mRNA_H-canaliculatus_F_contig11397.1234.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11397.1234.1
Unique NamemRNA_H-canaliculatus_F_contig11397.1234.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11397.1234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11397contigH-canaliculatus_F_contig11397:1883..2206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928823.0163348-UTR-H-canaliculatus_F_contig11397:1882..19031622928823.0163348-UTR-H-canaliculatus_F_contig11397:1882..1903Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11397 1883..1903 +
1696845578.3541212-UTR-H-canaliculatus_F_contig11397:1882..19031696845578.3541212-UTR-H-canaliculatus_F_contig11397:1882..1903Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11397 1883..1903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928823.0790591-CDS-H-canaliculatus_F_contig11397:1903..22061622928823.0790591-CDS-H-canaliculatus_F_contig11397:1903..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11397 1904..2206 +
1696845578.3636005-CDS-H-canaliculatus_F_contig11397:1903..22061696845578.3636005-CDS-H-canaliculatus_F_contig11397:1903..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11397 1904..2206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11397.1234.1prot_H-canaliculatus_F_contig11397.1234.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11397 1904..2206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11397.1234.1

>prot_H-canaliculatus_F_contig11397.1234.1 ID=prot_H-canaliculatus_F_contig11397.1234.1|Name=mRNA_H-canaliculatus_F_contig11397.1234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MGRGGLGTRAAGNQITRWVSKIRRFPKAVCQARKTVALHSAKYKLGLQQG
GLMDIVAPLKSVSVARMTASPGSELPSEKQRFSYTICGRKVRGMTRCGLY
*
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mRNA from alignment at H-canaliculatus_F_contig11397:1883..2206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11397.1234.1 ID=mRNA_H-canaliculatus_F_contig11397.1234.1|Name=mRNA_H-canaliculatus_F_contig11397.1234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=324bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11397:1883..2206+ (Hapterophycus canaliculatus Oshoro5f female)
GAACACGCAAACGCGCGCGTGATGGGACGAGGAGGTCTTGGTACAAGAGC
AGCAGGAAACCAGATCACGAGATGGGTTTCCAAGATACGAAGGTTCCCCA
AAGCAGTGTGTCAAGCTCGTAAGACCGTTGCTCTTCACAGCGCGAAGTAC
AAGTTGGGCCTGCAACAGGGTGGATTGATGGATATCGTCGCCCCTCTTAA
AAGCGTATCAGTCGCCAGGATGACCGCTTCGCCCGGCAGTGAGCTGCCGT
CGGAAAAACAGCGTTTTAGCTATACGATTTGCGGGAGGAAAGTACGCGGC
ATGACAAGATGTGGTTTGTACTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11397:1883..2206+

>mRNA_H-canaliculatus_F_contig11397.1234.1 ID=mRNA_H-canaliculatus_F_contig11397.1234.1|Name=mRNA_H-canaliculatus_F_contig11397.1234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11397:1883..2206+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGACGAGGAGGTCTTGGTACAAGAGCAGCAGGAAACCAGATCACGAG
ATGGGTTTCCAAGATACGAAGGTTCCCCAAAGCAGTGTGTCAAGCTCGTA
AGACCGTTGCTCTTCACAGCGCGAAGTACAAGTTGGGCCTGCAACAGGGT
GGATTGATGGATATCGTCGCCCCTCTTAAAAGCGTATCAGTCGCCAGGAT
GACCGCTTCGCCCGGCAGTGAGCTGCCGTCGGAAAAACAGCGTTTTAGCT
ATACGATTTGCGGGAGGAAAGTACGCGGCATGACAAGATGTGGTTTGTAC
TAAATGGGACGAGGAGGTCTTGGTACAAGAGCAGCAGGAAACCAGATCAC
GAGATGGGTTTCCAAGATACGAAGGTTCCCCAAAGCAGTGTGTCAAGCTC
GTAAGACCGTTGCTCTTCACAGCGCGAAGTACAAGTTGGGCCTGCAACAG
GGTGGATTGATGGATATCGTCGCCCCTCTTAAAAGCGTATCAGTCGCCAG
GATGACCGCTTCGCCCGGCAGTGAGCTGCCGTCGGAAAAACAGCGTTTTA
GCTATACGATTTGCGGGAGGAAAGTACGCGGCATGACAAGATGTGGTTTG
TACTAA
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