mRNA_H-canaliculatus_F_contig11382.1228.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11382.1228.1
Unique NamemRNA_H-canaliculatus_F_contig11382.1228.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11382.1228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11382contigH-canaliculatus_F_contig11382:2868..3298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.1085963-CDS-H-canaliculatus_F_contig11382:2867..32451622928822.1085963-CDS-H-canaliculatus_F_contig11382:2867..3245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11382 2868..3245 +
1696845577.9105628-CDS-H-canaliculatus_F_contig11382:2867..32451696845577.9105628-CDS-H-canaliculatus_F_contig11382:2867..3245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11382 2868..3245 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.1199157-UTR-H-canaliculatus_F_contig11382:3245..32981622928822.1199157-UTR-H-canaliculatus_F_contig11382:3245..3298Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11382 3246..3298 +
1696845577.9219468-UTR-H-canaliculatus_F_contig11382:3245..32981696845577.9219468-UTR-H-canaliculatus_F_contig11382:3245..3298Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11382 3246..3298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11382.1228.1prot_H-canaliculatus_F_contig11382.1228.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11382 2868..3245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11382.1228.1

>prot_H-canaliculatus_F_contig11382.1228.1 ID=prot_H-canaliculatus_F_contig11382.1228.1|Name=mRNA_H-canaliculatus_F_contig11382.1228.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp
PTKNTVVCTKQLASSGRGEHAVVCCTSFHRQGRRRIDISPKPPLSVPSPP
CLEGASPPATSDVAPPAENPPAAAADVAAEGWSAAAVRRLLFSSDSPICC
LKSPQFFIISFNSFSGLPRSLPLVS*
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mRNA from alignment at H-canaliculatus_F_contig11382:2868..3298+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11382.1228.1 ID=mRNA_H-canaliculatus_F_contig11382.1228.1|Name=mRNA_H-canaliculatus_F_contig11382.1228.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=431bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11382:2868..3298+ (Hapterophycus canaliculatus Oshoro5f female)
CCAACCAAAAATACAGTTGTCTGTACCAAGCAACTTGCCTCTTCGGGTCG
CGGGGAACATGCGGTGGTCTGCTGTACGAGTTTCCACCGACAAGGTCGGC
GCAGGATAGACATATCACCGAAACCACCTCTGTCCGTCCCTTCGCCTCCT
TGTCTCGAAGGAGCTTCCCCACCAGCAACCTCAGATGTGGCGCCGCCGGC
AGAGAACCCACCGGCGGCGGCTGCTGATGTCGCGGCCGAAGGTTGGTCTG
CTGCTGCTGTACGTCGATTGTTGTTTTCATCTGACAGTCCCATTTGCTGC
CTCAAATCTCCCCAATTCTTCATCATCTCGTTCAACTCTTTCTCCGGTCT
CCCCCGCTCACTCCCACTCGTATCTTAAACCAATCCACCGATAGCTCGCC
GGCGACCGCGCCACAGCAGCTCTTGCTCAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11382:2868..3298+

>mRNA_H-canaliculatus_F_contig11382.1228.1 ID=mRNA_H-canaliculatus_F_contig11382.1228.1|Name=mRNA_H-canaliculatus_F_contig11382.1228.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11382:2868..3298+ (Hapterophycus canaliculatus Oshoro5f female)
CCAACCAAAAATACAGTTGTCTGTACCAAGCAACTTGCCTCTTCGGGTCG
CGGGGAACATGCGGTGGTCTGCTGTACGAGTTTCCACCGACAAGGTCGGC
GCAGGATAGACATATCACCGAAACCACCTCTGTCCGTCCCTTCGCCTCCT
TGTCTCGAAGGAGCTTCCCCACCAGCAACCTCAGATGTGGCGCCGCCGGC
AGAGAACCCACCGGCGGCGGCTGCTGATGTCGCGGCCGAAGGTTGGTCTG
CTGCTGCTGTACGTCGATTGTTGTTTTCATCTGACAGTCCCATTTGCTGC
CTCAAATCTCCCCAATTCTTCATCATCTCGTTCAACTCTTTCTCCGGTCT
CCCCCGCTCACTCCCACTCGTATCTTAACCAACCAAAAATACAGTTGTCT
GTACCAAGCAACTTGCCTCTTCGGGTCGCGGGGAACATGCGGTGGTCTGC
TGTACGAGTTTCCACCGACAAGGTCGGCGCAGGATAGACATATCACCGAA
ACCACCTCTGTCCGTCCCTTCGCCTCCTTGTCTCGAAGGAGCTTCCCCAC
CAGCAACCTCAGATGTGGCGCCGCCGGCAGAGAACCCACCGGCGGCGGCT
GCTGATGTCGCGGCCGAAGGTTGGTCTGCTGCTGCTGTACGTCGATTGTT
GTTTTCATCTGACAGTCCCATTTGCTGCCTCAAATCTCCCCAATTCTTCA
TCATCTCGTTCAACTCTTTCTCCGGTCTCCCCCGCTCACTCCCACTCGTA
TCTTAA
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