mRNA_H-canaliculatus_F_contig11412.1249.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11412.1249.1
Unique NamemRNA_H-canaliculatus_F_contig11412.1249.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11412.1249.1 vs. uniprot
Match: D7FXJ8_ECTSI (Pinin_SDK_memA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ8_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 4.850e-75
Identity = 298/523 (56.98%), Postives = 313/523 (59.85%), Query Frame = 1 
Query:   10 RPRDNNTSNGGREAPLQKSYQVSREKQRAMSGTWERGLDPATAALEDDAPPPQSEGRGRLGXXXXXXXXSRGDANNSMAAYQRAADGTGSRH----DVAVRRANGASGGGVRGDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDKVGSRGDFSRFGNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRPR-------------VTSTIVVAGEEDGGDGSGTAENGELDRWNAE--PAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXVDGAXXXXXSDKEKTTEGVQAMDEEAVEEGEEGGGNARRPTGKIVVVSGGGPRGRAARVGGVAGSGGLRGSLASRLGPPMGRPVMVKGGEGGDDGGGEGGFVPLSERPMPEPSKPELHVAYKDGDTKKRNRRMFGGLMAHLGRARKQLDHDQTLIERQKSVAEMAAIRQAQEKRXXXXXXXXXXXXXXXXXXXXXXXXNARQQKTLVALHGNAFTANQEQLKGFIFTK 1521
            RPRD  TSNGGRE    +  Q SR+K RAMSGTWERGLDPATAAL+DDAPP   EGRGR G         RG    S+A YQR AD  G R     D  V   +GA   GVRGDR                                 D+ G R  FSR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  VTSTIVVAG+ED  +G GT ENGELDRWN E  PA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XX    XXXXX                                        GGPRGRAA +GGVAGSGG RGSLASRLGP                      F+PLSERPMPEPSKPELHVAYKDGDTKKRNRRMFGGLMAHLGRAR+QLDHD+++I+RQKSV EMAAIRQAQEKR                         ARQQKTLVALHGN F ANQEQLKGFIFTK
Sbjct:   72 RPRD--TSNGGREEAPHRPSQASRDKYRAMSGTWERGLDPATAALDDDAPP---EGRGRGGGGTAGL---RGGTKGSIAHYQRPADSHGDRRGRGRDRGVAPMHGA---GVRGDRDGMRG----------------------------DRTGDRDVFSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSTIVVAGDEDT-NGDGTTENGELDRWNTELPPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------XXXXXXXXXXXXXXGGPRGRAANIGGVAGSGGGRGSLASRLGPXXXXXXXXX--XXXXXXXXXXXFMPLSERPMPEPSKPELHVAYKDGDTKKRNRRMFGGLMAHLGRARQQLDHDKSIIQRQKSVVEMAAIRQAQEKRQRRQMAETAAREERDEELHKRDYIRARQQKTLVALHGNGFIANQEQLKGFIFTK 539
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11412.1249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXJ8_ECTSI4.850e-7556.98Pinin_SDK_memA domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11412contigH-canaliculatus_F_contig11412:663..3699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPinin/SDK/MemA protein
Ec32 orthologEc-28_001970.1
Hectar predicted targeting categoryother localisation
Exons4
Model size1521
Cds size1521
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11412.1249.1prot_H-canaliculatus_F_contig11412.1249.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11412 663..3699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.3304238-CDS-H-canaliculatus_F_contig11412:662..7881622928825.3304238-CDS-H-canaliculatus_F_contig11412:662..788Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11412 663..788 -
1696845579.5790844-CDS-H-canaliculatus_F_contig11412:662..7881696845579.5790844-CDS-H-canaliculatus_F_contig11412:662..788Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11412 663..788 -
1622928825.3479488-CDS-H-canaliculatus_F_contig11412:1333..14351622928825.3479488-CDS-H-canaliculatus_F_contig11412:1333..1435Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11412 1334..1435 -
1696845579.5918458-CDS-H-canaliculatus_F_contig11412:1333..14351696845579.5918458-CDS-H-canaliculatus_F_contig11412:1333..1435Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11412 1334..1435 -
1622928825.3589242-CDS-H-canaliculatus_F_contig11412:1934..19951622928825.3589242-CDS-H-canaliculatus_F_contig11412:1934..1995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11412 1935..1995 -
1696845579.6020632-CDS-H-canaliculatus_F_contig11412:1934..19951696845579.6020632-CDS-H-canaliculatus_F_contig11412:1934..1995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11412 1935..1995 -
1622928825.3735964-CDS-H-canaliculatus_F_contig11412:2467..36991622928825.3735964-CDS-H-canaliculatus_F_contig11412:2467..3699Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11412 2468..3699 -
1696845579.6103227-CDS-H-canaliculatus_F_contig11412:2467..36991696845579.6103227-CDS-H-canaliculatus_F_contig11412:2467..3699Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11412 2468..3699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11412.1249.1

>prot_H-canaliculatus_F_contig11412.1249.1 ID=prot_H-canaliculatus_F_contig11412.1249.1|Name=mRNA_H-canaliculatus_F_contig11412.1249.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=507bp
DTGRPRDNNTSNGGREAPLQKSYQVSREKQRAMSGTWERGLDPATAALED
DAPPPQSEGRGRLGGGGGGGGGSRGDANNSMAAYQRAADGTGSRHDVAVR
RANGASGGGVRGDRGGVRGERGDVTGDRGTARGERGAIRGNANGTRVDKV
GSRGDFSRFGNGGGSGRGGGGTRDHDYRASGGGGGRGVGEPDAKRPRVTS
TIVVAGEEDGGDGSGTAENGELDRWNAEPAPTSTVSATSAAAEAPSPGET
KGDDDNENDDDDDDNVDYEPEPEPEAGGGVDGAAAAAGSDKEKTTEGVQA
MDEEAVEEGEEGGGNARRPTGKIVVVSGGGPRGRAARVGGVAGSGGLRGS
LASRLGPPMGRPVMVKGGEGGDDGGGEGGFVPLSERPMPEPSKPELHVAY
KDGDTKKRNRRMFGGLMAHLGRARKQLDHDQTLIERQKSVAEMAAIRQAQ
EKRQHRLAAVSAAREERDEELHKRDYINARQQKTLVALHGNAFTANQEQL
KGFIFTK
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mRNA from alignment at H-canaliculatus_F_contig11412:663..3699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11412.1249.1 ID=mRNA_H-canaliculatus_F_contig11412.1249.1|Name=mRNA_H-canaliculatus_F_contig11412.1249.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3037bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11412:663..3699- (Hapterophycus canaliculatus Oshoro5f female)
GACACCGGCAGACCTCGTGATAACAACACCAGCAACGGTGGCCGTGAGGC
GCCCCTGCAGAAGTCCTACCAAGTATCGCGAGAGAAGCAGCGGGCGATGT
CGGGTACGTGGGAACGAGGCCTCGACCCAGCAACGGCCGCCCTCGAGGAC
GACGCGCCGCCACCGCAATCCGAAGGTAGGGGAAGGCTTGGCGGCGGCGG
CGGCGGCGGCGGCGGATCGCGGGGAGACGCCAACAACTCGATGGCCGCGT
ACCAACGCGCCGCCGACGGCACGGGCAGCAGACATGACGTCGCGGTCCGC
CGCGCCAACGGAGCCAGCGGCGGTGGGGTGCGAGGAGACAGGGGCGGGGT
GCGGGGCGAAAGGGGAGACGTGACTGGAGACAGGGGTACCGCGCGCGGAG
AGAGGGGCGCCATCAGGGGGAACGCGAACGGAACGCGAGTAGACAAGGTC
GGATCCCGAGGAGATTTCTCCCGTTTCGGGAACGGCGGTGGTTCTGGCCG
TGGAGGAGGAGGAACACGGGACCATGACTATCGCGCGAGCGGCGGCGGCG
GCGGGCGCGGGGTGGGTGAACCGGACGCGAAGCGTCCTCGGGTGACGAGC
ACGATCGTGGTAGCGGGGGAAGAGGACGGCGGTGACGGCAGCGGGACCGC
GGAGAACGGCGAGTTAGACCGCTGGAACGCCGAACCAGCCCCTACGTCAA
CTGTGTCCGCAACCTCGGCAGCGGCAGAGGCCCCGTCGCCGGGAGAAACG
AAGGGCGACGACGACAACGAAAACGACGACGACGACGACGACAACGTCGA
CTATGAACCCGAACCGGAGCCAGAAGCGGGCGGGGGTGTCGACGGGGCCG
CTGCTGCCGCCGGCTCCGACAAGGAGAAAACAACCGAGGGCGTCCAGGCT
ATGGACGAGGAGGCAGTGGAGGAAGGAGAGGAAGGGGGCGGGAACGCCCG
CAGACCCACCGGGAAGATCGTCGTCGTGTCGGGCGGGGGGCCGAGGGGTC
GCGCCGCGCGTGTCGGCGGCGTTGCTGGCAGCGGTGGACTCCGAGGAAGC
CTGGCGAGCAGGCTGGGTCCTCCCATGGGGCGGCCCGTGATGGTGAAGGG
CGGGGAGGGCGGGGACGATGGTGGCGGGGAGGGCGGGTTCGTGCCTCTTT
CGGAGAGGCCGATGCCCGAGCCCTCTAAGCCCGAGCTCCACGTGGCGTAC
AAGGACGGGGACACGAAGAAACGGAACAGAAGGTGCTGCCTTCGCCCCTG
CTTGCTCCTGGGGTTGTCGATGCCGTTGCTTTCTTGGGGCGGTGATGTTG
CTGCTGTTGCTGCTGTTGCTGCTCTTGTTGTAGATTGCTGTGTCCTGCCC
AGCCAGAAGGAGTGTAAACTCTGCCGCGTGCAACCGTCGTCGTCGTTGCC
GGAGGTGTTTCCGTTCCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGTCGCTGCTGCTGCTGTTGTTGTTGTGCTCG
GTCCACAACCACGGGAAAGCCGTGCCGTCATGTTTCTTGTGGTCAGACCT
TATGCGCACTCTCGGTATCTTGTGCACGCTCACGCCGCCCCGTCCCTCCC
CCCCCGAATCCCTTCGCCGGCCTCCTGAACGACGTTACATGCTACCGCCG
CGTGCCCCACTCCTCCCGTTTTCCCCACTTCTAATTTTCGCCCCACTGCC
GCAGGATGTTCGGTGGACTAATGGCCCACCTTGGCAGAGCGCGAAAGCAG
CTGGACCACGACCAGGTATGCGCTCCCTTGAGTGTATAGCTGAAAACATT
ACGAGGACTGGAATCAGTAATCATAGGACGCGACCCATGTGTAGTCTCTC
TCTTGCGTTGAGGAAATGCACGCTCCTACTGCCGTCGCTCCTGCCAACAC
CACCACCACCACCACCGCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTTCTACCATCACGAGGCACGTTTTCTTTCCTTCCTCGGGCTCTCC
TCTCGCTTTTTTCTTCCGACCGTTTTTATGAGAAAGGATCAACGACACCA
AAGGAATACCCTCCGCTTCAGACAAAAGGATCGCGGCTCAGGAGGTTCTA
TCCCTTGCATCTTTCCCTGAATGTCGGGCGTGCTGCCTTCCCTTCCTCTG
ATTCTTGACTTCCCTCTTTCGTGCTTTTTCTCCCTGTTTTGTTCCGATCA
TCCCGGCGTGCGGCGGCCGGCGGCACACACGGCCGTGAACGGGCGAACGC
ACGGACGAGGACAGACCCTCATCGAGCGGCAGAAAAGCGTGGCGGAGATG
GCGGCGATCAGGCAGGCGCAGGAGAAGAGGCAGCACCGGCTGGCTGCCGT
GTCCGCCGCCCGCGAGGTGAGGGTCTCGACGGGAGGGGGCCGTCCTATCA
TTGGGCTCTCCCTTATTTTCCCTCTGTTCTGCTTTTTCTTCTTCCCGTGA
GGTCTGTCTTTTCGAACTGAGGTGCTGTTTTTGAAGTGGGATACGGGTTC
TGCAGTAAAACTCTTGCCGAAGACAAAGAGCGGACACCACAGACAAGGAA
CTGCTTCATTTTTTTTTTCTCAGGATCGTCTTGGCGGTGCCGGGTGCCGC
AGGACGCAGTTGCGCGTGGAAGCGGGAGGGGAAGAAACAAGACAGGCTAG
TGCTGTACCACGATGGCGCCTTTGACGCACGCGTTGCAAGCGCCCACCCT
CCCGCTCGGAATTGCTTTCTCCATCCAAACGTCCGCATGAGCTGATTCGC
TAGGTGACCTCGATGCGCCGGTCGGCTGGCCACATGACCCGCGCCAGTCA
CCCGTGTGCGGTCGAGCCGCCCGTTCATATTTTCTCACATGTTTTCGTGG
TACACGCGTGTCCTGTGCGTCGCACGTCTCTCCTGTGCGTGCGAACGGCC
ATCGACCCCAGGAACGCGACGAAGAACTCCACAAGCGCGACTACATCAAC
GCCAGGCAGCAGAAGACCCTGGTCGCGCTGCACGGCAACGCCTTCACCGC
CAACCAGGAGCAGCTCAAGGGGTTCATCTTCACGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11412:663..3699-

>mRNA_H-canaliculatus_F_contig11412.1249.1 ID=mRNA_H-canaliculatus_F_contig11412.1249.1|Name=mRNA_H-canaliculatus_F_contig11412.1249.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3042bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11412:663..3699- (Hapterophycus canaliculatus Oshoro5f female)
GACACCGGCAGACCTCGTGATAACAACACCAGCAACGGTGGCCGTGAGGC
GCCCCTGCAGAAGTCCTACCAAGTATCGCGAGAGAAGCAGCGGGCGATGT
CGGGTACGTGGGAACGAGGCCTCGACCCAGCAACGGCCGCCCTCGAGGAC
GACGCGCCGCCACCGCAATCCGAAGGTAGGGGAAGGCTTGGCGGCGGCGG
CGGCGGCGGCGGCGGATCGCGGGGAGACGCCAACAACTCGATGGCCGCGT
ACCAACGCGCCGCCGACGGCACGGGCAGCAGACATGACGTCGCGGTCCGC
CGCGCCAACGGAGCCAGCGGCGGTGGGGTGCGAGGAGACAGGGGCGGGGT
GCGGGGCGAAAGGGGAGACGTGACTGGAGACAGGGGTACCGCGCGCGGAG
AGAGGGGCGCCATCAGGGGGAACGCGAACGGAACGCGAGTAGACAAGGTC
GGATCCCGAGGAGATTTCTCCCGTTTCGGGAACGGCGGTGGTTCTGGCCG
TGGAGGAGGAGGAACACGGGACCATGACTATCGCGCGAGCGGCGGCGGCG
GCGGGCGCGGGGTGGGTGAACCGGACGCGAAGCGTCCTCGGGTGACGAGC
ACGATCGTGGTAGCGGGGGAAGAGGACGGCGGTGACGGCAGCGGGACCGC
GGAGAACGGCGAGTTAGACCGCTGGAACGCCGAACCAGCCCCTACGTCAA
CTGTGTCCGCAACCTCGGCAGCGGCAGAGGCCCCGTCGCCGGGAGAAACG
AAGGGCGACGACGACAACGAAAACGACGACGACGACGACGACAACGTCGA
CTATGAACCCGAACCGGAGCCAGAAGCGGGCGGGGGTGTCGACGGGGCCG
CTGCTGCCGCCGGCTCCGACAAGGAGAAAACAACCGAGGGCGTCCAGGCT
ATGGACGAGGAGGCAGTGGAGGAAGGAGAGGAAGGGGGCGGGAACGCCCG
CAGACCCACCGGGAAGATCGTCGTCGTGTCGGGCGGGGGGCCGAGGGGTC
GCGCCGCGCGTGTCGGCGGCGTTGCTGGCAGCGGTGGACTCCGAGGAAGC
CTGGCGAGCAGGCTGGGTCCTCCCATGGGGCGGCCCGTGATGGTGAAGGG
CGGGGAGGGCGGGGACGATGGTGGCGGGGAGGGCGGGTTCGTGCCTCTTT
CGGAGAGGCCGATGCCCGAGCCCTCTAAGCCCGAGCTCCACGTGGCGTAC
AAGGACGGGGACACGAAGAAACGGAACAGAAGGACACCGGCAGACCTCGT
GATAACAACACCAGCAACGGTGGCCGTGAGGCGCCCCTGCAGAAGTCCTA
CCAAGTATCGCGAGAGAAGCAGCGGGCGATGTCGGGTACGTGGGAACGAG
GCCTCGACCCAGCAACGGCCGCCCTCGAGGACGACGCGCCGCCACCGCAA
TCCGAAGGTAGGGGAAGGCTTGGCGGCGGCGGCGGCGGCGGCGGCGGATC
GCGGGGAGACGCCAACAACTCGATGGCCGCGTACCAACGCGCCGCCGACG
GCACGGGCAGCAGACATGACGTCGCGGTCCGCCGCGCCAACGGAGCCAGC
GGCGGTGGGGTGCGAGGAGACAGGGGCGGGGTGCGGGGCGAAAGGGGAGA
CGTGACTGGAGACAGGGGTACCGCGCGCGGAGAGAGGGGCGCCATCAGGG
GGAACGCGAACGGAACGCGAGTAGACAAGGTCGGATCCCGAGGAGATTTC
TCCCGTTTCGGGAACGGCGGTGGTTCTGGCCGTGGAGGAGGAGGAACACG
GGACCATGACTATCGCGCGAGCGGCGGCGGCGGCGGGCGCGGGGTGGGTG
AACCGGACGCGAAGCGTCCTCGGGTGACGAGCACGATCGTGGTAGCGGGG
GAAGAGGACGGCGGTGACGGCAGCGGGACCGCGGAGAACGGCGAGTTAGA
CCGCTGGAACGCCGAACCAGCCCCTACGTCAACTGTGTCCGCAACCTCGG
CAGCGGCAGAGGCCCCGTCGCCGGGAGAAACGAAGGGCGACGACGACAAC
GAAAACGACGACGACGACGACGACAACGTCGACTATGAACCCGAACCGGA
GCCAGAAGCGGGCGGGGGTGTCGACGGGGCCGCTGCTGCCGCCGGCTCCG
ACAAGGAGAAAACAACCGAGGGCGTCCAGGCTATGGACGAGGAGGCAGTG
GAGGAAGGAGAGGAAGGGGGCGGGAACGCCCGCAGACCCACCGGGAAGAT
CGTCGTCGTGTCGGGCGGGGGGCCGAGGGGTCGCGCCGCGCGTGTCGGCG
GCGTTGCTGGCAGCGGTGGACTCCGAGGAAGCCTGGCGAGCAGGCTGGGT
CCTCCCATGGGGCGGCCCGTGATGGTGAAGGGCGGGGAGGGCGGGGACGA
TGGTGGCGGGGAGGGCGGGTTCGTGCCTCTTTCGGAGAGGCCGATGCCCG
AGCCCTCTAAGCCCGAGCTCCACGTGGCGTACAAGGACGGGGACACGAAG
AAACGGAACAGAAGGATGTTCGGTGGACTAATGGCCCACCTTGGCAGAGC
GCGAAAGCAGCTGGACCACGACCAGGATGTTCGGTGGACTAATGGCCCAC
CTTGGCAGAGCGCGAAAGCAGCTGGACCACGACCAGACCCTCATCGAGCG
GCAGAAAAGCGTGGCGGAGATGGCGGCGATCAGGCAGGCGCAGGAGAAGA
GGCAGCACCGGCTGGCTGCCGTGTCCGCCGCCCGCGAGACCCTCATCGAG
CGGCAGAAAAGCGTGGCGGAGATGGCGGCGATCAGGCAGGCGCAGGAGAA
GAGGCAGCACCGGCTGGCTGCCGTGTCCGCCGCCCGCGAGGAACGCGACG
AAGAACTCCACAAGCGCGACTACATCAACGCCAGGCAGCAGAAGACCCTG
GTCGCGCTGCACGGCAACGCCTTCACCGCCAACCAGGAGCAGCTCAAGGG
GTTCATCTTCACGAAGGAACGCGACGAAGAACTCCACAAGCGCGACTACA
TCAACGCCAGGCAGCAGAAGACCCTGGTCGCGCTGCACGGCAACGCCTTC
ACCGCCAACCAGGAGCAGCTCAAGGGGTTCATCTTCACGAAG
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