mRNA_H-canaliculatus_F_contig11426.1256.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11426.1256.1
Unique NamemRNA_H-canaliculatus_F_contig11426.1256.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11426.1256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11426contigH-canaliculatus_F_contig11426:707..1507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size803
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.2712073-UTR-H-canaliculatus_F_contig11426:706..9311622928826.2712073-UTR-H-canaliculatus_F_contig11426:706..931Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11426 707..931 +
1696845579.9890764-UTR-H-canaliculatus_F_contig11426:706..9311696845579.9890764-UTR-H-canaliculatus_F_contig11426:706..931Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11426 707..931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.284098-CDS-H-canaliculatus_F_contig11426:931..15071622928826.284098-CDS-H-canaliculatus_F_contig11426:931..1507Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11426 932..1507 +
1696845579.9976177-CDS-H-canaliculatus_F_contig11426:931..15071696845579.9976177-CDS-H-canaliculatus_F_contig11426:931..1507Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11426 932..1507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11426.1256.1prot_H-canaliculatus_F_contig11426.1256.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11426 932..1507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11426.1256.1

>prot_H-canaliculatus_F_contig11426.1256.1 ID=prot_H-canaliculatus_F_contig11426.1256.1|Name=mRNA_H-canaliculatus_F_contig11426.1256.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=192bp
MNINTTPRRERIKAGARSQTCLRQGGECGVDKQLPYQYRCILLNRYPRQP
VHRKLHTRMIVSARTEVTASHTTARHAFGPLKERARALKRAGNARHDQYS
SFLRQKYAVVVVHRSLSPLSFPTAATTEGRLHAAHACLHTYSIRNHRKNV
LRTIEAAEPCEQVHNDQFLLLPRPLPLPRPVLPPPPPLPNNP
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mRNA from alignment at H-canaliculatus_F_contig11426:707..1507+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11426.1256.1 ID=mRNA_H-canaliculatus_F_contig11426.1256.1|Name=mRNA_H-canaliculatus_F_contig11426.1256.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=801bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11426:707..1507+ (Hapterophycus canaliculatus Oshoro5f female)
CCAAAAAACACATACTTAGTAAAGCGCTGGAGAGTAATCCCGCAAGACAC
GTGTGAAAGGGGCGACGTACAATTATCCCCTCCACCCTGCCCATGCCCGT
CGATTCCAGATCCTCCCGTACATTCGCCCCAACATGCTGCGCGAGGAAAA
AGGAAGGCTGCATCTCAGTGAAAACCGTGCGAATCCCATGAACATGCGTA
AAACACTCGACGTGACGACACAAACATGAACATCAACACAACACCAAGAA
GAGAGCGAATAAAGGCAGGAGCACGCTCACAAACGTGCCTACGCCAAGGC
GGAGAATGCGGCGTCGACAAGCAGCTACCATACCAATACCGGTGTATTTT
GCTGAATCGATACCCGCGGCAACCAGTACACAGAAAACTGCACACGAGGA
TGATCGTGTCTGCTCGAACAGAAGTCACCGCTAGTCACACCACAGCCAGA
CACGCGTTCGGACCTCTCAAAGAGCGCGCGCGCGCGCTCAAGCGCGCAGG
AAACGCTCGACACGACCAATATTCCTCTTTCTTAAGACAAAAATATGCCG
TGGTTGTCGTCCATCGCTCGCTTTCCCCTCTCTCATTCCCGACCGCAGCA
ACAACCGAAGGCCGTCTCCATGCAGCGCATGCGTGTCTACATACATACAG
TATCCGGAACCACAGAAAAAATGTACTTCGTACAATAGAAGCTGCCGAAC
CATGTGAACAAGTCCACAATGATCAATTTCTGCTCCTCCCTCGCCCCCTA
CCTCTACCCCGCCCCGTCCTGCCACCGCCGCCGCCGCTGCCGAACAATCC
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11426:707..1507+

>mRNA_H-canaliculatus_F_contig11426.1256.1 ID=mRNA_H-canaliculatus_F_contig11426.1256.1|Name=mRNA_H-canaliculatus_F_contig11426.1256.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1152bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11426:707..1507+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACATCAACACAACACCAAGAAGAGAGCGAATAAAGGCAGGAGCACG
CTCACAAACGTGCCTACGCCAAGGCGGAGAATGCGGCGTCGACAAGCAGC
TACCATACCAATACCGGTGTATTTTGCTGAATCGATACCCGCGGCAACCA
GTACACAGAAAACTGCACACGAGGATGATCGTGTCTGCTCGAACAGAAGT
CACCGCTAGTCACACCACAGCCAGACACGCGTTCGGACCTCTCAAAGAGC
GCGCGCGCGCGCTCAAGCGCGCAGGAAACGCTCGACACGACCAATATTCC
TCTTTCTTAAGACAAAAATATGCCGTGGTTGTCGTCCATCGCTCGCTTTC
CCCTCTCTCATTCCCGACCGCAGCAACAACCGAAGGCCGTCTCCATGCAG
CGCATGCGTGTCTACATACATACAGTATCCGGAACCACAGAAAAAATGTA
CTTCGTACAATAGAAGCTGCCGAACCATGTGAACAAGTCCACAATGATCA
ATTTCTGCTCCTCCCTCGCCCCCTACCTCTACCCCGCCCCGTCCTGCCAC
CGCCGCCGCCGCTGCCGAACAATCCCATGAACATCAACACAACACCAAGA
AGAGAGCGAATAAAGGCAGGAGCACGCTCACAAACGTGCCTACGCCAAGG
CGGAGAATGCGGCGTCGACAAGCAGCTACCATACCAATACCGGTGTATTT
TGCTGAATCGATACCCGCGGCAACCAGTACACAGAAAACTGCACACGAGG
ATGATCGTGTCTGCTCGAACAGAAGTCACCGCTAGTCACACCACAGCCAG
ACACGCGTTCGGACCTCTCAAAGAGCGCGCGCGCGCGCTCAAGCGCGCAG
GAAACGCTCGACACGACCAATATTCCTCTTTCTTAAGACAAAAATATGCC
GTGGTTGTCGTCCATCGCTCGCTTTCCCCTCTCTCATTCCCGACCGCAGC
AACAACCGAAGGCCGTCTCCATGCAGCGCATGCGTGTCTACATACATACA
GTATCCGGAACCACAGAAAAAATGTACTTCGTACAATAGAAGCTGCCGAA
CCATGTGAACAAGTCCACAATGATCAATTTCTGCTCCTCCCTCGCCCCCT
ACCTCTACCCCGCCCCGTCCTGCCACCGCCGCCGCCGCTGCCGAACAATC
CC
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