mRNA_H-canaliculatus_F_contig1145.1283.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1145.1283.1
Unique NamemRNA_H-canaliculatus_F_contig1145.1283.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1145.1283.1 vs. uniprot
Match: D8LJV4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJV4_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.020e-9
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:  325 MLSSVLKGFKPTFTYGSIFTGFAVDRVPMHKADEVSVE 438
            MLSSVLKG+KPTFTY SIFTGFAVDRVPM KADE+ ++
Sbjct:    1 MLSSVLKGYKPTFTYSSIFTGFAVDRVPMQKADEIRLD 38
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BLAST of mRNA_H-canaliculatus_F_contig1145.1283.1 vs. uniprot
Match: A0A835ZJ29_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ29_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.700e-7
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  280 ESYIVILQPTVTPYEMLSSVLKGFKPTFTYGSIFTGFAVDRV 405
            ++YIVILQPTV P E+L++VLKG KP F YG+IF GF+VDR+
Sbjct:   25 DNYIVILQPTVKPDEILNTVLKGHKPGFVYGTIFVGFSVDRL 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1145.1283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJV4_ECTSI1.020e-981.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZJ29_9STRA4.700e-766.67Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1145contigH-canaliculatus_F_contig1145:26811..27778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_009810.1
Hectar predicted targeting categoryother localisation
Exons1
Model size968
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1145.1283.1prot_H-canaliculatus_F_contig1145.1283.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1145 27009..27251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928829.4724019-UTR-H-canaliculatus_F_contig1145:26810..270081622928829.4724019-UTR-H-canaliculatus_F_contig1145:26810..27008Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1145 26811..27008 +
1696845581.2118459-UTR-H-canaliculatus_F_contig1145:26810..270081696845581.2118459-UTR-H-canaliculatus_F_contig1145:26810..27008Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1145 26811..27008 +
1622928829.5190892-UTR-H-canaliculatus_F_contig1145:27251..277781622928829.5190892-UTR-H-canaliculatus_F_contig1145:27251..27778Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1145 27252..27778 +
1696845581.2291725-UTR-H-canaliculatus_F_contig1145:27251..277781696845581.2291725-UTR-H-canaliculatus_F_contig1145:27251..27778Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1145 27252..27778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928829.495218-CDS-H-canaliculatus_F_contig1145:27008..272511622928829.495218-CDS-H-canaliculatus_F_contig1145:27008..27251Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 27009..27251 +
1696845581.2209249-CDS-H-canaliculatus_F_contig1145:27008..272511696845581.2209249-CDS-H-canaliculatus_F_contig1145:27008..27251Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 27009..27251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1145.1283.1

>prot_H-canaliculatus_F_contig1145.1283.1 ID=prot_H-canaliculatus_F_contig1145.1283.1|Name=mRNA_H-canaliculatus_F_contig1145.1283.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=81bp
MANGPRSGRSSRPHRPPPPTVAEKRIPESYIVILQPTVTPYEMLSSVLKG
FKPTFTYGSIFTGFAVDRVPMHKADEVSVE*
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mRNA from alignment at H-canaliculatus_F_contig1145:26811..27778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1145.1283.1 ID=mRNA_H-canaliculatus_F_contig1145.1283.1|Name=mRNA_H-canaliculatus_F_contig1145.1283.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=968bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1145:26811..27778+ (Hapterophycus canaliculatus Oshoro5f female)
TTTTATTGCGGCGCGGGGACCGCTTGGTTTGTAAGGCTGGGAGAATCGTG
TGAATAAAAAGCCGGATCACAAACTGAGAAAAAAGAGAGGAGATTCGCCC
ACCTCGGGAAAGGGGGCGAGGGGGGAGAAAGAAAGCTGTGAGGGAGCGGC
TGCTGGACAGGGTGCGGCGGGCGGAGTGGCCCCAGCGCGAGGCCTATCAT
GGCGAACGGGCCAAGATCGGGTCGATCAAGTCGACCGCACAGACCGCCGC
CACCGACTGTGGCCGAGAAACGGATTCCGGAATCGTACATCGTCATCCTT
CAGCCGACTGTCACGCCCTACGAGATGCTCTCCTCTGTGCTCAAGGGCTT
CAAGCCCACCTTCACGTACGGGTCAATTTTCACAGGGTTCGCAGTAGATC
GCGTCCCGATGCACAAGGCAGATGAGGTGAGCGTGGAGTAAGAGCACAGC
GAGCGTGGTTGTTGGCTCTCTACTAGCGACTCCCCAATACCTCTCCTCTG
CATGTGGCATGTGGTTCGGTTGTCACGGAGGGGTTTCAAAACGCACCAAA
AACATTGATGCAAAACAAACCTCTCACCCAGACGAGACGAGGGAACTTTG
AGATTTCTGGACACGCAAGGGCGGAGGGGGCGATCCGGTACGATCCCCCT
CTCCTCGCTCGCCCTGAGAATCGACTCGCGACGGGTAGTCGTCGAGTCCG
GAAAGGTCGAGAAGGAATCTCGGAGGGCTTGCGATGGTCGTAGGAGACGA
GCGCACCAAGGTCGGGAAATCTCTTCCCAGCGGAATCGCCGCGATTATTT
TTCTCGCCGTCCGCTTGCTGATTCTCTCACACCCAAGTTCCGTTTTTTGT
TTCTCGCCGTCAAGAGTCGAAACGACCGGCCCTCCGTATGTGCTATCCTT
CTTTCTTTTCCCCACGAACGCTCAGGTACGACTGGACAATCGAGTTCTCA
AGGTGGTGGAGAACCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1145:26811..27778+

>mRNA_H-canaliculatus_F_contig1145.1283.1 ID=mRNA_H-canaliculatus_F_contig1145.1283.1|Name=mRNA_H-canaliculatus_F_contig1145.1283.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1145:26811..27778+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGAACGGGCCAAGATCGGGTCGATCAAGTCGACCGCACAGACCGCC
GCCACCGACTGTGGCCGAGAAACGGATTCCGGAATCGTACATCGTCATCC
TTCAGCCGACTGTCACGCCCTACGAGATGCTCTCCTCTGTGCTCAAGGGC
TTCAAGCCCACCTTCACGTACGGGTCAATTTTCACAGGGTTCGCAGTAGA
TCGCGTCCCGATGCACAAGGCAGATGAGGTGAGCGTGGAGTAAATGGCGA
ACGGGCCAAGATCGGGTCGATCAAGTCGACCGCACAGACCGCCGCCACCG
ACTGTGGCCGAGAAACGGATTCCGGAATCGTACATCGTCATCCTTCAGCC
GACTGTCACGCCCTACGAGATGCTCTCCTCTGTGCTCAAGGGCTTCAAGC
CCACCTTCACGTACGGGTCAATTTTCACAGGGTTCGCAGTAGATCGCGTC
CCGATGCACAAGGCAGATGAGGTGAGCGTGGAGTAA
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