mRNA_H-canaliculatus_F_contig11415.1251.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11415.1251.1
Unique NamemRNA_H-canaliculatus_F_contig11415.1251.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11415.1251.1 vs. uniprot
Match: A0A6H5L2A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A9_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 8.910e-115
Identity = 251/369 (68.02%), Postives = 274/369 (74.25%), Query Frame = 1 
Query:    1 MIPRRKELIVGALTLLSCSCPTLAFLPSTPHTGAPAARAAATGARDRQATVSVTERSARSHPRRCRVRTRVAA-----------RGDEQEEGSATFRPAATATRRSRLSGSDRRSKVRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELPLTLDMALQEGVNRALRGDAGVLRQVLAPGVEWRGPLGNNAGLLKVEGELRGLGSLLTDPRMAVFESKDGGRRLEWIASGTWPLPWLPRFIVKGASEVETGADGKVVKITDTWEGNPISLALEHLVPGFWDIWHQLGSPPAEKAPSRVVKRTLGYAIREYAPRLVTQPSLIDYSNSREVRGA 1074
            M+PRR+     ALTL+SCSCPTLAFLPSTPHT A         AR      +  ++ ARS PR+C+ RTR  A           RGD +E      R   T  R +  +G                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELPLTLD AL+EGVNRA+RGD GVLRQVLAPGVEWRGPLGNNAGL KVE ELRGLGSLL+ PRM+VF SKDG +RLEWIASGTWPLPWLPRFIVKGAS+++TG DGKVVKITDTWEGNP++L L+HLVPGFWDIWHQLGSPPAEK P RVVKR LGY IREYAPRL TQPSLIDYSNSRE+R A
Sbjct:    1 MVPRRRRAFTAALTLVSCSCPTLAFLPSTPHTAAXXXXXX--XARRAGNIATAADQVARSEPRQCQSRTRALAXXXXXXXXXXXRGDLEEGKRYNDR---TGRRSTATTGXX------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELPLTLDKALEEGVNRAMRGDPGVLRQVLAPGVEWRGPLGNNAGLAKVEEELRGLGSLLSAPRMSVFASKDGAKRLEWIASGTWPLPWLPRFIVKGASKLQTGPDGKVVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRLATQPSLIDYSNSREIRKA 340
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BLAST of mRNA_H-canaliculatus_F_contig11415.1251.1 vs. uniprot
Match: D7FR29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR29_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 8.030e-96
Identity = 139/167 (83.23%), Postives = 151/167 (90.42%), Query Frame = 1 
Query:  574 LRGDAGVLRQVLAPGVEWRGPLGNNAGLLKVEGELRGLGSLLTDPRMAVFESKDGGRRLEWIASGTWPLPWLPRFIVKGASEVETGADGKVVKITDTWEGNPISLALEHLVPGFWDIWHQLGSPPAEKAPSRVVKRTLGYAIREYAPRLVTQPSLIDYSNSREVRGA 1074
            +RGD GVLRQVLAPGVEWRGPLGNNAGL KVE ELRGLGSLL  PR++VF SKDG +RLEW+ASGTWPLPWLPRFIVKGAS ++TG DGKVVKITDTWEGNP++L L+HLVPGFWDIWHQLGSPPAEK P RVVKR LGY IREYAPR+ TQPSLIDYSNSRE+R A
Sbjct:    1 MRGDPGVLRQVLAPGVEWRGPLGNNAGLAKVEEELRGLGSLLNAPRLSVFASKDGAKRLEWVASGTWPLPWLPRFIVKGASTLQTGPDGKVVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRMATQPSLIDYSNSREIRKA 167
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BLAST of mRNA_H-canaliculatus_F_contig11415.1251.1 vs. uniprot
Match: A0A835YSS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS2_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.760e-51
Identity = 88/188 (46.81%), Postives = 125/188 (66.49%), Query Frame = 1 
Query:  523 ELPLTLDMALQEGVNRALRGDAGVLRQVLAPGVEWRGPLGNNAGLLKVEGELRGLGSLLTDPRMAVFESK---DGGRRLEWIASGTWPLPWLPRFIVKGASEVET-GADGKVVKITDTWEGNPISLALEHLVPGFWDIWHQLGSPPAEKAPSRVVKRTLGYAIREYAPRLVTQPSLIDYSNSREVRGA 1074
            E PL L  AL  G+NRA+RGD+ VLRQVL+    W+GP+ +     K+E +LR +GS L+DPR  V  +    D    LEW+AS TWPLPW PR +++G + V    A G+++ + DTWE  P+   + HL+PGFWDIW+Q  SP AE+ P +V++R  GY + ++APRLV +P+L+D +NSR+ R A
Sbjct:   21 ETPLELGPALTLGLNRAIRGDSSVLRQVLSDNCSWKGPVASYDSRNKIEEDLRNVGSFLSDPRFTVASTTPTGDATYSLEWLASATWPLPWTPRIVIQGRTLVRLDSAGGRIISMEDTWEEAPVQALIRHLLPGFWDIWNQFCSPIAERYPHKVLRRGRGYEVWQFAPRLVLRPTLVDRTNSRQARMA 208
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BLAST of mRNA_H-canaliculatus_F_contig11415.1251.1 vs. uniprot
Match: A0A8J5XYQ7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYQ7_DIALT)

HSP 1 Score: 88.6 bits (218), Expect = 8.340e-16
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 1 
Query:  688 GSLLTDPRMAVFESKDGGR---RLEWIASGTWPLPWLPRFIVKGAS--EVETGADGKV--VKITDTWEGNPISLALEHLVPGFWDIWHQLGSPPAEKAPSRVVKRTLGYAIREYAPRLVTQPSL 1038
            G  L DP + V      G    R+EW+ASGTWPLPW PR +  G+S  E+ET   G V  V++TDT + +P+ + +  L+P + D++    SPPAE  P RVV+    Y +R   P +  + +L
Sbjct:  106 GKFLVDPMLEVLSVSVTGASSARVEWLASGTWPLPWRPRALALGSSALELETLPTGAVHVVRVTDTLQTSPVDVLVSQLLPNWEDVYSLYNSPPAELRPYRVVRAARTYELRWMPPGIALRCAL 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11415.1251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L2A9_9PHAE8.910e-11568.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR29_ECTSI8.030e-9683.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSS2_9STRA1.760e-5146.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J5XYQ7_DIALT8.340e-1638.71Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11415contigH-canaliculatus_F_contig11415:1663..4048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.9
Seed ortholog evalue3.2e-78
Seed eggNOG ortholog2880.D7FR29
EggNOG OGs2C5V8@1,2SB4P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_003730.1
Exons2
Model size1074
Cds size1074
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.4905083-CDS-H-canaliculatus_F_contig11415:1662..25051622928825.4905083-CDS-H-canaliculatus_F_contig11415:1662..2505Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11415 1663..2505 +
1696845579.647593-CDS-H-canaliculatus_F_contig11415:1662..25051696845579.647593-CDS-H-canaliculatus_F_contig11415:1662..2505Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11415 1663..2505 +
1622928825.5091004-CDS-H-canaliculatus_F_contig11415:3817..40481622928825.5091004-CDS-H-canaliculatus_F_contig11415:3817..4048Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11415 3818..4048 +
1696845579.6580179-CDS-H-canaliculatus_F_contig11415:3817..40481696845579.6580179-CDS-H-canaliculatus_F_contig11415:3817..4048Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11415 3818..4048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11415.1251.1prot_H-canaliculatus_F_contig11415.1251.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11415 1663..4048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11415.1251.1

>prot_H-canaliculatus_F_contig11415.1251.1 ID=prot_H-canaliculatus_F_contig11415.1251.1|Name=mRNA_H-canaliculatus_F_contig11415.1251.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=358bp
MIPRRKELIVGALTLLSCSCPTLAFLPSTPHTGAPAARAAATGARDRQAT
VSVTERSARSHPRRCRVRTRVAARGDEQEEGSATFRPAATATRRSRLSGS
DRRSKVRMMMAAAAPAAGGGAEEGVMGSTASAAAAAANTPVAASGGGVTT
PVAAPSETINNNRNSNDDDDDDDDELPLTLDMALQEGVNRALRGDAGVLR
QVLAPGVEWRGPLGNNAGLLKVEGELRGLGSLLTDPRMAVFESKDGGRRL
EWIASGTWPLPWLPRFIVKGASEVETGADGKVVKITDTWEGNPISLALEH
LVPGFWDIWHQLGSPPAEKAPSRVVKRTLGYAIREYAPRLVTQPSLIDYS
NSREVRGA
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mRNA from alignment at H-canaliculatus_F_contig11415:1663..4048+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11415.1251.1 ID=mRNA_H-canaliculatus_F_contig11415.1251.1|Name=mRNA_H-canaliculatus_F_contig11415.1251.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2386bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11415:1663..4048+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATTCCGCGGAGAAAAGAGCTCATCGTTGGAGCTTTGACTCTTCTGTC
ATGCTCCTGCCCGACGCTTGCGTTTCTGCCTTCAACACCGCACACCGGTG
CACCAGCAGCAAGGGCCGCTGCGACAGGTGCCCGCGACCGACAAGCCACT
GTTTCGGTAACTGAACGAAGCGCCCGGTCCCATCCGCGGCGGTGTCGGGT
GCGAACACGTGTTGCAGCGCGAGGAGATGAACAAGAGGAGGGTAGCGCTA
CTTTCCGCCCAGCGGCAACAGCAACAAGGCGCAGTCGGCTCAGCGGTAGC
GACCGCAGGAGCAAGGTGCGCATGATGATGGCGGCAGCAGCACCAGCGGC
AGGTGGCGGGGCGGAGGAAGGTGTCATGGGCTCCACCGCGTCGGCGGCGG
CGGCAGCAGCAAACACGCCCGTTGCCGCGAGCGGTGGTGGAGTCACGACA
CCGGTGGCTGCTCCATCAGAAACCATCAACAACAACAGAAACAGCAACGA
CGACGACGACGACGACGACGACGAGCTACCGCTGACGCTCGACATGGCCC
TCCAGGAGGGGGTCAACCGCGCCCTCCGCGGAGACGCCGGCGTCCTCCGG
CAGGTGCTGGCCCCCGGGGTCGAGTGGCGGGGGCCCCTGGGCAACAATGC
CGGCCTCTTGAAGGTCGAGGGGGAACTGCGGGGCCTGGGCAGCCTGCTCA
CCGACCCAAGGATGGCGGTGTTCGAGTCTAAGGATGGGGGTCGGAGGCTG
GAGTGGATCGCAAGCGGGACCTGGCCGCTGCCGTGGCTGCCGCGTTTCAT
CGTGAAGGGGGCGTCGGAGGTCGAGACGGGTGCCGACGGGAAGGTAAGCG
GGGGAAGGGGGTCGCGGTCGTCTGTCGCATTCTGCTCATGTCGTGCCACC
GCAACCGTCCCCACTGCTGCTGCCAGCTTTAGGCAAATGTGTGCCCTGCA
GCAGTATTAGTCGACGTCCCGTGTGTTCGTTTTGTGTTTGGTTGCCGCGT
GCGGGTGGTTGAATGTGCGGCGGGCTGCTGTTATGTAGCGCTTGGCGTCG
TCAACACGCCGGGAACTTGCGCCGCGTCGTCCTCTTAGACAGCGGCCTCA
CTGCCTCCGACCATCACGAAGTCGGGAGCGCGTGATGTCACCCGACCAGT
CTGCTTGAGTTGTGTTCTGCGGGAATCCCCACCCTTGGCCCCTTCCGACC
CCCTCCATCGGTTAGAATATGCGTCCTCGCTCTCCCGTGCAACCCTGCGT
CGTACCATGTTGCCACCCCCTTCTTCTTGTCCATGCTTCCCCGATCCCAT
TTTTGAAGCGGACAATGCGGTAATGTGCATCCGGCGTCCATCCTAGTTCG
GAACCGCACGTAGTGGTTTCCGAGACCCGACCGTGGCAGGCCGTCTTAAA
CGGCTGCAAACACACTCAGAAATGGCACTCGAAGATTGAATCCATGCTGT
TCGGGGCGGCCCACTCCTGTTGGTACTGTTTCCGTGGTGGTGGTATGGGC
CGTCGTCGGTGCCGTCAGTCTTGCCGGCGCTGATGGCGACGTCGTCGTCC
TGTTCGGGGGCTCTGCCGTGCATATGACAGTTGTTCTTCGCCGACGTCGT
TCACGGCATGGCGAGCCACACCTCCAGACTTCGCACATGCCAATGGCATG
GATGGGACATAGATCTTTCAGTTTCCGTAGATACACGGCTGCTCGCTGCT
GCACACCGCAATCATTCGCCTGTGTCTCTGGGGTTCACGACGCAAGGCTT
GCTTCCCAGGATCGAGTGTGATCAAAACGACAACGCTCTGGTGTGGGACG
GACCTCGGGGCGTCGTCCGAGAGCAGTGCCTCCGCAATTTTTACGCACGG
CGCCTTCTTTCTTCTCACGCGCCCTCGAACTCTCGTTAAAAAGAGATCTA
CAACCAGGTCCAAGCCGACCGCCGAAACTGTGCCGTTCAAGTCTTTTCCC
ACGTTTCGCGCAAGACTTGGTCGACTTCCGCCCCCCCTGCGGTTCAAGTC
AGAAGAACAATAGTGAGCCACTGCTGTAGTTTGCAGCGGCAACCATGAGG
CACGGGAAGACATAAGAACAGCAGTGGGCACGACGCCGCTGTCGCCTTTG
CTCCCAAATCTCCAAGGACCTTCGCTTCACAACACGCACGTGAAAAACCG
AACAGGTGGTCAAGATCACGGACACGTGGGAGGGCAATCCGATCAGCCTC
GCCCTGGAGCACCTCGTCCCTGGGTTCTGGGACATCTGGCACCAGCTGGG
CTCTCCCCCCGCGGAGAAGGCGCCGTCCAGGGTGGTCAAGAGGACCCTGG
GATACGCCATCCGCGAGTACGCCCCACGCCTCGTGACGCAGCCGTCGCTG
ATCGACTACTCCAACTCGCGAGAGGTGAGAGGAGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11415:1663..4048+

>mRNA_H-canaliculatus_F_contig11415.1251.1 ID=mRNA_H-canaliculatus_F_contig11415.1251.1|Name=mRNA_H-canaliculatus_F_contig11415.1251.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2148bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11415:1663..4048+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATTCCGCGGAGAAAAGAGCTCATCGTTGGAGCTTTGACTCTTCTGTC
ATGCTCCTGCCCGACGCTTGCGTTTCTGCCTTCAACACCGCACACCGGTG
CACCAGCAGCAAGGGCCGCTGCGACAGGTGCCCGCGACCGACAAGCCACT
GTTTCGGTAACTGAACGAAGCGCCCGGTCCCATCCGCGGCGGTGTCGGGT
GCGAACACGTGTTGCAGCGCGAGGAGATGAACAAGAGGAGGGTAGCGCTA
CTTTCCGCCCAGCGGCAACAGCAACAAGGCGCAGTCGGCTCAGCGGTAGC
GACCGCAGGAGCAAGGTGCGCATGATGATGGCGGCAGCAGCACCAGCGGC
AGGTGGCGGGGCGGAGGAAGGTGTCATGGGCTCCACCGCGTCGGCGGCGG
CGGCAGCAGCAAACACGCCCGTTGCCGCGAGCGGTGGTGGAGTCACGACA
CCGGTGGCTGCTCCATCAGAAACCATCAACAACAACAGAAACAGCAACGA
CGACGACGACGACGACGACGACGAGCTACCGCTGACGCTCGACATGGCCC
TCCAGGAGGGGGTCAACCGCGCCCTCCGCGGAGACGCCGGCGTCCTCCGG
CAGGTGCTGGCCCCCGGGGTCGAGTGGCGGGGGCCCCTGGGCAACAATGC
CGGCCTCTTGAAGGTCGAGGGGGAACTGCGGGGCCTGGGCAGCCTGCTCA
CCGACCCAAGGATGGCGGTGTTCGAGTCTAAGGATGGGGGTCGGAGGCTG
GAGTGGATCGCAAGCGGGACCTGGCCGCTGCCGTGGCTGCCGCGTTTCAT
CGTGAAGGGGGCGTCGGAGGTCGAGACGGGTGCCGACGGGAAGATGATTC
CGCGGAGAAAAGAGCTCATCGTTGGAGCTTTGACTCTTCTGTCATGCTCC
TGCCCGACGCTTGCGTTTCTGCCTTCAACACCGCACACCGGTGCACCAGC
AGCAAGGGCCGCTGCGACAGGTGCCCGCGACCGACAAGCCACTGTTTCGG
TAACTGAACGAAGCGCCCGGTCCCATCCGCGGCGGTGTCGGGTGCGAACA
CGTGTTGCAGCGCGAGGAGATGAACAAGAGGAGGGTAGCGCTACTTTCCG
CCCAGCGGCAACAGCAACAAGGCGCAGTCGGCTCAGCGGTAGCGACCGCA
GGAGCAAGGTGCGCATGATGATGGCGGCAGCAGCACCAGCGGCAGGTGGC
GGGGCGGAGGAAGGTGTCATGGGCTCCACCGCGTCGGCGGCGGCGGCAGC
AGCAAACACGCCCGTTGCCGCGAGCGGTGGTGGAGTCACGACACCGGTGG
CTGCTCCATCAGAAACCATCAACAACAACAGAAACAGCAACGACGACGAC
GACGACGACGACGACGAGCTACCGCTGACGCTCGACATGGCCCTCCAGGA
GGGGGTCAACCGCGCCCTCCGCGGAGACGCCGGCGTCCTCCGGCAGGTGC
TGGCCCCCGGGGTCGAGTGGCGGGGGCCCCTGGGCAACAATGCCGGCCTC
TTGAAGGTCGAGGGGGAACTGCGGGGCCTGGGCAGCCTGCTCACCGACCC
AAGGATGGCGGTGTTCGAGTCTAAGGATGGGGGTCGGAGGCTGGAGTGGA
TCGCAAGCGGGACCTGGCCGCTGCCGTGGCTGCCGCGTTTCATCGTGAAG
GGGGCGTCGGAGGTCGAGACGGGTGCCGACGGGAAGGTGGTCAAGATCAC
GGACACGTGGGAGGGCAATCCGATCAGCCTCGCCCTGGAGCACCTCGTCC
CTGGGTTCTGGGACATCTGGCACCAGCTGGGCTCTCCCCCCGCGGAGAAG
GCGCCGTCCAGGGTGGTCAAGAGGACCCTGGGATACGCCATCCGCGAGTA
CGCCCCACGCCTCGTGACGCAGCCGTCGCTGATCGACTACTCCAACTCGC
GAGAGGTGAGAGGAGCCGTGGTCAAGATCACGGACACGTGGGAGGGCAAT
CCGATCAGCCTCGCCCTGGAGCACCTCGTCCCTGGGTTCTGGGACATCTG
GCACCAGCTGGGCTCTCCCCCCGCGGAGAAGGCGCCGTCCAGGGTGGTCA
AGAGGACCCTGGGATACGCCATCCGCGAGTACGCCCCACGCCTCGTGACG
CAGCCGTCGCTGATCGACTACTCCAACTCGCGAGAGGTGAGAGGAGCC
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