mRNA_H-canaliculatus_F_contig11374.1224.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11374.1224.1
Unique NamemRNA_H-canaliculatus_F_contig11374.1224.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11374.1224.1 vs. uniprot
Match: D7G9H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H8_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.700e-22
Identity = 182/339 (53.69%), Postives = 195/339 (57.52%), Query Frame = 1 
Query:  124 GRQGLRRVRRSMGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTSLPARTPPALLIPRRTTDSGHGGDSPILPPPDKVPKLDEDAIAGESSAGLGGAXXXXXXXXPS---TAEELLSFPGGPSPSALAPAAAAAAPVHDMDESVLGSMGDAAAAAGGGHGAAGSPLLFEGFG-GFEHKGSPDDL--------AADTPHTSSGFDGGGXXXXXXXXXXXPPG---------GIVGSVGAPQ----LPLSSSSLLSAGGAAPGERLGXSPAASTEAVXXXXLGGDGTEADDPVASALEGIGDD--LIGASDDPY 1059
            GRQGLRR RRSMGA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTSLPARTPPALLIPRRT DSGHGGDSP+LPPP+KVPKLD+              XXXXXXXX S    A +LLS PG P         A ++P+                         GSPLLF+  G GF HKG  DD         AA      SG  G G                       G+ G  G P      PL +   + AGG   GE LG S    +       LG DG EADDPVASAL GIGDD  LIG SDDPY
Sbjct:  131 GRQGLRRARRSMGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTSLPARTPPALLIPRRT-DSGHGGDSPVLPPPEKVPKLDDGEXXXXXXXXXXXXXXXXXXXXASPHSAAGDLLSLPGAPPDDIYHSPFAGSSPLGGXXXXXXXXXXXXXXXX------XGSPLLFDDPGSGFGHKGPADDATGGAGAAGAAALQMPLSGMPGKGMAVSSPGAGEAXXXXXXXXXTALGLSGLEGFPASPDPAPLPADEEVGAGGGGVGE-LGASAGGPSS-----LLGHDGAEADDPVASALRGIGDDVDLIGGSDDPY 456
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BLAST of mRNA_H-canaliculatus_F_contig11374.1224.1 vs. uniprot
Match: A0A6H5K2H0_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H0_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.000e-18
Identity = 181/387 (46.77%), Postives = 195/387 (50.39%), Query Frame = 1 
Query:    1 QDKADQLDAAVLAKLDEVGPMIPIPPRAAIRGDTVPAAPIIGRQGLRRVRRSMGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTSLPARTPPALLIPRRTTDSGHGGDSPILPPPDKVPKLDEDAIAGESSAGLGGAXXXXXXXXP-STAEELLSFPGGPSPSALAPAAAAAAPVHDMDESVLGSMGDAAA--AAGGGHGAAGSPLLFEGFG-GFEHKGSPDDLAADTPHTSSGFDGGGXXXXXXXXXXXPPGGIVGSV------------------------GAPQLPLSSS-SLLSAG---GAAPGERLGXSPAASTEAVXXXXLGGDGTEADDPVASALEGIGDD--LIGASDDPY 1059
            +DKADQLDAA LAKLDEV PMIPIPPR+A+R D  P+ PIIGRQGLRR RRSMGA+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                           + VPKL                XXX     P S A +LLS PG P         A ++P        LGS+G  AA  A G G GA GSPLLF+  G GF HKG             +G   GGXXXXX      PP GI G                          G    P S   +LL A    GA  G  LG S    +       LG DG EADDPVASAL GIGDD  LIG SDDPY
Sbjct:  103 EDKADQLDAATLAKLDEVCPMIPIPPRSAVR-DPTPSPPIIGRQGLRRARRSMGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA------------------------------------------EGVPKLXXXXXXXXXXXXXXXXXXXAAGASPHSAAGDLLSLPGAPPDDIYHSPFAGSSP--------LGSLGGGAAGVAGGRGQGAVGSPLLFDDPGSGFGHKGP----------AGAGDATGGXXXXXAAALQMPPSGISGKXXXXXXXXXXXXXXXXXXXXXXXXXGIEGFPASPDRALLPADEETGAGGGGELGASAGGPSS-----LLGHDGAEADDPVASALRGIGDDVDLIGGSDDPY 423
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11374.1224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9H8_ECTSI1.700e-2253.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2H0_9PHAE4.000e-1846.77PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11374contigH-canaliculatus_F_contig11374:302..1924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_000970.1
Exons2
Model size1572
Cds size1572
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.583705-CDS-H-canaliculatus_F_contig11374:301..13611622928821.583705-CDS-H-canaliculatus_F_contig11374:301..1361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11374 302..1361 +
1696845577.6959758-CDS-H-canaliculatus_F_contig11374:301..13611696845577.6959758-CDS-H-canaliculatus_F_contig11374:301..1361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11374 302..1361 +
1622928821.5999703-CDS-H-canaliculatus_F_contig11374:1412..19241622928821.5999703-CDS-H-canaliculatus_F_contig11374:1412..1924Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11374 1413..1924 +
1696845577.7047763-CDS-H-canaliculatus_F_contig11374:1412..19241696845577.7047763-CDS-H-canaliculatus_F_contig11374:1412..1924Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11374 1413..1924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11374.1224.1prot_H-canaliculatus_F_contig11374.1224.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11374 302..1924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11374.1224.1

>prot_H-canaliculatus_F_contig11374.1224.1 ID=prot_H-canaliculatus_F_contig11374.1224.1|Name=mRNA_H-canaliculatus_F_contig11374.1224.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=524bp
QDKADQLDAAVLAKLDEVGPMIPIPPRAAIRGDTVPAAPIIGRQGLRRVR
RSMGAAGGGGASSSGGGGGGGGGGGGAGEDNDDSGDSEDSGDNQARAMSR
GGSMGGGSSSFTSLPARTPPALLIPRRTTDSGHGGDSPILPPPDKVPKLD
EDAIAGESSAGLGGAAGAAGASSPSTAEELLSFPGGPSPSALAPAAAAAA
PVHDMDESVLGSMGDAAAAAGGGHGAAGSPLLFEGFGGFEHKGSPDDLAA
DTPHTSSGFDGGGGDGSGAAGAGAPPGGIVGSVGAPQLPLSSSSLLSAGG
AAPGERLGSSPAASTEAVAGSLLGGDGTEADDPVASALEGIGDDLIGASD
DPYAPAPASALAAPSLHAVPPPGGGGGGGVMGTAARVDHAPLGTTAAAAV
STGPPPPPSALPTGAAAPTPPTAQSLAAAGDTGVGCATAAPLADESAASS
SGSAGLGAVVGASQAVPTVGGLVEGSGSAAAAEARTAPSTAAGAAPTVEE
TAEETSAAPLPKEGSSSGGMSAA*
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mRNA from alignment at H-canaliculatus_F_contig11374:302..1924+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11374.1224.1 ID=mRNA_H-canaliculatus_F_contig11374.1224.1|Name=mRNA_H-canaliculatus_F_contig11374.1224.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1623bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11374:302..1924+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGACAAGGCGGACCAGCTGGATGCCGCGGTTCTGGCGAAGCTCGATGA
GGTGGGCCCGATGATACCCATCCCTCCTCGCGCCGCAATCCGCGGGGACA
CCGTCCCGGCCGCGCCCATCATCGGCCGACAGGGGCTCCGCCGTGTAAGA
CGCTCCATGGGCGCTGCCGGCGGGGGCGGTGCTTCCTCCTCCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGTGCGGGTGAAGACAATGACGACA
GCGGGGATAGCGAGGACAGCGGGGACAACCAAGCGAGAGCGATGAGCCGA
GGGGGCAGCATGGGGGGCGGGTCGTCATCGTTCACCTCTCTCCCAGCGAG
GACTCCCCCCGCTCTCCTCATCCCGCGACGCACGACAGACTCGGGCCACG
GCGGGGACAGCCCCATCTTGCCACCGCCCGATAAGGTCCCGAAGCTAGAT
GAAGACGCCATCGCCGGAGAAAGCTCCGCGGGGTTGGGGGGCGCGGCGGG
GGCAGCGGGAGCCTCTTCCCCGTCTACCGCCGAGGAGTTGCTCTCCTTTC
CCGGCGGTCCCTCTCCCTCGGCTCTCGCCCCCGCCGCCGCCGCCGCCGCC
CCCGTCCACGACATGGACGAGTCCGTGCTGGGCAGCATGGGGGATGCGGC
TGCGGCAGCGGGAGGCGGACATGGGGCTGCCGGCTCTCCGCTTTTGTTCG
AAGGCTTCGGCGGCTTCGAGCACAAGGGCTCGCCCGACGACCTCGCCGCG
GATACCCCGCACACGTCGTCTGGCTTTGACGGTGGTGGTGGTGATGGTAG
TGGTGCTGCTGGTGCTGGTGCACCGCCGGGAGGGATCGTAGGGAGCGTAG
GGGCTCCGCAGCTGCCGCTATCGTCGTCGTCGTTGTTGTCTGCCGGAGGA
GCAGCACCGGGCGAGAGGCTGGGGTCGTCGCCCGCGGCCTCGACGGAGGC
CGTGGCAGGGTCCTTGTTAGGTGGCGACGGCACGGAAGCGGACGATCCCG
TGGCGTCTGCTCTGGAGGGCATCGGCGACGACCTCATCGGGGCGAGCGAC
GACCCGTACGGTGCTGGCAGCGGGGGGCTGCTGAGCGGTGGTGCGGAGAG
GATGACGCAAGCGCCGGCACCGGCATCAGCACTAGCGGCGCCCTCCTTGC
ATGCCGTGCCTCCCCCCGGCGGCGGCGGCGGCGGCGGCGTGATGGGGACT
GCCGCAAGGGTAGATCACGCGCCATTAGGGACGACCGCAGCAGCAGCAGT
ATCCACGGGACCCCCGCCACCACCATCGGCGTTGCCAACGGGGGCTGCGG
CACCGACGCCCCCGACCGCCCAGTCCCTGGCAGCAGCAGGTGACACAGGA
GTTGGTTGCGCTACTGCGGCACCCCTAGCTGATGAGTCGGCCGCTTCGTC
GTCCGGTAGTGCAGGGCTAGGTGCGGTAGTCGGCGCGTCTCAAGCCGTAC
CAACCGTGGGCGGCTTGGTGGAGGGTTCGGGTTCCGCCGCCGCCGCCGAG
GCACGAACCGCTCCCTCGACCGCAGCAGGAGCGGCGCCAACAGTGGAGGA
AACCGCCGAGGAAACCTCCGCTGCGCCGTTGCCAAAGGAGGGTTCGTCGA
GCGGGGGGATGTCAGCGGCTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11374:302..1924+

>mRNA_H-canaliculatus_F_contig11374.1224.1 ID=mRNA_H-canaliculatus_F_contig11374.1224.1|Name=mRNA_H-canaliculatus_F_contig11374.1224.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3144bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11374:302..1924+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGACAAGGCGGACCAGCTGGATGCCGCGGTTCTGGCGAAGCTCGATGA
GGTGGGCCCGATGATACCCATCCCTCCTCGCGCCGCAATCCGCGGGGACA
CCGTCCCGGCCGCGCCCATCATCGGCCGACAGGGGCTCCGCCGTGTAAGA
CGCTCCATGGGCGCTGCCGGCGGGGGCGGTGCTTCCTCCTCCGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGTGCGGGTGAAGACAATGACGACA
GCGGGGATAGCGAGGACAGCGGGGACAACCAAGCGAGAGCGATGAGCCGA
GGGGGCAGCATGGGGGGCGGGTCGTCATCGTTCACCTCTCTCCCAGCGAG
GACTCCCCCCGCTCTCCTCATCCCGCGACGCACGACAGACTCGGGCCACG
GCGGGGACAGCCCCATCTTGCCACCGCCCGATAAGGTCCCGAAGCTAGAT
GAAGACGCCATCGCCGGAGAAAGCTCCGCGGGGTTGGGGGGCGCGGCGGG
GGCAGCGGGAGCCTCTTCCCCGTCTACCGCCGAGGAGTTGCTCTCCTTTC
CCGGCGGTCCCTCTCCCTCGGCTCTCGCCCCCGCCGCCGCCGCCGCCGCC
CCCGTCCACGACATGGACGAGTCCGTGCTGGGCAGCATGGGGGATGCGGC
TGCGGCAGCGGGAGGCGGACATGGGGCTGCCGGCTCTCCGCTTTTGTTCG
AAGGCTTCGGCGGCTTCGAGCACAAGGGCTCGCCCGACGACCTCGCCGCG
GATACCCCGCACACGTCGTCTGGCTTTGACGGTGGTGGTGGTGATGGTAG
TGGTGCTGCTGGTGCTGGTGCACCGCCGGGAGGGATCGTAGGGAGCGTAG
GGGCTCCGCAGCTGCCGCTATCGTCGTCGTCGTTGTTGTCTGCCGGAGGA
GCAGCACCGGGCGAGAGGCTGGGGTCGTCGCCCGCGGCCTCGACGGAGGC
CGTGGCAGGGTCCTTGTTAGGTGGCGACGGCACGGAAGCGGACGATCCCG
TGGCGTCTGCTCTGGAGGGCATCGGCGACGACCTCATCGGGGCGAGCGAC
GACCCGTACGCAGGACAAGGCGGACCAGCTGGATGCCGCGGTTCTGGCGA
AGCTCGATGAGGTGGGCCCGATGATACCCATCCCTCCTCGCGCCGCAATC
CGCGGGGACACCGTCCCGGCCGCGCCCATCATCGGCCGACAGGGGCTCCG
CCGTGTAAGACGCTCCATGGGCGCTGCCGGCGGGGGCGGTGCTTCCTCCT
CCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGCGGGTGAAGAC
AATGACGACAGCGGGGATAGCGAGGACAGCGGGGACAACCAAGCGAGAGC
GATGAGCCGAGGGGGCAGCATGGGGGGCGGGTCGTCATCGTTCACCTCTC
TCCCAGCGAGGACTCCCCCCGCTCTCCTCATCCCGCGACGCACGACAGAC
TCGGGCCACGGCGGGGACAGCCCCATCTTGCCACCGCCCGATAAGGTCCC
GAAGCTAGATGAAGACGCCATCGCCGGAGAAAGCTCCGCGGGGTTGGGGG
GCGCGGCGGGGGCAGCGGGAGCCTCTTCCCCGTCTACCGCCGAGGAGTTG
CTCTCCTTTCCCGGCGGTCCCTCTCCCTCGGCTCTCGCCCCCGCCGCCGC
CGCCGCCGCCCCCGTCCACGACATGGACGAGTCCGTGCTGGGCAGCATGG
GGGATGCGGCTGCGGCAGCGGGAGGCGGACATGGGGCTGCCGGCTCTCCG
CTTTTGTTCGAAGGCTTCGGCGGCTTCGAGCACAAGGGCTCGCCCGACGA
CCTCGCCGCGGATACCCCGCACACGTCGTCTGGCTTTGACGGTGGTGGTG
GTGATGGTAGTGGTGCTGCTGGTGCTGGTGCACCGCCGGGAGGGATCGTA
GGGAGCGTAGGGGCTCCGCAGCTGCCGCTATCGTCGTCGTCGTTGTTGTC
TGCCGGAGGAGCAGCACCGGGCGAGAGGCTGGGGTCGTCGCCCGCGGCCT
CGACGGAGGCCGTGGCAGGGTCCTTGTTAGGTGGCGACGGCACGGAAGCG
GACGATCCCGTGGCGTCTGCTCTGGAGGGCATCGGCGACGACCTCATCGG
GGCGAGCGACGACCCGTACGCGCCGGCACCGGCATCAGCACTAGCGGCGC
CCTCCTTGCATGCCGTGCCTCCCCCCGGCGGCGGCGGCGGCGGCGGCGTG
ATGGGGACTGCCGCAAGGGTAGATCACGCGCCATTAGGGACGACCGCAGC
AGCAGCAGTATCCACGGGACCCCCGCCACCACCATCGGCGTTGCCAACGG
GGGCTGCGGCACCGACGCCCCCGACCGCCCAGTCCCTGGCAGCAGCAGGT
GACACAGGAGTTGGTTGCGCTACTGCGGCACCCCTAGCTGATGAGTCGGC
CGCTTCGTCGTCCGGTAGTGCAGGGCTAGGTGCGGTAGTCGGCGCGTCTC
AAGCCGTACCAACCGTGGGCGGCTTGGTGGAGGGTTCGGGTTCCGCCGCC
GCCGCCGAGGCACGAACCGCTCCCTCGACCGCAGCAGGAGCGGCGCCAAC
AGTGGAGGAAACCGCCGAGGAAACCTCCGCTGCGCCGTTGCCAAAGGAGG
GTTCGTCGAGCGGGGGGATGTCAGCGGCTTGACGCCGGCACCGGCATCAG
CACTAGCGGCGCCCTCCTTGCATGCCGTGCCTCCCCCCGGCGGCGGCGGC
GGCGGCGGCGTGATGGGGACTGCCGCAAGGGTAGATCACGCGCCATTAGG
GACGACCGCAGCAGCAGCAGTATCCACGGGACCCCCGCCACCACCATCGG
CGTTGCCAACGGGGGCTGCGGCACCGACGCCCCCGACCGCCCAGTCCCTG
GCAGCAGCAGGTGACACAGGAGTTGGTTGCGCTACTGCGGCACCCCTAGC
TGATGAGTCGGCCGCTTCGTCGTCCGGTAGTGCAGGGCTAGGTGCGGTAG
TCGGCGCGTCTCAAGCCGTACCAACCGTGGGCGGCTTGGTGGAGGGTTCG
GGTTCCGCCGCCGCCGCCGAGGCACGAACCGCTCCCTCGACCGCAGCAGG
AGCGGCGCCAACAGTGGAGGAAACCGCCGAGGAAACCTCCGCTGCGCCGT
TGCCAAAGGAGGGTTCGTCGAGCGGGGGGATGTCAGCGGCTTGA
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