG
CGATACTTGTAA
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