mRNA_H-canaliculatus_F_contig11413.1250.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11413.1250.1
Unique NamemRNA_H-canaliculatus_F_contig11413.1250.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11413.1250.1 vs. uniprot
Match: A0A6H5L557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L557_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.210e-32
Identity = 73/93 (78.49%), Postives = 76/93 (81.72%), Query Frame = 2 
Query:  221 AAGGK-NARLLMGLPYVVEGLLAALLDLVNTASEEGRRQLPAYRKGLVPTLTELLQDTSNDPFVLQAARTLVARVSAREGFVVHGIDGSMDVA 496
            AAGG  NARLL GLPYVVEGLLAALL LV+  SEEGR QL AYRKGLVPTLTELLQDTS DPFVL+AARTL+ RVSARE  V  G   SMDVA
Sbjct:  845 AAGGSGNARLLRGLPYVVEGLLAALLVLVDAGSEEGRSQLAAYRKGLVPTLTELLQDTSRDPFVLRAARTLIGRVSARESLVTSG---SMDVA 934
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11413.1250.1 vs. uniprot
Match: D7FNG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG5_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 2.030e-30
Identity = 68/87 (78.16%), Postives = 72/87 (82.76%), Query Frame = 2 
Query:  236 NARLLMGLPYVVEGLLAALLDLVNTASEEGRRQLPAYRKGLVPTLTELLQDTSNDPFVLQAARTLVARVSAREGFVVHGIDGSMDVA 496
            NARLL GLPYVVEGLLAALL LV+  SEEGR QL AYRKGLVPTLTELLQDTS DPFVL++ARTL+ RVSARE  V  G   SMDVA
Sbjct:  664 NARLLRGLPYVVEGLLAALLVLVDAGSEEGRSQLAAYRKGLVPTLTELLQDTSRDPFVLRSARTLIGRVSARESLVASG---SMDVA 747
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11413.1250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L557_9PHAE7.210e-3278.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNG5_ECTSI2.030e-3078.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11413contigH-canaliculatus_F_contig11413:11..1129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size499
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11413.1250.1prot_H-canaliculatus_F_contig11413.1250.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11413 189..1129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.415606-UTR-H-canaliculatus_F_contig11413:10..1881622928825.415606-UTR-H-canaliculatus_F_contig11413:10..188Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11413 11..188 +
1696845579.6190429-UTR-H-canaliculatus_F_contig11413:10..1881696845579.6190429-UTR-H-canaliculatus_F_contig11413:10..188Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11413 11..188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.4282959-CDS-H-canaliculatus_F_contig11413:188..3591622928825.4282959-CDS-H-canaliculatus_F_contig11413:188..359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11413 189..359 +
1696845579.6277444-CDS-H-canaliculatus_F_contig11413:188..3591696845579.6277444-CDS-H-canaliculatus_F_contig11413:188..359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11413 189..359 +
1622928825.4413917-CDS-H-canaliculatus_F_contig11413:979..11291622928825.4413917-CDS-H-canaliculatus_F_contig11413:979..1129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11413 980..1129 +
1696845579.6365898-CDS-H-canaliculatus_F_contig11413:979..11291696845579.6365898-CDS-H-canaliculatus_F_contig11413:979..1129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11413 980..1129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11413.1250.1

>prot_H-canaliculatus_F_contig11413.1250.1 ID=prot_H-canaliculatus_F_contig11413.1250.1|Name=mRNA_H-canaliculatus_F_contig11413.1250.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MDRCTHAPLPARTRAAGGKNARLLMGLPYVVEGLLAALLDLVNTASEEGR
RQLPAYRKGLVPTLTELLQDTSNDPFVLQAARTLVARVSAREGFVVHGID
GSMDVA*
back to top

mRNA from alignment at H-canaliculatus_F_contig11413:11..1129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11413.1250.1 ID=mRNA_H-canaliculatus_F_contig11413.1250.1|Name=mRNA_H-canaliculatus_F_contig11413.1250.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11413:11..1129+ (Hapterophycus canaliculatus Oshoro5f female)
CGAGTAGGGAGCACGTTTCCACGAAACCTACCGCCATTTTCTCGCTGCCA
CCCGCGGTATCTCGTGTGTTTGATGGTCGCGAACAAGCATTCATCCGACC
TTGTTTACCTTCGCGTCAGCTCACTCTCCTTTCTTACCCCCGACGATTCG
ACGATTCGACCGGCGTGACTGGGTGCAAATGGATCGATGCACGCACGCAC
CGTTGCCTGCACGAACCAGGGCCGCTGGCGGGAAGAACGCGCGGCTCCTG
ATGGGCCTCCCCTACGTGGTAGAAGGCCTCCTCGCCGCGCTGCTTGACCT
GGTCAACACGGCTTCCGAGGAAGGGAGAAGGCAGCTGCCGGCGTACAGGG
TGAGTCGTCGCCCGAGCCGTTTCGACCGAATGAAGAGATTGATAGCCCTG
CGACGTGCTCTGGGCCTATGAAGGAGAATGAGGGGGGGACGAAAATGCAC
GAACCCCGTACATTTGAGTTGCGCGTGTTTGGATTCTTAACCTTCTTTCG
TTTTGCCTTGTGGTTACCGCCGTGTGTCTTGCAAGCGATGTCCCTCTGTG
GCGTGGGCGTAAGAGAGTGAGTGCCCAAGTGCCGCAGAGAATCGAGCATT
GCCGCTTGCCCTGGGAGGCAATAGATTGCAGCCGCTCCTCGAAACGCCCT
CTCCCTGTAACTCACGGCCTCTCTATCCCTCTTGCTTGTCTGCTTCTGTC
TCTGTCTCTCCTTCTCTCTGTCCCTCTCTGTCTCTTCTTATCTCCCGCTC
TCCCGCCTTCTCTTTCTGTCGCTCTCCCGCCATCCCTTCCTCATGCCCCC
GGTCCCCGTCCCCGTCCCCGTCTCCGCTCTATCTTCCCGTCTCGCCCTTT
GGCGCGATTTTGATGTCGCCACCGCCGATGCGACAAAACGAACCTCGCCC
GAACCGGAACCGAACCATCGGCGCGAATGAATGGACGAACTTAAAAATGC
CCAACCAAAACGGGAGCAGAAGGGTCTCGTGCCCACCCTGACGGAGCTGT
TGCAGGACACCTCCAACGACCCCTTCGTGCTGCAGGCGGCGCGCACCTTG
GTGGCCCGGGTGTCCGCTCGGGAAGGGTTCGTCGTTCATGGCATCGACGG
CTCCATGGACGTGGCTTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11413:11..1129+

>mRNA_H-canaliculatus_F_contig11413.1250.1 ID=mRNA_H-canaliculatus_F_contig11413.1250.1|Name=mRNA_H-canaliculatus_F_contig11413.1250.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11413:11..1129+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATCGATGCACGCACGCACCGTTGCCTGCACGAACCAGGGCCGCTGG
CGGGAAGAACGCGCGGCTCCTGATGGGCCTCCCCTACGTGGTAGAAGGCC
TCCTCGCCGCGCTGCTTGACCTGGTCAACACGGCTTCCGAGGAAGGGAGA
AGGCAGCTGCCGGCGTACAGGATGGATCGATGCACGCACGCACCGTTGCC
TGCACGAACCAGGGCCGCTGGCGGGAAGAACGCGCGGCTCCTGATGGGCC
TCCCCTACGTGGTAGAAGGCCTCCTCGCCGCGCTGCTTGACCTGGTCAAC
ACGGCTTCCGAGGAAGGGAGAAGGCAGCTGCCGGCGTACAGGAAGGGTCT
CGTGCCCACCCTGACGGAGCTGTTGCAGGACACCTCCAACGACCCCTTCG
TGCTGCAGGCGGCGCGCACCTTGGTGGCCCGGGTGTCCGCTCGGGAAGGG
TTCGTCGTTCATGGCATCGACGGCTCCATGGACGTGGCTTGAAAGGGTCT
CGTGCCCACCCTGACGGAGCTGTTGCAGGACACCTCCAACGACCCCTTCG
TGCTGCAGGCGGCGCGCACCTTGGTGGCCCGGGTGTCCGCTCGGGAAGGG
TTCGTCGTTCATGGCATCGACGGCTCCATGGACGTGGCTTGA
back to top