mRNA_H-canaliculatus_F_contig1140.1238.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1140.1238.1
Unique NamemRNA_H-canaliculatus_F_contig1140.1238.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1140.1238.1 vs. uniprot
Match: D7G928_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G928_ECTSI)

HSP 1 Score: 407 bits (1047), Expect = 9.150e-137
Identity = 249/445 (55.96%), Postives = 290/445 (65.17%), Query Frame = 1 
Query:    1 MLSKGLSTTRFHQGFQRRNQSQIKQAESRLEREAHKQHQSWRHVQRRRQRLGSLDKRNGFNIITGDFNPKCRCTTPFHTEPRKRETGSLSDVAERAEYLLLRDSQYKFHAPAWSGKNHDERQDLLRREGLNRPKKSTLLGVGGADLASAGAEDMFSKAIYDPSKACIIEGLVEKCIPGRYTPRKEAAARKYITAAAEQPAFATAPRSDGPARRFGQEMSGDEDGQRAAPCPAASGIVFRVAPNGLGNHRDLGARGGAAVAGIAPPKRLRGSRSTPILWSGDCKSDEGRGTALANPYSIQSPSHGDGIGGGMLTGTRVKGGREHGA-FPDQMLHAKSRGAEVLNGGDILCAIGSGR--SRELSRSKSDFAQMGVEDRSQGREKVNAAGVRAGSGEHAASKNRAQRFIDGSGKGKMCSSSTPSTGATPAARRKCGQLALDLAAVRSL 1326
            M  KGLSTTRFHQGFQRR QS I+Q ESRL+REA KQH S  H++RRRQRLGSLDKRNGFN+ITG F+   RCTTPFH +PR RETGSLS+VAERAEYLLLRDS+YKFHAPAWSGKNHDERQDLL+REGLN+PKKSTLLGVG ADLASAGA DMFSK+IYDP+K C +EGLVE C PGRYTPRK  +AR+           A A R D P  R GQE SG    QR+   P A   VFRV PNGLGNH  +G RGGA VAGIAP KRL GSRSTP + S + K++ G GT L     ++SPS G   G    TG+  +GGR  G+ F +++L A S               GS R  SR L+R             +QG  +   AG      + A+ ++  +R     G G    S+  S G +PA RR   QL LDLA +RSL
Sbjct:    1 MFLKGLSTTRFHQGFQRRKQSNIRQDESRLQREALKQHMSVLHLERRRQRLGSLDKRNGFNLITGQFDANRRCTTPFHVQPRTRETGSLSEVAERAEYLLLRDSEYKFHAPAWSGKNHDERQDLLQREGLNKPKKSTLLGVGTADLASAGANDMFSKSIYDPAKTCAVEGLVETCFPGRYTPRKVTSARRA----------AAASRDDTPPLRQGQEKSG----QRSCSSPGALDTVFRVVPNGLGNHSTVGGRGGATVAGIAPCKRLCGSRSTPTIRSPENKAEVGTGTPLRKSSPMRSPSPGG--GSRRHTGSGGEGGRGAGSVFAERLLSATS---------------GSARRGSRGLTRXXXXXXXXXXXXXTQGVARATTAGTEGFVKKTASPEDCTRRSPGEGGPG----SARLSRGQSPAERRSNDQLTLDLATIRSL 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1140.1238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G928_ECTSI9.150e-13755.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1140contigH-canaliculatus_F_contig1140:10703..12586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score412.5
Seed ortholog evalue2.4e-112
Seed eggNOG ortholog2880.D7G928
EggNOG OGs2EXPF@1,2SZAY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002120.1
Exons3
Model size1329
Cds size1329
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1140.1238.1prot_H-canaliculatus_F_contig1140.1238.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1140 10703..12586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928823.9619076-CDS-H-canaliculatus_F_contig1140:10702..109511622928823.9619076-CDS-H-canaliculatus_F_contig1140:10702..10951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1140 10703..10951 +
1696845578.9033031-CDS-H-canaliculatus_F_contig1140:10702..109511696845578.9033031-CDS-H-canaliculatus_F_contig1140:10702..10951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1140 10703..10951 +
1622928823.9769907-CDS-H-canaliculatus_F_contig1140:11292..113841622928823.9769907-CDS-H-canaliculatus_F_contig1140:11292..11384Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1140 11293..11384 +
1696845578.918924-CDS-H-canaliculatus_F_contig1140:11292..113841696845578.918924-CDS-H-canaliculatus_F_contig1140:11292..11384Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1140 11293..11384 +
1622928823.9960294-CDS-H-canaliculatus_F_contig1140:11598..125861622928823.9960294-CDS-H-canaliculatus_F_contig1140:11598..12586Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1140 11599..12586 +
1696845578.9291005-CDS-H-canaliculatus_F_contig1140:11598..125861696845578.9291005-CDS-H-canaliculatus_F_contig1140:11598..12586Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1140 11599..12586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1140.1238.1

>prot_H-canaliculatus_F_contig1140.1238.1 ID=prot_H-canaliculatus_F_contig1140.1238.1|Name=mRNA_H-canaliculatus_F_contig1140.1238.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=443bp
MLSKGLSTTRFHQGFQRRNQSQIKQAESRLEREAHKQHQSWRHVQRRRQR
LGSLDKRNGFNIITGDFNPKCRCTTPFHTEPRKRETGSLSDVAERAEYLL
LRDSQYKFHAPAWSGKNHDERQDLLRREGLNRPKKSTLLGVGGADLASAG
AEDMFSKAIYDPSKACIIEGLVEKCIPGRYTPRKEAAARKYITAAAEQPA
FATAPRSDGPARRFGQEMSGDEDGQRAAPCPAASGIVFRVAPNGLGNHRD
LGARGGAAVAGIAPPKRLRGSRSTPILWSGDCKSDEGRGTALANPYSIQS
PSHGDGIGGGMLTGTRVKGGREHGAFPDQMLHAKSRGAEVLNGGDILCAI
GSGRSRELSRSKSDFAQMGVEDRSQGREKVNAAGVRAGSGEHAASKNRAQ
RFIDGSGKGKMCSSSTPSTGATPAARRKCGQLALDLAAVRSL*
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mRNA from alignment at H-canaliculatus_F_contig1140:10703..12586+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1140.1238.1 ID=mRNA_H-canaliculatus_F_contig1140.1238.1|Name=mRNA_H-canaliculatus_F_contig1140.1238.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1884bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1140:10703..12586+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTTCGAAAGGATTATCTACGACTCGGTTTCATCAGGGGTTTCAGCG
ACGAAACCAATCTCAAATAAAACAAGCTGAATCGAGACTCGAAAGAGAGG
CTCACAAGCAGCACCAGAGCTGGCGTCACGTCCAAAGGCGACGACAGCGG
CTCGGAAGCCTCGACAAACGTAATGGGTTCAATATCATCACTGGGGATTT
TAATCCCAAGTGTCGATGCACCACACCCTTCCATACAGAGCCAAGAAAGG
TATGTCATTCGTAAATGCAGGCCGTGATTAATCTTTGGATTCAACGAAGC
GATACCTGCCGTCTCGACTATGTCTTCTGAAAATATACGTTCGGGCAGTG
AACGCAGATTCCAGTTTGTGTTATGCATCCGTGGCCTTTCCAAACGGACC
CTTCTTCGCGATGAGGAAACCAAAGAAAATAGTAAAGTTGTATCCGTCTG
GAGTGAAGGCAATGCACGGTGGCTAATGTTACGTCCTAGGATGTGGGCTG
TACGTGGATGTTGCGAAAGTCGTAACGTGCTGTCGATTAGAGCGCATCAC
TATTTCTACTCAGCCACGTCGCGCTGTTCTTTTTTCTAAGAGGGAGACGG
GATCCTTGTCAGACGTCGCCGAACGCGCAGAGTACCTTCTTCTTCGCGAT
TCACAGTACAAGTTCCACGCACCTGCCTGGAGGTGAGATTCTAGAAATCG
ATGCGCGCATCTTGCGGCAGACGAGCGTCGAATGTGATTCTTCGAACTCT
CGTCGTACTCAAGATACAAGACAACACCCAGCAGTCTCACACAGGCGACG
CGCATGCCAATCATTAACGTGTCCTGTCCTCCATTTTGTCAAGCAATCTC
ATCGGCTGCCGCCACGACGTTTATATTTCACTCTTGTTGGCTGCAGTGGG
AAGAATCACGACGAACGCCAGGATCTTTTGCGGCGAGAGGGACTCAACAG
GCCAAAGAAATCAACACTCCTCGGCGTTGGAGGTGCCGACCTCGCTTCAG
CAGGTGCCGAGGATATGTTTTCAAAGGCCATATACGACCCCTCAAAGGCT
TGCATAATCGAGGGCCTCGTCGAAAAGTGCATCCCGGGGCGCTACACACC
GCGTAAGGAAGCAGCGGCACGAAAATATATTACGGCGGCAGCAGAACAGC
CCGCGTTCGCAACAGCGCCCCGTAGCGATGGTCCCGCACGGCGTTTTGGC
CAAGAAATGAGCGGCGACGAAGATGGTCAACGAGCTGCCCCATGTCCAGC
CGCTTCAGGTATTGTGTTTCGAGTCGCCCCGAACGGGCTAGGGAATCACC
GCGACCTTGGAGCACGAGGCGGGGCAGCTGTTGCCGGAATCGCGCCGCCA
AAACGACTCCGGGGGTCTCGCAGCACCCCGATCCTTTGGAGTGGAGACTG
TAAATCAGACGAAGGCAGAGGGACGGCGCTCGCGAATCCCTACTCTATCC
AGTCACCAAGTCACGGCGACGGTATCGGGGGAGGAATGCTCACAGGCACC
AGGGTAAAAGGTGGTCGGGAGCATGGAGCGTTTCCCGATCAAATGCTTCA
CGCCAAAAGCAGAGGGGCGGAGGTTTTGAACGGTGGTGACATTCTCTGTG
CTATCGGGAGCGGAAGGAGCCGAGAATTGTCCCGCTCGAAGTCCGACTTT
GCACAGATGGGGGTCGAGGATAGAAGTCAGGGGCGGGAGAAAGTTAACGC
TGCAGGAGTGAGGGCGGGCTCCGGTGAACACGCTGCGTCGAAAAATCGTG
CTCAACGCTTCATCGATGGAAGCGGCAAGGGGAAAATGTGCTCCTCTTCT
ACCCCGTCGACGGGAGCGACCCCCGCTGCGCGGAGAAAATGTGGTCAGCT
GGCTCTGGACTTGGCTGCCGTTCGATCGCTTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1140:10703..12586+

>mRNA_H-canaliculatus_F_contig1140.1238.1 ID=mRNA_H-canaliculatus_F_contig1140.1238.1|Name=mRNA_H-canaliculatus_F_contig1140.1238.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2658bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1140:10703..12586+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTTCGAAAGGATTATCTACGACTCGGTTTCATCAGGGGTTTCAGCG
ACGAAACCAATCTCAAATAAAACAAGCTGAATCGAGACTCGAAAGAGAGG
CTCACAAGCAGCACCAGAGCTGGCGTCACGTCCAAAGGCGACGACAGCGG
CTCGGAAGCCTCGACAAACGTAATGGGTTCAATATCATCACTGGGGATTT
TAATCCCAAGTGTCGATGCACCACACCCTTCCATACAGAGCCAAGAAAGA
TGCTTTCGAAAGGATTATCTACGACTCGGTTTCATCAGGGGTTTCAGCGA
CGAAACCAATCTCAAATAAAACAAGCTGAATCGAGACTCGAAAGAGAGGC
TCACAAGCAGCACCAGAGCTGGCGTCACGTCCAAAGGCGACGACAGCGGC
TCGGAAGCCTCGACAAACGTAATGGGTTCAATATCATCACTGGGGATTTT
AATCCCAAGTGTCGATGCACCACACCCTTCCATACAGAGCCAAGAAAGAG
GGAGACGGGATCCTTGTCAGACGTCGCCGAACGCGCAGAGTACCTTCTTC
TTCGCGATTCACAGTACAAGTTCCACGCACCTGCCTGGAGAGGGAGACGG
GATCCTTGTCAGACGTCGCCGAACGCGCAGAGTACCTTCTTCTTCGCGAT
TCACAGTACAAGTTCCACGCACCTGCCTGGAGTGGGAAGAATCACGACGA
ACGCCAGGATCTTTTGCGGCGAGAGGGACTCAACAGGCCAAAGAAATCAA
CACTCCTCGGCGTTGGAGGTGCCGACCTCGCTTCAGCAGGTGCCGAGGAT
ATGTTTTCAAAGGCCATATACGACCCCTCAAAGGCTTGCATAATCGAGGG
CCTCGTCGAAAAGTGCATCCCGGGGCGCTACACACCGCGTAAGGAAGCAG
CGGCACGAAAATATATTACGGCGGCAGCAGAACAGCCCGCGTTCGCAACA
GCGCCCCGTAGCGATGGTCCCGCACGGCGTTTTGGCCAAGAAATGAGCGG
CGACGAAGATGGTCAACGAGCTGCCCCATGTCCAGCCGCTTCAGGTATTG
TGTTTCGAGTCGCCCCGAACGGGCTAGGGAATCACCGCGACCTTGGAGCA
CGAGGCGGGGCAGCTGTTGCCGGAATCGCGCCGCCAAAACGACTCCGGGG
GTCTCGCAGCACCCCGATCCTTTGGAGTGGAGACTGTAAATCAGACGAAG
GCAGAGGGACGGCGCTCGCGAATCCCTACTCTATCCAGTCACCAAGTCAC
GGCGACGGTATCGGGGGAGGAATGCTCACAGGCACCAGGGTAAAAGGTGG
TCGGGAGCATGGAGCGTTTCCCGATCAAATGCTTCACGCCAAAAGCAGAG
GGGCGGAGGTTTTGAACGGTGGTGACATTCTCTGTGCTATCGGGAGCGGA
AGGAGCCGAGAATTGTCCCGCTCGAAGTCCGACTTTGCACAGATGGGGGT
CGAGGATAGAAGTCAGGGGCGGGAGAAAGTTAACGCTGCAGGAGTGAGGG
CGGGCTCCGGTGAACACGCTGCGTCGAAAAATCGTGCTCAACGCTTCATC
GATGGAAGCGGCAAGGGGAAAATGTGCTCCTCTTCTACCCCGTCGACGGG
AGCGACCCCCGCTGCGCGGAGAAAATGTGGTCAGCTGGCTCTGGACTTGG
CTGCCGTTCGATCGCTTTAGTGGGAAGAATCACGACGAACGCCAGGATCT
TTTGCGGCGAGAGGGACTCAACAGGCCAAAGAAATCAACACTCCTCGGCG
TTGGAGGTGCCGACCTCGCTTCAGCAGGTGCCGAGGATATGTTTTCAAAG
GCCATATACGACCCCTCAAAGGCTTGCATAATCGAGGGCCTCGTCGAAAA
GTGCATCCCGGGGCGCTACACACCGCGTAAGGAAGCAGCGGCACGAAAAT
ATATTACGGCGGCAGCAGAACAGCCCGCGTTCGCAACAGCGCCCCGTAGC
GATGGTCCCGCACGGCGTTTTGGCCAAGAAATGAGCGGCGACGAAGATGG
TCAACGAGCTGCCCCATGTCCAGCCGCTTCAGGTATTGTGTTTCGAGTCG
CCCCGAACGGGCTAGGGAATCACCGCGACCTTGGAGCACGAGGCGGGGCA
GCTGTTGCCGGAATCGCGCCGCCAAAACGACTCCGGGGGTCTCGCAGCAC
CCCGATCCTTTGGAGTGGAGACTGTAAATCAGACGAAGGCAGAGGGACGG
CGCTCGCGAATCCCTACTCTATCCAGTCACCAAGTCACGGCGACGGTATC
GGGGGAGGAATGCTCACAGGCACCAGGGTAAAAGGTGGTCGGGAGCATGG
AGCGTTTCCCGATCAAATGCTTCACGCCAAAAGCAGAGGGGCGGAGGTTT
TGAACGGTGGTGACATTCTCTGTGCTATCGGGAGCGGAAGGAGCCGAGAA
TTGTCCCGCTCGAAGTCCGACTTTGCACAGATGGGGGTCGAGGATAGAAG
TCAGGGGCGGGAGAAAGTTAACGCTGCAGGAGTGAGGGCGGGCTCCGGTG
AACACGCTGCGTCGAAAAATCGTGCTCAACGCTTCATCGATGGAAGCGGC
AAGGGGAAAATGTGCTCCTCTTCTACCCCGTCGACGGGAGCGACCCCCGC
TGCGCGGAGAAAATGTGGTCAGCTGGCTCTGGACTTGGCTGCCGTTCGAT
CGCTTTAG
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