mRNA_H-canaliculatus_F_contig1142.1253.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1142.1253.1
Unique NamemRNA_H-canaliculatus_F_contig1142.1253.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1142.1253.1 vs. uniprot
Match: D7FMB0_ECTSI (Similar to Solute carrier family 25 (Mitochondrial carrier citrate transporter), member 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMB0_ECTSI)

HSP 1 Score: 492 bits (1266), Expect = 5.190e-167
Identity = 260/295 (88.14%), Postives = 268/295 (90.85%), Query Frame = 3 
Query:  123 MGAPAHLKPKHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKEKGVTYGSVMRNTVKNQGALGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSNADGTDKYGLGAAKGFVAGLGAGATEATLVTTAQETIKIKLIDDQFSRAKPLYKNFFHGVKTIVAESGLAGIYKGWLPTVLKVSSAQATRFGVFQVLKSSSFYGKDSTAKSAAAGAAAGATSVFLFQGIDVVKSRMQGLQSAQYKSTLHCASEMLKNEGITSFYRGMAPRLTRVTCEVAITMSLYGEVVKFLNSVWETD 1007
            MG PAHLKP HKGKAVLAGGISGVVEIC+TYPLEYVKTTRQLSK+  VTYGSVMRNTVKN G  GFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLS  +G DKYGLGAAKGFVAGLGAGA EATLVTTAQETIKIKLIDDQFSR KPLYKNFFHGVKTIVAESG +G       TVLKVS+AQATRFGVFQVLKSS +YGKDS  KSAAAGAAAGA SVF FQGIDVVKSRMQGL+SAQY+STLHCASEMLKNEGITSFYRGMAPRLTRV CEVAITMSLYGEVVKFLNSVW TD
Sbjct:    1 MGPPAHLKPNHKGKAVLAGGISGVVEICMTYPLEYVKTTRQLSKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSTPEGGDKYGLGAAKGFVAGLGAGAAEATLVTTAQETIKIKLIDDQFSREKPLYKNFFHGVKTIVAESGFSG---DGCRTVLKVSTAQATRFGVFQVLKSSPYYGKDSPVKSAAAGAAAGAVSVFAFQGIDVVKSRMQGLESAQYRSTLHCASEMLKNEGITSFYRGMAPRLTRVMCEVAITMSLYGEVVKFLNSVWITD 292
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1142.1253.1 vs. uniprot
Match: W7TKG4_9STRA (Solute carrier family 25 (Mitochondrial carrier citrate transporter) member 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKG4_9STRA)

HSP 1 Score: 358 bits (920), Expect = 5.560e-115
Identity = 190/293 (64.85%), Postives = 229/293 (78.16%), Query Frame = 3 
Query:  129 APAHLKPKHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKEKGVTYGSVMRNTVKNQGALGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSNADGTDKYGLGAAKGFVAGLGAGATEATLVTTAQETIKIKLIDDQFSRAKPLYKNFFHGVKTIVAESGLAGIYKGWLPTVLKVSSAQATRFGVFQVLKSSSFYGKDSTAKSAAAGAAAGATSVFLFQGIDVVKSRMQGLQSAQYKSTLHCASEMLKNEGITSFYRGMAPRLTRVTCEVAITMSLYGEVVKFLNSVWETD 1007
            AP   KP HKGKAVLAGG+SG  EIC T+P EYVKTT+QLS  + V+   V+  T+  +G  GFYRGLSSM+YFAAPKAAIRF +FEF SGLL++A+G DKYGLG AKGF+AGLGAG  EA  VTT QETIKIKLI DQF R    Y+ FFHGV+TIVAE  L+G+Y+G LPT+LKVS+AQATRFG+F V+K   +   D+  KSAAAGA AG  SV  FQGIDVVKSRMQGL++A+YKST  C  ++LKNEG+  FY+G+ PRLTRV  EV ITMS+YGE+VK L++VW+T+
Sbjct:    2 APIGNKPTHKGKAVLAGGLSGAFEICCTFPTEYVKTTQQLSP-RPVSVKQVISETMAERGFFGFYRGLSSMLYFAAPKAAIRFSSFEFFSGLLTDANGGDKYGLGQAKGFLAGLGAGTMEAIFVTTPQETIKIKLIHDQF-RGTNKYQGFFHGVRTIVAEEKLSGVYRGLLPTILKVSTAQATRFGIFSVIKD--YVKLDTPIKSAAAGATAGGISVLAFQGIDVVKSRMQGLEAAKYKSTWDCVGQILKNEGVAGFYKGVGPRLTRVCLEVGITMSMYGEIVKLLDAVWDTN 290
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1142.1253.1 vs. uniprot
Match: A0A6U3C197_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3C197_9EUKA)

HSP 1 Score: 356 bits (913), Expect = 4.830e-114
Identity = 186/295 (63.05%), Postives = 225/295 (76.27%), Query Frame = 3 
Query:  123 MGAPAHLKPKHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKEKGVTYGSVMRNTVKNQGALGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSNADGTDKYGLGAAKGFVAGLGAGATEATLVTTAQETIKIKLIDDQFSRAKPLYKNFFHGVKTIVAESGLAGIYKGWLPTVLKVSSAQATRFGVFQVLKSSSFYGKDSTAKSAAAGAAAGATSVFLFQGIDVVKSRMQGLQSAQYKSTLHCASEMLKNEGITSFYRGMAPRLTRVTCEVAITMSLYGEVVKFLNSVWETD 1007
            MG PAHLKPKHKGKA++AGGISG +EIC TYP+EY KT +QLS E  ++ G+V+  T+K+ G LG YRGLSSM+YFA PKAAIRFG FE CS +L + DG D YGLG AKGFVAGLGAG  EA  VTT QETIK+KLI DQF    P ++ FFHGV TI+ E GL   YKG  PT+LKVS+AQATRFG+F  +     Y K S   +A  GA AG TSV +FQ IDVVKSRMQGL++++YK+++ C  ++L+NEG+   Y+G+ PRLTRV CEVAITMSLYGEVVKFLN +W+TD
Sbjct:    1 MGPPAHLKPKHKGKALVAGGISGALEICCTYPIEYTKTFQQLSTEP-LSMGNVVSRTLKSAGPLGMYRGLSSMLYFATPKAAIRFGGFETCSSMLVDKDGRDIYGLGKAKGFVAGLGAGTLEAIFVTTPQETIKVKLIHDQFLSETPRFRGFFHGVSTIIREEGLMECYKGLAPTILKVSTAQATRFGIFNAIPHE--YRK-SPWGAAMCGAFAGGTSVIIFQWIDVVKSRMQGLEASKYKNSVDCFFKILQNEGVAGLYKGVKPRLTRVCCEVAITMSLYGEVVKFLNKIWKTD 291
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1142.1253.1 vs. uniprot
Match: A0A7S1VIB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIB4_9STRA)

HSP 1 Score: 343 bits (879), Expect = 5.590e-109
Identity = 180/289 (62.28%), Postives = 220/289 (76.12%), Query Frame = 3 
Query:  144 KPKHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKEKGVTYGSVMRNTVKNQGALGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSNADGTDKYGLGAAKGFVAGLGAGATEATLVTTAQETIKIKLIDDQF-SRAKPLYKNFFHGVKTIVAESGLAGIYKGWLPTVLKVSSAQATRFGVFQVLKSSSFYGKDSTAKSAAAGAAAGATSVFLFQGIDVVKSRMQGLQSAQYKSTLHCASEMLKNEGITSFYRGMAPRLTRVTCEVAITMSLYGEVVKFLNSVWETD 1007
            KPKHKGKA++AG  +G+ EIC TYP EYVKT+ QL+  + VT G+V+  T    G +GFYRGL SMVYFAAPKAAIRF AFE CSGLLS  +G D YGLG AKGFVAGLGAG  EA  VTT QETIK++LI+D F +   P Y++FFHGVK+IV E G AGIYKG  PT+ KVS+AQATRFGV+ ++ + +   +++  K+AA+GA AG  SV LFQGIDVVKSRMQGL + +Y+ST HC  E+LK EG  +FY+G+ PRLTRV  EV ITMSLYGE+VK L+  W+TD
Sbjct:    6 KPKHKGKALVAGATAGIFEICCTYPTEYVKTSMQLAT-RPVTAGNVISTTFAEAGPVGFYRGLPSMVYFAAPKAAIRFAAFETCSGLLSGPNGEDIYGLGKAKGFVAGLGAGTMEAVFVTTPQETIKVRLINDAFRTDGPPKYRSFFHGVKSIVGEYGFAGIYKGVAPTIFKVSTAQATRFGVYSMIPAEN---RNTPVKAAASGAFAGGVSVLLFQGIDVVKSRMQGLDAHKYRSTFHCVRELLKKEGFLAFYKGVGPRLTRVCLEVGITMSLYGEIVKVLDMYWKTD 290
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1142.1253.1 vs. uniprot
Match: A0A0M0J9A5_9EUKA (Tricarboxylate transport mitochondrial n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J9A5_9EUKA)

HSP 1 Score: 327 bits (838), Expect = 1.560e-102
Identity = 177/292 (60.62%), Postives = 207/292 (70.89%), Query Frame = 3 
Query:  129 APAHLKPKHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKEKGVTYGSVMRNTVKNQGALGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSNADGTDKYGLGAAKGFVAGLGAGATEATLVTTAQETIKIKLIDDQFSRAKPLYKNFFHGVKTIVAESGLAGIYKGWLPTVLKVSSAQATRFGVFQVLKSSSFYGKDSTAKSAAAGAAAGATSVFLFQGIDVVKSRMQGLQSAQYKSTLHCASEMLKNEGITSFYRGMAPRLTRVTCEVAITMSLYGEVVKFLNSVWET 1004
            AP   KPKH GKA++AGGISG +EIC TYPLEY KT  QL K  G     V+R+T+K  G LGFYRGLSSMVYFA PKAA+RF AFE  S +L  +DG   +G     GF+AGL AG  EA +V+T QETIKI+LIDDQF    P +K FFHGV T++ E G  GIY G  PTVLKV++AQ TRFGVF V+ S   Y K   +  AA GA AG  SV +FQG+DVVKSRMQGL  A+Y S+LHCA EML NEG  SFY+G+ PRL+RV CEVAITM+LY EVVK L+  W T
Sbjct:    2 APTGNKPKHAGKAIVAGGISGAIEICCTYPLEYTKTVAQLDKGSGGGAMKVVRDTLKTHGPLGFYRGLSSMVYFATPKAALRFSAFEAASDMLKTSDGKPMFGK--VNGFIAGLVAGTAEAIVVSTPQETIKIRLIDDQFKSETPRFKGFFHGVYTLIKEEGFFGIYHGVAPTVLKVATAQGTRFGVFNVIPSE--YRKTPVSV-AACGAFAGGVSVLIFQGLDVVKSRMQGLDGAKYASSLHCAREMLVNEGWLSFYKGVGPRLSRVCCEVAITMTLYAEVVKVLDKYWVT 288
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1142.1253.1 vs. uniprot
Match: A0A7S1B958_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B958_9STRA)

HSP 1 Score: 323 bits (829), Expect = 2.660e-101
Identity = 170/288 (59.03%), Postives = 219/288 (76.04%), Query Frame = 3 
Query:  144 KPKHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKEKGVTYGSVMRNTVKNQGALGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSNADGTDKYGLGAAKGFVAGLGAGATEATLVTTAQETIKIKLIDDQF-SRAKPLYKNFFHGVKTIVAESGLAGIYKGWLPTVLKVSSAQATRFGVFQVLKSSSFYGKDSTAKSAAAGAAAGATSVFLFQGIDVVKSRMQGLQSAQYKSTLHCASEMLKNEGITSFYRGMAPRLTRVTCEVAITMSLYGEVVKFLNSVWET 1004
            KPKHKGKA++AG  +G+ EI  TYP EYVKTT QLS +K V+  +++++T+ + G LGFYRGL SMVYFA PKA+ RF AFE+ S LL N D  D++GLG AKGFVAGLGAG  EA  +TT QETIK++LI+D F +   P YK+F HGV++IV E G  G+YKG  PT++KVS+AQATRFGVFQV+  +    +D+  K+A AGA AG  SV LFQGIDV+KSRMQGL++++Y+ST HC SE+ KNEG  +FY+G+ PRLTRV  EV ITMS+YGE+VK ++ +  T
Sbjct:    6 KPKHKGKALVAGACAGIFEISCTYPTEYVKTTMQLSTKK-VSVPTIIKDTMSSAGPLGFYRGLPSMVYFAGPKASTRFFAFEYFSALL-NGDSGDRFGLGKAKGFVAGLGAGTMEAIFITTPQETIKVRLINDAFRTDGPPKYKSFSHGVRSIVGEFGFGGLYKGLFPTIIKVSTAQATRFGVFQVIPPTM---RDTPIKAAGAGAFAGGVSVLLFQGIDVIKSRMQGLEASKYRSTAHCVSEIFKNEGFLAFYKGVGPRLTRVCLEVGITMSMYGEIVKAVSRIVNT 288
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1142.1253.1 vs. uniprot
Match: A0A7S0END0_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0END0_9EUKA)

HSP 1 Score: 320 bits (820), Expect = 7.480e-100
Identity = 173/289 (59.86%), Postives = 212/289 (73.36%), Query Frame = 3 
Query:  144 KPKHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKEKGVTYGSVMRNTVKNQGALGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSNADGTDKYGLGAAKGFVAGLGAGATEATLVTTAQETIKIKLIDDQFSRAK--PLYKNFFHGVKTIVAESGLAGIYKGWLPTVLKVSSAQATRFGVFQVLKSSSFYGKDSTAKSAAAGAAAGATSVFLFQGIDVVKSRMQGLQSAQYKSTLHCASEMLKNEGITSFYRGMAPRLTRVTCEVAITMSLYGEVVKFLNSVWET 1004
            KP H GKAV+AGGISG VEIC TYP+E+ KT  QLS +K  T   V++NTV+ +G LG Y+GL SMVYFA PKAAIRF  FE  S  +   DG+  +G  AA  F+AGL AGA EA  VTT QETIKIKLIDDQF   +  P +K FFHGVKTIV+E G AGIY G  PT+LKV++AQATRFGV+  + +   Y K     SA +GA AG  SV +FQG+DV+KSRMQGL +A+Y S++HC  E++ NEGI + Y+G+ PR+TRV CEVAITM+LYGEVVK L+SVW+T
Sbjct:    7 KPSHAGKAVVAGGISGAVEICCTYPIEFTKTVLQLSTQKQ-TAMDVVKNTVRTRGVLGLYKGLDSMVYFATPKAAIRFSGFEAASNAMRAPDGSPMFG--AATSFLAGLAAGAIEALFVTTPQETIKIKLIDDQFKTQEGGPRFKGFFHGVKTIVSEEGFAGIYHGLSPTILKVATAQATRFGVYMYIPAD--YRKTPLG-SACSGAFAGGFSVIIFQGLDVIKSRMQGLDAAKYTSSIHCLKELIANEGIMALYKGVGPRMTRVCCEVAITMTLYGEVVKLLDSVWDT 289
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1142.1253.1 vs. uniprot
Match: A0A6V3A8C4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3A8C4_HETAK)

HSP 1 Score: 317 bits (813), Expect = 4.610e-99
Identity = 170/295 (57.63%), Postives = 209/295 (70.85%), Query Frame = 3 
Query:  123 MGAPAHLKPKHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKEKGVTYGSVMRNTVKNQGALGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSNADGTDKYGLGAAKGFVAGLGAGATEATLVTTAQETIKIKLIDDQFSRAKPLYKNFFHGVKTIVAESGLAGIYKGWLPTVLKVSSAQATRFGVFQVLKSSSFYGKDSTAKSAAAGAAAGATSVFLFQGIDVVKSRMQGLQSAQYKSTLHCASEMLKNEGITSFYRGMAPRLTRVTCEVAITMSLYGEVVKFLNSVWETD 1007
            MG PAHLKPKHKGKA+LAG ISGVVEICITYP+EY KT +QL+  K ++   V++NT++  G  G YRGLSSMVY A PKA +RF  FE  + +L N+       LG  KGF AGLGAG  EA  VTT QETIK+KLIDDQF   KP +  FFHGV+TIVAE+GL+G Y+G  PT+ KV++AQATRFG+F ++ +     + + A SAAAGA AG  SV LF  +DVVKSRMQGL + +Y+  L C  ++    G  + Y+G  PR  RV CEVAITM+LYGEVV+ LNSVW TD
Sbjct:    1 MGPPAHLKPKHKGKALLAGAISGVVEICITYPIEYTKTMQQLATTK-MSPIQVVQNTLRQSGPSGMYRGLSSMVYAAGPKAGVRFMGFEQVNSMLPNS-------LGPLKGFFAGLGAGVLEAVFVTTPQETIKVKLIDDQFRSEKPRFNGFFHGVRTIVAENGLSGCYRGLAPTIFKVATAQATRFGLFNLIPTEY---RSTPASSAAAGAFAGLASVLLFHPVDVVKSRMQGLDAGRYRGALDCLRQVAAEGGAAALYKGAGPRSARVMCEVAITMTLYGEVVRALNSVWHTD 284
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1142.1253.1 vs. uniprot
Match: A0A7S2I9W3_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2I9W3_9EUKA)

HSP 1 Score: 315 bits (808), Expect = 2.530e-98
Identity = 169/287 (58.89%), Postives = 204/287 (71.08%), Query Frame = 3 
Query:  144 KPKHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKEKGVTYGSVMRNTVKNQGALGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSNADGTDKYGLGAAKGFVAGLGAGATEATLVTTAQETIKIKLIDDQFSRAKPLYKNFFHGVKTIVAESGLAGIYKGWLPTVLKVSSAQATRFGVFQVLKSSSFYGKDSTAKSAAAGAAAGATSVFLFQGIDVVKSRMQGLQSAQYKSTLHCASEMLKNEGITSFYRGMAPRLTRVTCEVAITMSLYGEVVKFLNSVWET 1004
            KPKH GKA++AGGISG +EIC TYPLE+ KT  QLSKE G    +V+RNT+ N+G +GFYRGLSSMVYFA PKAAIRF +FE  S  L+ +DG   +G      F+AGL AG  EA  VTT QETIKIKLIDD F R  P +  FFHGV TI+ E G  GIY G  PT+LKV++AQ TRFGVF  +      G   TA   A+GA AG  SV LFQGIDV+KSRMQGL++ +YKS++ C  +++KNEG+ + Y+G+ PRL RV  EVAITM+LYGEVVK LN  W T
Sbjct:    6 KPKHAGKAIVAGGISGGIEICCTYPLEFTKTVAQLSKEGGGAM-AVVRNTMANEGPIGFYRGLSSMVYFATPKAAIRFSSFEAASAALTTSDGKPMFG--GVTAFLAGLAAGTAEAIFVTTPQETIKIKLIDDAFVRETPRFTGFFHGVSTIIKEEGFGGIYHGLSPTILKVATAQGTRFGVFNFIPPEYRKGPLLTA---ASGAFAGGVSVILFQGIDVIKSRMQGLEAHKYKSSMDCLRQLIKNEGVMALYKGVEPRLARVCAEVAITMTLYGEVVKLLNQYWIT 286
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1142.1253.1 vs. uniprot
Match: UPI000328A139 (tricarboxylate transport protein, mitochondrial n=1 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI000328A139)

HSP 1 Score: 258 bits (658), Expect = 4.150e-76
Identity = 150/305 (49.18%), Postives = 196/305 (64.26%), Query Frame = 3 
Query:  129 APAHLKPKHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKE------KGVTYGSVMRNTVKNQGALGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSNADGTDKYGLGAAKGFVAGLGAGATEATLVTTAQETIKIKLIDDQFSRAKPLYKNFFHGVKTIVAESGLAGIYKGWLPTVLKVSSAQATRFGVFQVLKSSSFYGKDSTAK------SAAAGAAAGATSVFLFQGIDVVKSRMQGLQSAQYKSTLHCASEMLKNEGITSFYRGMAPRLTRVTCEVAITMSLYGEVVKFLNSVWETD 1007
            AP   K  H GKA+LAGG++G +EICIT+P EYVKT  QL +       +G+     +R TV++ G LG YRGLSS++Y + PKAA+RFG FEF S  + +A G     L + +G V GLGAG  EA +V    ET+K+K I DQ S A P Y+ FFHGV+ IV E GL G Y+G   TVLK  S QA RF V   L++  +Y  D+  K      + A GA AGA SVF    +DVVK+RMQGL++ +Y++TL CA ++L+NEG+ +FY+G  PRL RV  +VAI   +Y EVVK LN VW+TD
Sbjct:   16 APGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERSNPPRYRGIV--DCVRQTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGTFEFLSNQMRDAQGK----LDSTRGLVCGLGAGVAEAVVVVCPMETVKVKFIHDQTS-ANPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTSLRN--WYRGDNPNKPMNPLVTGAFGAIAGAASVFGNTPLDVVKTRMQGLEAHKYRNTLDCALQILRNEGLKAFYKGTVPRLGRVCLDVAIVFVIYDEVVKLLNKVWKTD 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1142.1253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMB0_ECTSI5.190e-16788.14Similar to Solute carrier family 25 (Mitochondrial... [more]
W7TKG4_9STRA5.560e-11564.85Solute carrier family 25 (Mitochondrial carrier ci... [more]
A0A6U3C197_9EUKA4.830e-11463.05Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S1VIB4_9STRA5.590e-10962.28Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A0M0J9A5_9EUKA1.560e-10260.62Tricarboxylate transport mitochondrial n=1 Tax=Chr... [more]
A0A7S1B958_9STRA2.660e-10159.03Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S0END0_9EUKA7.480e-10059.86Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
A0A6V3A8C4_HETAK4.610e-9957.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2I9W3_9EUKA2.530e-9858.89Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
UPI000328A1394.150e-7649.18tricarboxylate transport protein, mitochondrial n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1142contigH-canaliculatus_F_contig1142:1359..7419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score496.1
Seed ortholog evalue1.1e-137
Seed eggNOG ortholog2880.D7FMB0
Preferred nameSLC25A1
KEGG koko:K04646,ko:K15100
KEGG TC2.A.29.7
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006842,GO:0006843,GO:0006855,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015137,GO:0015142,GO:0015238,GO:0015318,GO:0015711,GO:0015746,GO:0015849,GO:0015893,GO:0016006,GO:0016020,GO:0016021,GO:0016051,GO:0018130,GO:0019318,GO:0019319,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034220,GO:0034641,GO:0034654,GO:0035337,GO:0035383,GO:0035384,GO:0035674,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046364,GO:0046390,GO:0046483,GO:0046942,GO:0046943,GO:0046949,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0055085,GO:0055086,GO:0071616,GO:0071702,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098656,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1903825,GO:1905039,GO:1990542,GO:1990546
EggNOG free text desc.mitochondrial tricarboxylic acid transmembrane transport
EggNOG OGsKOG0756@1,KOG0756@2759
Ec32 ortholog descriptionMitochondrial substrate/solute carrier
Ec32 orthologEc-17_003620.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons5
Model size2303
Cds size888
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.6238008-UTR-H-canaliculatus_F_contig1142:1358..14801622928825.6238008-UTR-H-canaliculatus_F_contig1142:1358..1480Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1142 1359..1480 +
1696845579.6970367-UTR-H-canaliculatus_F_contig1142:1358..14801696845579.6970367-UTR-H-canaliculatus_F_contig1142:1358..1480Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1142 1359..1480 +
1622928825.7334561-UTR-H-canaliculatus_F_contig1142:6126..74191622928825.7334561-UTR-H-canaliculatus_F_contig1142:6126..7419Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1142 6127..7419 +
1696845579.7546635-UTR-H-canaliculatus_F_contig1142:6126..74191696845579.7546635-UTR-H-canaliculatus_F_contig1142:6126..7419Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1142 6127..7419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.6506417-CDS-H-canaliculatus_F_contig1142:1480..16121622928825.6506417-CDS-H-canaliculatus_F_contig1142:1480..1612Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1142 1481..1612 +
1696845579.7080326-CDS-H-canaliculatus_F_contig1142:1480..16121696845579.7080326-CDS-H-canaliculatus_F_contig1142:1480..1612Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1142 1481..1612 +
1622928825.6637368-CDS-H-canaliculatus_F_contig1142:3880..40721622928825.6637368-CDS-H-canaliculatus_F_contig1142:3880..4072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1142 3881..4072 +
1696845579.7170575-CDS-H-canaliculatus_F_contig1142:3880..40721696845579.7170575-CDS-H-canaliculatus_F_contig1142:3880..4072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1142 3881..4072 +
1622928825.6814363-CDS-H-canaliculatus_F_contig1142:4473..46491622928825.6814363-CDS-H-canaliculatus_F_contig1142:4473..4649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1142 4474..4649 +
1696845579.7266705-CDS-H-canaliculatus_F_contig1142:4473..46491696845579.7266705-CDS-H-canaliculatus_F_contig1142:4473..4649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1142 4474..4649 +
1622928825.7042391-CDS-H-canaliculatus_F_contig1142:5304..54731622928825.7042391-CDS-H-canaliculatus_F_contig1142:5304..5473Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1142 5305..5473 +
1696845579.7347202-CDS-H-canaliculatus_F_contig1142:5304..54731696845579.7347202-CDS-H-canaliculatus_F_contig1142:5304..5473Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1142 5305..5473 +
1622928825.7202814-CDS-H-canaliculatus_F_contig1142:5907..61261622928825.7202814-CDS-H-canaliculatus_F_contig1142:5907..6126Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1142 5908..6126 +
1696845579.7460508-CDS-H-canaliculatus_F_contig1142:5907..61261696845579.7460508-CDS-H-canaliculatus_F_contig1142:5907..6126Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1142 5908..6126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1142.1253.1prot_H-canaliculatus_F_contig1142.1253.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1142 1481..6126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1142.1253.1

>prot_H-canaliculatus_F_contig1142.1253.1 ID=prot_H-canaliculatus_F_contig1142.1253.1|Name=mRNA_H-canaliculatus_F_contig1142.1253.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=296bp
MGAPAHLKPKHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKEKGVTY
GSVMRNTVKNQGALGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSNADG
TDKYGLGAAKGFVAGLGAGATEATLVTTAQETIKIKLIDDQFSRAKPLYK
NFFHGVKTIVAESGLAGIYKGWLPTVLKVSSAQATRFGVFQVLKSSSFYG
KDSTAKSAAAGAAAGATSVFLFQGIDVVKSRMQGLQSAQYKSTLHCASEM
LKNEGITSFYRGMAPRLTRVTCEVAITMSLYGEVVKFLNSVWETD*
back to top

mRNA from alignment at H-canaliculatus_F_contig1142:1359..7419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1142.1253.1 ID=mRNA_H-canaliculatus_F_contig1142.1253.1|Name=mRNA_H-canaliculatus_F_contig1142.1253.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6061bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1142:1359..7419+ (Hapterophycus canaliculatus Oshoro5f female)
CTTCGAACCTGCGCAACGCACTCATCATATCACACCAGTGACGGAGGCAG
AAAGCGAAAGAGAGCAGGGCAGGGAGCTCAAAGGAATACTTAAGTCCACC
CTCTTCGGAAAGAAAAAGAAAGATGGGAGCTCCTGCGCACCTGAAGCCGA
AGCACAAGGGCAAAGCCGTGCTCGCCGGAGGTATCTCGGGTGTTGTGGAA
ATCTGCATTACGTACCCGCTCGAGTATGTCAAGACCACCCGCCAGCTTAG
CAAGGTGGGAATGATGACAGGAGGGAAAGAGAGAGAGGGAGAGAGAGGTT
ACGCGTGCGCCACTCTGTGCCGTGCCGGCACTGTCGTGCTCCCACACGCC
TGTTGTCCTCTTGCTGTGTGTGTGCGTTCGTGTGCTCTTGTTGTCGACTT
GGGGCAGGGAAAAACACACGTTGTGTGGTGAAAGTGTATGACGTGTGCTT
GTGTCATCGCATCTGCAAGAGATTTATGCGGCTAATCAGAGCTCTCCACA
CAGCAGTGAAGCAAATCTCGCGCCCTAGCATCTCTCGCGCCTAGCAATGG
CTGTGCATGGTGGGGCAAGCTATAACGCACTTTCGGAAACCTCTGCTGTC
GAGAGCTAGTGGCAGCGGCTCGGCAAACTACCCCTTGTGGTGCCTTCAAA
AACAAACACTCCGGCTCGCGTAGGTCACGTTTTGACTTTCCTTTCCGCCA
TTTTTTCGCACGATGAAATTGCGCATACGTACCTCCGAGAGGGTCCTGGA
ACCGCCTCTGTCTTCCGCCTTTCTCACCCTTCGACCTGCGGGTGGAAAAA
CGGCAGCGTCCCGGCCTCCGAAGCAAACCTCACCTCCATGGAGGAACACC
GCCTCCTAGAGCCACGGGTTTGTGTGATGGCGCCAGCTTTTCGATCGTTG
CCCCCAACGCGCATCGCCCCGAGAGAGCAATCCCCGCCGTCCTGGCGGGA
CTTCGTTGCTATCCCCCTGTCAGCTGTTGAACGCTACTCACGGTTGGAGT
GTTGTGGGATCAAATGCGAGAGTAGAATCAGGGGTCTTGCTGTAGATGGA
CTTGCTGTTGTCCAGCCGGTTTGATGGGTCGCTGGGGGTCTCAGCAGCGA
CCCAGGTACAGCGGTGATATACAAACGATATTATACTTTCGCAAGTACAA
CGTGCCGTTGTCCGCGGCTTTCCCTCCGACCGAGACTTGCCGAGAGTAAA
ATTCAAATTTCGTGTACGGTGCGTTGCGGCGGTTGCGAGTTACCCGAACT
TTGCGCGAAGTGCCAGGCTGGGTGTGTGCCGGCGATTATTTTGGGCCTGC
AAGCTGCTACTATGTGCACGTGCGATGGAGAAGAACGAAAGAAGTCGTGC
TTGAAACGACAAAAGGGTCAGGTTGCTAAGATTGTACCTGTAGTTTCCGC
CTGCTGGGCTTCGAAGCCTGGGTATGTTCATGCAGATACACTGCTGACTG
CTGCTGTACATCTGTACAGTATAGTATATTTGAAGTCTAAAGCGCTTCTT
CCCAGTACATATTCCGTTTCCGACGCCACCGAGTTTTTTTCAATTCTGAG
AGTTCGGAGTCCATGCAGATGTCATACACCTAAAACCCCAAAGCTGCGAT
ATGCCCCATCGCGATGTTCGAGCGTCTCAACGTCACGCCTTCGGCAACGG
AGATGGACACCCGAATTAGGGACGTGACCAAGACTCACATCCCTAACCGC
TGGCAGTTTGGCTTCTGGCCTGCGTTTTTCCTTTTCGCCGTGTGGAAAGT
AGACGGACATATTCCGCTACGCTCGCTCGCTCGGGTACCAGGAATCCAAA
TCTGCCGTCGGGCGTAACTTGCTCTCAACTCTCGAGCACGGTGATGTTGA
ACACGTTGTAGAATAATTGCCTCGCACACGTGCTCACCCACCCACTACCC
GCTTTGTGTGTTGTGTCATATGCGCACCATCTTCACCGCCGTCATCACTC
CTGCGTTCCTCTTGCGTGCATCGAGCAATACGTCTGAACCCCTGATGGGC
AACATAAGTCAGTTCGACGCAAAGTTCCGCCGGGAAAAGGAGAGTCTCCA
AGAACTCATGCGGCGGCACGAGGCCGACATATTTTGCAACCATGAGGTCC
TCCTATGGCTTCGCCAATGAGTTTGACTGATACAGGCTGCTGATCGTCTT
TTTCCTCGTTTCTCTTTTCTGTCGTGACGGTCCGCTGGCCATAGCATCCT
TCACCTCTCTCGACCCTCTCGACAAGCCACCCCACCCCGGCCGCCTTCCG
TGAAAACTACTTCCCCGAATGAACCAAAAGACGAGCGGTCGTGAGTCGTG
GAGGGATGTTTCCCCGCAGTTCGATAAACCAGCGAGTTTGATGGAGGGAC
GCTCAGAAGGTGTTTTGGCGTTGACCGACGGATTTGATCGGAAGTCGCCT
CCTTCCACTTGAAAAACACAAGAACACACGACGTGACGCAGGATGTGTTC
CTACGGTGTTTTCACGTCTTCTATAAAACAACATCAACGACTCACCGACG
CCGACGCCCACAACAACGACAGGAGAAAGGGGTGACCTATGGGTCCGTGA
TGAGAAATACGGTCAAGAACCAGGGTGCCCTCGGCTTCTACCGTGGGCTG
TCGTCGATGGTCTACTTCGCCGCGCCCAAGGCCGCCATCCGCTTCGGCGC
CTTCGAGTTCTGCTCCGGCCTGCTCAGCAACGCCGACGGAACCGACAAGT
ACGGCCTGGGAGCGGTGAGTGTCCGAAAGACATCGTGTTGCGGGATATGA
TGGCGGCGGCGGTGGACGCGATCGCGGCTGGACTCTCCTGTATCAATCGA
AAGGCATGCAGGATATGTGAGCTCTTGAAAAATGAACATGTGCGGCGCTT
TCGAAGGGGTGGAGAGTCTCCAGGTGGTAGTTCCGTTGGTAATGGTTCTC
CGAACGTTGCACCGCAGCCAGCTGCACCCTTTGCAGCGTCCAGCCCTGGT
TGCTCAACAAAGCTCGTCGTGTTTCCCCACGGCCACCGACGTGCCCCTCC
TCCACCAGGCAATGTCTATTATGTCTTGTTTGTTTCCACACATCCCTCGC
GTTTCCCCGCCCTTTTCACCTAATCGTGCCCGTACTTTCGTACCTTGGCG
TTTGAACGCGTGCAGGCCAAGGGCTTTGTGGCAGGTCTGGGGGCGGGCGC
AACAGAAGCGACTCTCGTCACCACGGCTCAGGAGACGATCAAGATCAAGT
TGATCGACGACCAGTTCAGCAGGGCGAAGCCTCTGTACAAGAACTTCTTC
CACGGGGTGAAGACCATCGTGGCGGAATCCGGCCTCGCGGGGTAAGAGGG
GGCTTGGATCATGTGCTTTCGATCGCTAGAAGAGTGTCTCGATCAGCATG
TGCACTGCAAGAAAGAGGAGTGCTCTGTCTACCTTTTGACGAGAGGTCCG
CCCCAAGAACTCTCTTGCAGTCGTGCTCTGCCTTCCATCTCCGTAGATGT
CCTTGTCCGCCGCGGCCGAAGTCATAACCCTGTCTGCTGTAAGGAAACTC
AGCACAAGCCGCGGTGTGATACTTCAGGGCTGCCCCTCTTCGAAGTAACT
CCTCCTTTTTTTGTTTTTTCGAGGCCCAGCTAGACACTTTCAGCCACTCG
CGCTGGGGTTGTAGCGTTGATAGCCATATTGAAAGTGAAACCCATGCAGT
GTAACTCCAACAGGGGCGTGTTGAATGACGAGAAGGATCCATACTGTTTG
ACCGCGAACTAGGCAATTCATCTCTTACAAGGAGCTGTAAGCGCCGTGCC
CCCTGCGCGACTGTCGCACCCTAAGGCTGTCGGAACCCTGCCCACAGTGT
TGCACAAAGCAGGTATTCCCCCGGCGTTCTCTAGCGTGGTACGGGACTGA
CACCATTCAGACCAGTGAATCTCACCACGGACCACACATGACGATACCCC
CCCCCCCCCTCTACCGGCCTCCACTCTTGTTTTCACGACTTTCCAGCATC
TACAAGGGGTGGTTGCCGACGGTGCTCAAGGTGTCCTCGGCGCAAGCTAC
TCGTTTCGGCGTCTTCCAGGTGCTCAAGTCCTCGTCGTTCTACGGAAAGG
ACTCGACCGCCAAGTCGGCTGCGGCTGGAGCTGCGGCTGGTGCCACATCG
GTGTTCCTCTTCCAGGTGAGAAGTTTGCCTCCGTTCGCACGTTGTTGGGG
CAATTTTGTCGCCAGCTGCGACTCCAAACTCCATAACGAAACAGATATTT
CAAGGGCGAGGGAAGAAACAGATATTTCAAGATTCGGATTTTCTTGGTCG
TACGCTGTGAAGCTGTGTGAAGGTGGGGTTCGGATGCAGTGATTGAGGAC
GAGCATATAGTGAAGACCATGGCGAAGCAAATCCGGTGCCTCTCGTGACG
GGCACGTGTGCCCACAGGTTGCCGCACAGATTTTGAATGAAAGAAAACGC
GCTCACTTGGACCAGTGCAGGCAGGCATCACGTGTTGCGCGGGGGCGACA
AACCCTTTTCGGGGGTATCGTTTTTCCATCCCGGCCATCCCCGTCACCTG
TCCCGCATACTTTGTTAACCCAGCCCGACCTATGTCCACCGGAACACAGG
GTATCGACGTGGTGAAGAGCCGGATGCAAGGCCTCCAGTCCGCACAGTAC
AAGTCCACCCTCCACTGCGCTTCTGAGATGCTCAAGAACGAGGGCATCAC
TTCCTTCTACCGCGGAATGGCCCCGCGACTCACGCGAGTGACGTGCGAGG
TGGCCATCACGATGTCGCTGTACGGAGAGGTCGTGAAGTTCCTCAACAGC
GTGTGGGAAACCGACTAAGTGGATGTAGAGACAGAACTTCGTTCTCGTGC
GTCTCTTCTGAATGCAATCATCAGTCGGTGCGCGAGCAAGCCCATCGAAG
GATTGTCATGAAAGAGGTACTGCTGTAGGCGAATTCTTGAAGAGTGGCGG
AAGAAAGGCCAAAACTGCGAAGGCAATGGTAGTGGCCGGGGGTATGTGTG
GGACGCTCGTCCGCCAATTTTGAACCAGCCTGCGAAGCATGCCCAGGACC
ATCACAGTAGCTCGTTTCGATGCCAACGGTCCCTAGTTCTGCCTCTTTTT
TTTGCTGCGTGGGGTGTTTCGATCACGATACCCGGCCGGGGGTTCAAGCC
TGGTTTGGCTGGTCTGTGGCTTTCGAGTTCACATCTGGCCGTTCCATCCA
CACAAACACCCTTCCTGTGCGGCGAAGAAGTCAAGAGCCGTGTCAGTCTG
TTTCATCTGGGTGTTTCCCAGAGTGGAGCAAAAAGTTTTGGTGGTCTGCA
AGGACCAGCAGGTGGCGGGGAGGTCAGGTCCGTTGTGTCTGTTGTTGGGT
TTCCGCCACCTGGGGTGATGTTCTTTGCCCGGTGTTGCCTCCTCTTTCTC
TTACAAACGGATGGGGTAAGCAGTCAAAAGAGCGAAGAACATATGCCGTT
TTGTCTCGTGCAAACCCACGCACCGGAGCGGCGTTGTGGTTTGTAGTTTT
ACACAAGAGTCGAATCCAACCCCTCTTCTTGTAGGAGTCCCAAGATTAGC
ATTTTTCGTATTTTCTCATCGTACCCGCGTTGGTTATCCGACTCCAGAAG
AGGCTGTCGTGTTTTTTCGTGAGGAGATCAGCACCGTGTGGAGGGGAAAG
CCAAAAGGCGGAAACGTGTCCGTTTCTGGTGTGTAGAGCGGTCGGCTGCT
CGTTGTGCTCCGAACGTCGGTCGTGGAGGTGATGAGTCTTAATGAAGCAT
TGTGCCTTTTGTCCCTGCTTTTTGTCCAGGTATCGTCGAAGGTGGTCCGT
GTAGCGTGTGCGACAGCGTAGCGAAGCCGACTTTCCCAGTCGGTCTGCTT
GCCGTCTGAGTATTTTAGGGGCAGGAAACTGCAGCACTACAAACCAGGTA
GTATCTTTCTCGGGGGAGTCATTTCTTTTAGACGCAATTGCTCGTCAATT
TAGCTGGCAGGCTGGCAGCGGCGAAGTTGGGAACATACACACATTTTTTT
CAACCGCGGGTACTTCCTTGATATCCCACTTCGATGATGCAAGCCCCCCC
ACGAAAAGAACGATGGCCGGTTTCTGCACCCACCCTCTCAACACTCCATT
TCCATTTCTCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1142:1359..7419+

>mRNA_H-canaliculatus_F_contig1142.1253.1 ID=mRNA_H-canaliculatus_F_contig1142.1253.1|Name=mRNA_H-canaliculatus_F_contig1142.1253.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1776bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1142:1359..7419+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGCTCCTGCGCACCTGAAGCCGAAGCACAAGGGCAAAGCCGTGCT
CGCCGGAGGTATCTCGGGTGTTGTGGAAATCTGCATTACGTACCCGCTCG
AGTATGTCAAGACCACCCGCCAGCTTAGCAAGATGGGAGCTCCTGCGCAC
CTGAAGCCGAAGCACAAGGGCAAAGCCGTGCTCGCCGGAGGTATCTCGGG
TGTTGTGGAAATCTGCATTACGTACCCGCTCGAGTATGTCAAGACCACCC
GCCAGCTTAGCAAGGAGAAAGGGGTGACCTATGGGTCCGTGATGAGAAAT
ACGGTCAAGAACCAGGGTGCCCTCGGCTTCTACCGTGGGCTGTCGTCGAT
GGTCTACTTCGCCGCGCCCAAGGCCGCCATCCGCTTCGGCGCCTTCGAGT
TCTGCTCCGGCCTGCTCAGCAACGCCGACGGAACCGACAAGTACGGCCTG
GGAGCGGAGAAAGGGGTGACCTATGGGTCCGTGATGAGAAATACGGTCAA
GAACCAGGGTGCCCTCGGCTTCTACCGTGGGCTGTCGTCGATGGTCTACT
TCGCCGCGCCCAAGGCCGCCATCCGCTTCGGCGCCTTCGAGTTCTGCTCC
GGCCTGCTCAGCAACGCCGACGGAACCGACAAGTACGGCCTGGGAGCGGC
CAAGGGCTTTGTGGCAGGTCTGGGGGCGGGCGCAACAGAAGCGACTCTCG
TCACCACGGCTCAGGAGACGATCAAGATCAAGTTGATCGACGACCAGTTC
AGCAGGGCGAAGCCTCTGTACAAGAACTTCTTCCACGGGGTGAAGACCAT
CGTGGCGGAATCCGGCCTCGCGGGGCCAAGGGCTTTGTGGCAGGTCTGGG
GGCGGGCGCAACAGAAGCGACTCTCGTCACCACGGCTCAGGAGACGATCA
AGATCAAGTTGATCGACGACCAGTTCAGCAGGGCGAAGCCTCTGTACAAG
AACTTCTTCCACGGGGTGAAGACCATCGTGGCGGAATCCGGCCTCGCGGG
CATCTACAAGGGGTGGTTGCCGACGGTGCTCAAGGTGTCCTCGGCGCAAG
CTACTCGTTTCGGCGTCTTCCAGGTGCTCAAGTCCTCGTCGTTCTACGGA
AAGGACTCGACCGCCAAGTCGGCTGCGGCTGGAGCTGCGGCTGGTGCCAC
ATCGGTGTTCCTCTTCCAGCATCTACAAGGGGTGGTTGCCGACGGTGCTC
AAGGTGTCCTCGGCGCAAGCTACTCGTTTCGGCGTCTTCCAGGTGCTCAA
GTCCTCGTCGTTCTACGGAAAGGACTCGACCGCCAAGTCGGCTGCGGCTG
GAGCTGCGGCTGGTGCCACATCGGTGTTCCTCTTCCAGGGTATCGACGTG
GTGAAGAGCCGGATGCAAGGCCTCCAGTCCGCACAGTACAAGTCCACCCT
CCACTGCGCTTCTGAGATGCTCAAGAACGAGGGCATCACTTCCTTCTACC
GCGGAATGGCCCCGCGACTCACGCGAGTGACGTGCGAGGTGGCCATCACG
ATGTCGCTGTACGGAGAGGTCGTGAAGTTCCTCAACAGCGTGTGGGAAAC
CGACTAAGGTATCGACGTGGTGAAGAGCCGGATGCAAGGCCTCCAGTCCG
CACAGTACAAGTCCACCCTCCACTGCGCTTCTGAGATGCTCAAGAACGAG
GGCATCACTTCCTTCTACCGCGGAATGGCCCCGCGACTCACGCGAGTGAC
GTGCGAGGTGGCCATCACGATGTCGCTGTACGGAGAGGTCGTGAAGTTCC
TCAACAGCGTGTGGGAAACCGACTAA
back to top