mRNA_H-canaliculatus_F_contig11448.1277.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11448.1277.1
Unique NamemRNA_H-canaliculatus_F_contig11448.1277.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11448.1277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11448contigH-canaliculatus_F_contig11448:1407..2898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.5250008-CDS-H-canaliculatus_F_contig11448:1406..16581622928828.5250008-CDS-H-canaliculatus_F_contig11448:1406..1658Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11448 1407..1658 -
1696845580.8419487-CDS-H-canaliculatus_F_contig11448:1406..16581696845580.8419487-CDS-H-canaliculatus_F_contig11448:1406..1658Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11448 1407..1658 -
1622928828.5355563-CDS-H-canaliculatus_F_contig11448:2850..28981622928828.5355563-CDS-H-canaliculatus_F_contig11448:2850..2898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11448 2851..2898 -
1696845580.8527975-CDS-H-canaliculatus_F_contig11448:2850..28981696845580.8527975-CDS-H-canaliculatus_F_contig11448:2850..2898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11448 2851..2898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11448.1277.1prot_H-canaliculatus_F_contig11448.1277.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11448 1407..2898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11448.1277.1

>prot_H-canaliculatus_F_contig11448.1277.1 ID=prot_H-canaliculatus_F_contig11448.1277.1|Name=mRNA_H-canaliculatus_F_contig11448.1277.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
MLSAKELEDAFEAARQHEAGREEATVAKEPGPSNATASAAAPSSATSAPQ
TRGLAQHEHTLDTDEACARDLQKADEDAHAAARKQRERDDAASESEELM*
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mRNA from alignment at H-canaliculatus_F_contig11448:1407..2898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11448.1277.1 ID=mRNA_H-canaliculatus_F_contig11448.1277.1|Name=mRNA_H-canaliculatus_F_contig11448.1277.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1492bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11448:1407..2898- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGAGCGCCAAAGAGCTGGAGGACGCCTTCGAGGCAGCACGACAGGT
GAGACAAGCCGCTCGGTCGGTCGGGTGGACAGATGCACACCCAACGGCGG
TTGTGCACAAGGTAGACCCGTGCGCGCCTGGGTTCCCCCGCCGTCGGTGC
AGAGCAAGGGGCCTTACACCTGCCCCACCGCCACTCAGCTGGCGTGCAAC
CATTACGAGTACATGTAGACAAGGGCCCTCTCGCGACCCACCTAGCGAAG
ACCTTCAGCGTGGACCTCTCGAAGGGCAACGGAGAAGCCCGCAAAAGCAT
GACGCGAGGCGCTGAGTGGCAGCGCGACAACGCGATGGCTCCGAACTGGG
AGACCATGCTCAGAGCTAAAGACCATGCTCAGAGCGGCTCTTTAGCTCTG
AGCATGGTCTCCCAGGTCGAGGCTATCGCGTTGTCGCGCTGCCACTCAGC
GCCTCGCATCATGCTTCTGCGGGCTTCTCCGTCACCCTCGGAGAGGTCCA
CGCCAAAGGTCTTCGCCAGGTGGGTCGCGAGAGGGCCCTCGTCTACGCGT
ACCAGGTACTTCGTCGTGGTTGCACGCCGGCTGAGTGGCGGTGGGGCAGG
TGTAACATGCCTCCCGTCGTGGTGAGGACCTGACGGACTGGCAGGACACA
GAATCGACGCGCTTTGCAGTACAAGTAGACCGCCGCATTGCATGTTTCCC
TGGGCATCTTACAACCACACATACATTTTTGCTGTGGGAACGTGTGGGGG
CACATTAGAGTAGAATCTGACCCAAAAGGAGCGACTCAAGCAAGTCTGCT
CGCGCCCCCCCATGATAGGCACCTAGTTCGGCCATGCTCACGTGATACTC
CAATGGGTGCGAGCACGGTCGAATAGATTGCCCGTGGGTATCATCTCAAT
CCCGCGGCGCCTCGCATTTTGAAACTTCGTAGAGAATACGCCCGAACGAA
TCGGAACGGGTAGAGGGCCCTTCGAGGTGTTGCTGGACGTCGGAGAGAAG
GTTGCTGGCCGCTGACGACGGAGTCGGCGGTGCGGTGTCCTACAGCTGCA
GTGAGGGCATAGAGCGATGCCCACACCCAGGAGTGCACAACGTGGTGGAT
AACACAGAAACGCTGTCCAGAAGACCACAGCATGTGATCTCACCGGGTAC
CATTTGGTGCTCGTTCGTCTTTCCCCCCCCGCTGCATGCGTGCGGCCGTC
TGCGTGCCTGCGTATCTGCACGAAATGGTGACAACTCCAGCACGAGGCGG
GGAGGGAGGAGGCCACCGTGGCTAAGGAGCCCGGGCCTTCGAACGCCACC
GCCTCCGCCGCCGCTCCGTCTTCGGCTACATCAGCTCCTCAGACAAGGGG
GCTGGCGCAGCACGAGCACACCTTGGACACGGACGAAGCATGCGCCCGCG
ATTTGCAAAAGGCCGACGAGGACGCTCACGCTGCTGCACGTAAGCAGCGT
GAGAGGGACGACGCCGCCAGCGAGTCGGAGGAGCTGATGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11448:1407..2898-

>mRNA_H-canaliculatus_F_contig11448.1277.1 ID=mRNA_H-canaliculatus_F_contig11448.1277.1|Name=mRNA_H-canaliculatus_F_contig11448.1277.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11448:1407..2898- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGAGCGCCAAAGAGCTGGAGGACGCCTTCGAGGCAGCACGACAGAT
GCTGAGCGCCAAAGAGCTGGAGGACGCCTTCGAGGCAGCACGACAGCACG
AGGCGGGGAGGGAGGAGGCCACCGTGGCTAAGGAGCCCGGGCCTTCGAAC
GCCACCGCCTCCGCCGCCGCTCCGTCTTCGGCTACATCAGCTCCTCAGAC
AAGGGGGCTGGCGCAGCACGAGCACACCTTGGACACGGACGAAGCATGCG
CCCGCGATTTGCAAAAGGCCGACGAGGACGCTCACGCTGCTGCACGTAAG
CAGCGTGAGAGGGACGACGCCGCCAGCGAGTCGGAGGAGCTGATGTAGCA
CGAGGCGGGGAGGGAGGAGGCCACCGTGGCTAAGGAGCCCGGGCCTTCGA
ACGCCACCGCCTCCGCCGCCGCTCCGTCTTCGGCTACATCAGCTCCTCAG
ACAAGGGGGCTGGCGCAGCACGAGCACACCTTGGACACGGACGAAGCATG
CGCCCGCGATTTGCAAAAGGCCGACGAGGACGCTCACGCTGCTGCACGTA
AGCAGCGTGAGAGGGACGACGCCGCCAGCGAGTCGGAGGAGCTGATGTAG
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