mRNA_H-canaliculatus_F_contig11440.1273.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11440.1273.1
Unique NamemRNA_H-canaliculatus_F_contig11440.1273.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11440.1273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11440contigH-canaliculatus_F_contig11440:287..3925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons7
Model size1014
Cds size750
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.011636-UTR-H-canaliculatus_F_contig11440:286..3201622928828.011636-UTR-H-canaliculatus_F_contig11440:286..320Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11440 287..320 -
1696845580.6313653-UTR-H-canaliculatus_F_contig11440:286..3201696845580.6313653-UTR-H-canaliculatus_F_contig11440:286..320Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11440 287..320 -
1622928828.1592035-UTR-H-canaliculatus_F_contig11440:3020..31091622928828.1592035-UTR-H-canaliculatus_F_contig11440:3020..3109Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11440 3021..3109 -
1696845580.7027023-UTR-H-canaliculatus_F_contig11440:3020..31091696845580.7027023-UTR-H-canaliculatus_F_contig11440:3020..3109Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11440 3021..3109 -
1622928828.1761906-UTR-H-canaliculatus_F_contig11440:3784..39251622928828.1761906-UTR-H-canaliculatus_F_contig11440:3784..3925Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11440 3785..3925 -
1696845580.7109218-UTR-H-canaliculatus_F_contig11440:3784..39251696845580.7109218-UTR-H-canaliculatus_F_contig11440:3784..3925Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11440 3785..3925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.0327682-CDS-H-canaliculatus_F_contig11440:320..4071622928828.0327682-CDS-H-canaliculatus_F_contig11440:320..407Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 321..407 -
1696845580.6458416-CDS-H-canaliculatus_F_contig11440:320..4071696845580.6458416-CDS-H-canaliculatus_F_contig11440:320..407Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 321..407 -
1622928828.0482423-CDS-H-canaliculatus_F_contig11440:803..9601622928828.0482423-CDS-H-canaliculatus_F_contig11440:803..960Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 804..960 -
1696845580.655806-CDS-H-canaliculatus_F_contig11440:803..9601696845580.655806-CDS-H-canaliculatus_F_contig11440:803..960Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 804..960 -
1622928828.0916157-CDS-H-canaliculatus_F_contig11440:1328..15791622928828.0916157-CDS-H-canaliculatus_F_contig11440:1328..1579Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 1329..1579 -
1696845580.6662252-CDS-H-canaliculatus_F_contig11440:1328..15791696845580.6662252-CDS-H-canaliculatus_F_contig11440:1328..1579Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 1329..1579 -
1622928828.1067362-CDS-H-canaliculatus_F_contig11440:1825..19691622928828.1067362-CDS-H-canaliculatus_F_contig11440:1825..1969Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 1826..1969 -
1696845580.675227-CDS-H-canaliculatus_F_contig11440:1825..19691696845580.675227-CDS-H-canaliculatus_F_contig11440:1825..1969Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 1826..1969 -
1622928828.1202803-CDS-H-canaliculatus_F_contig11440:2299..23721622928828.1202803-CDS-H-canaliculatus_F_contig11440:2299..2372Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 2300..2372 -
1696845580.6860654-CDS-H-canaliculatus_F_contig11440:2299..23721696845580.6860654-CDS-H-canaliculatus_F_contig11440:2299..2372Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 2300..2372 -
1622928828.1336327-CDS-H-canaliculatus_F_contig11440:2982..30201622928828.1336327-CDS-H-canaliculatus_F_contig11440:2982..3020Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 2983..3020 -
1696845580.6944177-CDS-H-canaliculatus_F_contig11440:2982..30201696845580.6944177-CDS-H-canaliculatus_F_contig11440:2982..3020Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11440 2983..3020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11440.1273.1prot_H-canaliculatus_F_contig11440.1273.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11440 321..3020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11440.1273.1

>prot_H-canaliculatus_F_contig11440.1273.1 ID=prot_H-canaliculatus_F_contig11440.1273.1|Name=mRNA_H-canaliculatus_F_contig11440.1273.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=250bp
MLEAKPVADNEPPRAMVLVGKADQQKAQTDPVLSPDEVQLRVVLATVSSW
NSGTVTLALLLIVVLVLLAMSEARRMRESAAARRQLDDLRRRTEQDRGRL
MEENDQEQHRGAADRHSLVQERDRQRQRDEETRARLIRHHVREARGLRRQ
IRQEQDRQGLLERAAQVAETRRARVALMTREVQQERQQERQQRQQEQQQW
EQQRQQEEQQWEHARQQHENHIELLRSSMKEAAQGMRDLRAEVELMDSD*
back to top

mRNA from alignment at H-canaliculatus_F_contig11440:287..3925-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11440.1273.1 ID=mRNA_H-canaliculatus_F_contig11440.1273.1|Name=mRNA_H-canaliculatus_F_contig11440.1273.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3639bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11440:287..3925- (Hapterophycus canaliculatus Oshoro5f female)
GGCCCGGCGGTAACCTGGAGGTAACAGGGTTGAGGAGCACCTGGGACGCG
GTTTTCCCGACCAACGGCGGCATCGTCGTGTGCACCACGAAGGGTCAAGG
GACCAAGCCGGCGGCAGCCGACAGAGCGGGGGCAGTGTTTGGTGAGAGGC
TTTTCTCCTGTTGTTTTCAAGCCTGCTCTCGACATTGCTTCCTCTTTCCG
CCGCTCTTCCTTGATTGCATTTTAGATGTTCTTGTTCTTCCTGCTTTTTC
GTTCACCCATGTTGTTTTTTGCATGAACGCCTTCGTTCAAGAGCTCCGGT
GTGGAAATACTCATGTTTGATGGTCCAAGCTCGTGGCCAGCCCCTTTTCA
GCGGATCGTCGTGCCATGTGGCAGCGTAGAGATTGGGTTGCCCTATTCGG
CGAGTTTTGTTTTTCAACGTGATAAATCGCTACGCGTCATCGGAGTAAGG
CGACTCTTCCGTCCACCCATCCAGCGTGATATTTCTCCCTTGGTGGTGTC
CGGTACGACCAACCTGAAGTAGCAAGAAAAATTGTACGCTCAGGAAACGA
CCATCACGAAGTCCGATCAGCTGGTTCGTCTGTTTGTCTTACGTCGCCGC
CTTACCGGCATTTGGGAGAGAGAGTAGGGTGGGTGCGGCCGAGGCGACAA
CAATTCACTGTGCGATGACTTGGCAGGTATCGTTCGGTCCACGAGTAATG
GAGTCACCCCCATCTCTCCACGTCCGTCCTTTTGAGATGTCTGCTTGCAT
CGGATCGAATCGAAACCAATCGAAGCGTTGCCCGTCGTCCTCTCATTTGC
CCACGCGTGCTTCAAGAAAACGAGATCGGAGAGGTGGCCGGGTGCTTGGC
CGTGCCGGAAGGTTCGATCGCTGCAGACACGCTGCCAACGTGCGTGGTGG
ACGACATGCTGGAGGCAAAGCCCGTCGCTGACAACGAGCCCCCGTGAGTA
CTTCATGCCGAACTGCGGAATATATTCTCTTGCCAGATTTTCTGCCAGGT
ACGCGAGACCTGGCGGTGCGTACTGGATGTTTCTTTGTTGGCTCCTCCAC
GCGTCGTACCTAGGGCAGTACCCGGCCTAGGTCACACGCGCGCGGTTGTC
GAATCTGTTCGCCTATCCCTTTGCGACGAGCCAATCAATCATCAAGACCG
AGGTTTCCAAAGTCTCTGAGGCATCCTTCGGCACACTCGCAACGTGCGAC
TCGTCGGTTTTTGTCGGGCTATCGAGGTCGGCAGCACTGTCCAAGGGCAG
GGAGGAGCGGTCGATGTCTGGCTTTTCATTCCAAGCGCCGGCAGGAGGTT
GGAGGATTTGTGTCGTTCCCATCTTCGCCTGCTTCCATCTCCCGTGGCGT
GGGTCACGTGTGGTATCGTTCTCATCCGCTGCATTCTCGTCCATTTTCTG
CGCGAGTCGTGGGATGTTGGTGCTCTGCCATGTGCCCTTTGATCCTGCCC
TACGTAGCTGTTGCCTCGACCTCTCTGGTTTATCATGCGACAAGATGATT
GGAAGAGGAGCTCATCTAATGTGCAGAAAACAATATTGGTATTTCAACAC
CAGGCGCGCGATGGTGCTCGTGGGCAAGGCGGACCAGCAGAAAGCTCAGA
CCGACCCCGTCCTCTCCCCTGACGAGGTAAGCTAGTGAAACCTGGATGAC
TGTTAGCAGCACGTCTGAGAGAGTGGCGGTCGTCACAGGAGACCAAAGGA
AGGCGCCACATTGTGCAGAAACGACGCCAGTACGAACGACGCAGTGGGGG
CAAGAGGTCGCGGTTTGTTGTTAGTTTCCTTGCCGCTGTCGTTGGTGTTT
TTCTTTGCAGGCAAAACGTGGTTGCTGTTGTGATCGTCATGGTCGTCACA
GCTTCAGTGCATGAGATACCGCGATGCAACAGTTTGCTTGGCCGGTTTCG
TTCGAGGGCGGTCGATTTTTAAGCGCTCCTCGTCCAACCCCGATTGTCCT
CCAAAGGTGCAGCTGAGGGTTGTTCTGGCGACCGTGAGCTCGTGGAACAG
CGGCACCGTGACCCTCGCCCTGCTGCTAATCGTGGTATTGGTGCTTCTGG
CAATGTCCGAAGCGCGGCGGATGCGGGAGTCGGCAGCGGCGAGGCGACAG
GTAAGCCGCTACAGCCACCGTCATCGTCGCAGTTGATGTTGCCGTCCTGT
CCGAGTTGTTGCTTTTTTGTGGCTGCCCTGTTGCGCGCATGATCATGTCA
CGGTGGCCTCATATTGAACTGCCTCAAAACAGTGGGTCGCAAGACATGAC
GGCATCATGGACAATCCTCTCGGTAAGGCTGGCTGTTTCAGCATTGCGCT
GAGAGCATCTTCGTGCAGTAAAGACCCTTCACTGTGTTCGTGACAGCTCG
ACGACCTGCGGCGAAGGACCGAACAAGATCGCGGCCGCCTCATGGAGGAA
AACGATCAAGAGCAGCACAGGGGCGCAGCAGACCGACACAGCCTCGTCCA
AGAGCGCGATCGGCAGAGGCAAAGGGACGAAGAAACTCGCGCTCGCCTCA
TCCGGCATCACGTGCGGGAGGCCAGGGGGCTCCGGCGACAGATACGGCAG
GAGCAAGATCGACAGGGCTTGTTGGAGAGGGCGGCACAGGTCGCCGAGTG
AGTTTTCTCGATGGCCAGCGGGCCGCCGTTTGCAGTCGCTATCGTCGCTG
TCGTCGCTGTCGTCGCTGTCGTCGCTGTCGTCGCGATGGGAGGCAGTTGC
CGGTCCCCGTGTGTGCGTCGCACCGTTTGTGCATGGATGGTGGTCGGGCG
GCTGCGTTTCCGTTTGTGAAGCAGAGGAGGATGGGAAGGGTGCGCGCTTG
TTTGAGCGATGCGGGAGCGTGGATATGATGTGGCTCTGTAGTTGGCGAAG
AGCGACGATGCCATCGTACAAAGCTGGAACACAAGTGTTGTACAAGTACC
GCTCTTGGCATCCCCGCTTGCGGACCGACGAAGCCAACGCAGAACCTTGA
TTCATCCATTTCCAGGACCCGGAGAGCCAGAGTGGCCTTGATGACACGGG
AGGTGCAGCAGGAGCGGCAGCAGGAGCGGCAGCAGCGGCAGCAGGAGCAA
CAGCAGTGGGAGCAGCAGCGGCAGCAGGAGGAGCAGCAGTGGGAGCACGC
GCGACAGCAGCACGAGAATCACGTGCGGTCAAAGCAGCAGTAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGGGC
GCGTTGAGGGGAGGTGTTCTTACAGGAGGGTCTCGGACGAAAAGCCGGAA
TAGCCGACAAACGTGGATACAAGCCTCAGCATGAGACAAGCAAAGAGCAT
TCTGTACCATGCAAACAAGTAGGGCGCAGCATGCAGCGGGAGGAGCGCCG
GCGGTGCAAGACTTCGAAATCAGACGCAGTTCCCGGCGGCCTTCTTCGCA
AGGCGATGCGCTTTACACTTTGTTTGGGAAAGCCGACGGGACTGCGATAA
ACGCTTCAAGATGGGTAGCTTAACGACACTCTTCCCCCCCCGCCGTTGCC
CGATGTCCTGTGATACAGATTGAGTTGCTCCGGTCGTCTATGAAGGAGGC
TGCGCAAGGCATGCGGGATCTCAGAGCCGAGGTGGAGCTCATGGACAGCG
ATTGAACGCTCCACAATAGGCGGCCAAGGTGGTGCTCAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11440:287..3925-

>mRNA_H-canaliculatus_F_contig11440.1273.1 ID=mRNA_H-canaliculatus_F_contig11440.1273.1|Name=mRNA_H-canaliculatus_F_contig11440.1273.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1500bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11440:287..3925- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGAGGCAAAGCCCGTCGCTGACAACGAGCCCCCATGCTGGAGGCA
AAGCCCGTCGCTGACAACGAGCCCCCGCGCGCGATGGTGCTCGTGGGCAA
GGCGGACCAGCAGAAAGCTCAGACCGACCCCGTCCTCTCCCCTGACGAGG
CGCGCGATGGTGCTCGTGGGCAAGGCGGACCAGCAGAAAGCTCAGACCGA
CCCCGTCCTCTCCCCTGACGAGGTGCAGCTGAGGGTTGTTCTGGCGACCG
TGAGCTCGTGGAACAGCGGCACCGTGACCCTCGCCCTGCTGCTAATCGTG
GTATTGGTGCTTCTGGCAATGTCCGAAGCGCGGCGGATGCGGGAGTCGGC
AGCGGCGAGGCGACAGGTGCAGCTGAGGGTTGTTCTGGCGACCGTGAGCT
CGTGGAACAGCGGCACCGTGACCCTCGCCCTGCTGCTAATCGTGGTATTG
GTGCTTCTGGCAATGTCCGAAGCGCGGCGGATGCGGGAGTCGGCAGCGGC
GAGGCGACAGCTCGACGACCTGCGGCGAAGGACCGAACAAGATCGCGGCC
GCCTCATGGAGGAAAACGATCAAGAGCAGCACAGGGGCGCAGCAGACCGA
CACAGCCTCGTCCAAGAGCGCGATCGGCAGAGGCAAAGGGACGAAGAAAC
TCGCGCTCGCCTCATCCGGCATCACGTGCGGGAGGCCAGGGGGCTCCGGC
GACAGATACGGCAGGAGCAAGATCGACAGGGCTTGTTGGAGAGGGCGGCA
CAGGTCGCCGACTCGACGACCTGCGGCGAAGGACCGAACAAGATCGCGGC
CGCCTCATGGAGGAAAACGATCAAGAGCAGCACAGGGGCGCAGCAGACCG
ACACAGCCTCGTCCAAGAGCGCGATCGGCAGAGGCAAAGGGACGAAGAAA
CTCGCGCTCGCCTCATCCGGCATCACGTGCGGGAGGCCAGGGGGCTCCGG
CGACAGATACGGCAGGAGCAAGATCGACAGGGCTTGTTGGAGAGGGCGGC
ACAGGTCGCCGAGACCCGGAGAGCCAGAGTGGCCTTGATGACACGGGAGG
TGCAGCAGGAGCGGCAGCAGGAGCGGCAGCAGCGGCAGCAGGAGCAACAG
CAGTGGGAGCAGCAGCGGCAGCAGGAGGAGCAGCAGTGGGAGCACGCGCG
ACAGCAGCACGAGAATCACGACCCGGAGAGCCAGAGTGGCCTTGATGACA
CGGGAGGTGCAGCAGGAGCGGCAGCAGGAGCGGCAGCAGCGGCAGCAGGA
GCAACAGCAGTGGGAGCAGCAGCGGCAGCAGGAGGAGCAGCAGTGGGAGC
ACGCGCGACAGCAGCACGAGAATCACATTGAGTTGCTCCGGTCGTCTATG
AAGGAGGCTGCGCAAGGCATGCGGGATCTCAGAGCCGAGGTGGAGCTCAT
GGACAGCGATTGAATTGAGTTGCTCCGGTCGTCTATGAAGGAGGCTGCGC
AAGGCATGCGGGATCTCAGAGCCGAGGTGGAGCTCATGGACAGCGATTGA
back to top