mRNA_H-canaliculatus_F_contig1137.1219.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1137.1219.1
Unique NamemRNA_H-canaliculatus_F_contig1137.1219.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1137.1219.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 345 bits (886), Expect = 2.600e-113
Identity = 166/293 (56.66%), Postives = 202/293 (68.94%), Query Frame = 1
Query:   34 VENKPYAYNAGGVKEVQARAKANTDPTELAANGGGDRFPLYFQPRAPNGNYLESNEIAKRHGVCGDPRLGGTK--NTYSTPNSEWEVLDSFVSGQEIEIDVVVVFYHWGHLEFFICDTADLDHPDDVVTQECLNKYPLTRAPDDNAASPIDPEYPGRYYMDPPCRKDETEQNVGVWVPQDPYNVRMRYLLPDITCTHCVLQMHYMSGDRCRHVGVDEFNPPFWNSECAPKKEDWIDLDTGSICGQGGGYPEEFWACSDFAIVSSGSPPVPAPVXXXXXXEPYTAQTLEPTTDG 906
            VE  P+ YNA G K V+ RA  N D   L A GGG+ FPLYF   A NGNYLE+NEIAKRHGVCGDP     +  N YST N  W+ LDSF SGQ +E+D+V+  YHWGH EFF+C+T D+D PD V TQEC N +PLTRA DD  ASPIDP YPGRYY+DP CR++ETEQ+       + YN++MRY+LPDI C HC+LQM Y +G+ C+H+G +EFNP  W S CAP K DWI+LD   +CG  G YPEEFWACSDF++ S GS P  AP+      +P   +  E +TDG
Sbjct:   46 VEFCPHCYNARGPKYVKQRAYDNVDSATLDAYGGGEEFPLYFGEFADNGNYLETNEIAKRHGVCGDPEQNADEGTNVYSTANINWDPLDSFTSGQVLEMDIVMNAYHWGHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQSSNSI---EGYNIKMRYVLPDIECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWIELDR-YVCGTRGQYPEEFWACSDFSMTSDGSTPADAPMP-----DPVDEEDDEDSTDG 329          
BLAST of mRNA_H-canaliculatus_F_contig1137.1219.1 vs. uniprot
Match: D7FZR0_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 1.040e-99
Identity = 151/275 (54.91%), Postives = 183/275 (66.55%), Query Frame = 1
Query:   31 NVENKPYAYNAGGVKEVQARAKANTDPTELAANGGGDRFPLYFQPRAPNGNYLESNEIAKRHGVCGDPRLG--GTKNTYSTPNSEWEVLDSFVSGQEIEIDVVVVFYHWGHLEFFICDTADLDHPDDVVTQECLNKYPLTRAPDDNAASPIDPEYPGRYYMDPPCRKD--ETEQNVGVWVPQDPYNVRMRYLLPDITCTHCVLQMHYMSGDRCRHVGVDEFNPPFWNSECAPKKEDWIDLDTGSICGQGGGYPEEFWACSDFAIVSSGSPPVPAP 843
            N +  P+ YNA G    +AR     DP  L ++GGG  FPL F P APNGNYLE NE+A RHGVCGDP        NTYST +S WE L ++ SGQ +E  +V+  +HWGHLEFFIC+ AD D PD + TQEC N+YPLTRA  D+  SPIDP +PGRYY DP CR    E +Q   +       N++MRY+LPDI C+HC+LQM Y +G+ C H+G +EFNPP W S CAP KEDW+D  T   CGQGG YPEEFWACSDF+I    +PP P P
Sbjct:   43 NFDGCPHCYNAHGSAGTKARGIELMDPDVLESHGGGSEFPLAFVPLAPNGNYLEPNEVAVRHGVCGDPEQTKPAGSNTYSTASSNWEPLATYRSGQVLEFVIVMNAHHWGHLEFFICN-ADND-PDGIPTQECFNEYPLTRAEGDDDNSPIDPNFPGRYYCDPTCRGQTGEVDQTKPLHAISGE-NMKMRYVLPDIECSHCILQMVYHTGNTCHHIGYEEFNPPSWPSACAPNKEDWVDT-TREACGQGGYYPEEFWACSDFSITRDATPPSPTP 313          
BLAST of mRNA_H-canaliculatus_F_contig1137.1219.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 1.730e-98
Identity = 154/275 (56.00%), Postives = 187/275 (68.00%), Query Frame = 1
Query:   25 FDNVENKPYAYNAGGVKEVQARAKANTDPTELAANGGGDRFPLYFQPRAPNGNYLESNEIAKRHGVCGDPRLGGTK--NTYSTPNSEWEVLDSFVSGQEIEIDVVVVFYHWGHLEFFICDTADLDHPDDVVTQECLNKYPLTRAPDDNAASPIDPEYPGRYYMDPPCRKDETEQNVGVWVPQDPYNVRMRYLLPDITCTHCVLQMHYMSGDRCRHVGVDEFNPPFWNSECAPKKEDWIDLDTGSICGQGGGYPEEFWACSDFAIVSSGSPPVPAP 843
            F  ++  P+ YNA G   V+ RAKA TDP  L   GGGD +PLYF   A NGNYLE++EIAKRHG+CGDP     +  N YST N  W+VL SF SG+ +E+D+++  YHWGH EFF+C+  ++D PD V TQEC N+YPLTRA DD  ASPIDP YPGRYY+DP CR  ETEQ      P+  YN++MRY+LPDI C  CVLQMH         +G DEF+PP W S CAP K DWI+L+   ICG+ G YPEEFWACSD ++ S GS P P P
Sbjct:   47 FPGIDYCPHCYNARGPDYVKERAKAKTDPAVLNEYGGGDEYPLYFGDFADNGNYLETDEIAKRHGICGDPEQNADEGSNVYSTANIGWDVLGSFKSGEVLEMDIIMNAYHWGHCEFFLCNADEMDDPDGVPTQECFNRYPLTRAADDGDASPIDPNYPGRYYVDPECRAGETEQGSPEGAPKG-YNIKMRYVLPDIECDRCVLQMH---------IGYDEFDPPSWPSTCAPNKSDWIELNR-YICGEEGAYPEEFWACSDISLTSDGSAPPPTP 310          
BLAST of mRNA_H-canaliculatus_F_contig1137.1219.1 vs. uniprot
Match: D7FZQ9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ9_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 1.800e-97
Identity = 149/269 (55.39%), Postives = 182/269 (67.66%), Query Frame = 1
Query:   31 NVENKPYAYNAGGVKEVQARAKANTDPTELAANGGGDRFPLYFQPRAPNGNYLESNEIAKRHGVCGDPRLG--GTKNTYSTPNSEWEVLDSFVSGQEIEIDVVVVFYHWGHLEFFICDTADLDHPDDVVTQECLNKYPLTRAPDDNAASPIDPEYPGRYYMDPPCRKDETEQNVGVWVPQ-DPYNVRMRYLLPDITCTHCVLQMHYMSGDRCRHVGVDEFNPPFWNSECAPKKEDWIDLDTGSICGQGGGYPEEFWACSDFAIVSSGSP 828
            N +  P  YNA G    +AR     DP  LA +GGG  FPL F PRAPNGNYLE NE+A RHGVCGDP        NTYST +S WE L +F SGQ++E +VV+  YHWGHLEFFIC+ AD D P+ + TQEC N+YPLTRA  D+  SPIDP++PGRYY DP CR +E E +    V      N++MRY+LPDI C+HC+LQM Y +G+ C H+G D+F+PP W  +CA  KE W++  T   CGQ G YPEEFWACSDF+I S G P
Sbjct:   44 NFDGCPQCYNAHGSNGTKARGNELMDPDVLAKHGGGIDFPLSFVPRAPNGNYLEPNEVAVRHGVCGDPEQNKPSGSNTYSTASSNWEPLTTFQSGQDLEFNVVMNAYHWGHLEFFICN-ADND-PNGIPTQECFNEYPLTRAEGDDYNSPIDPDFPGRYYCDPTCRGEEGEVDQTKPVHAISGENMKMRYVLPDIECSHCILQMVYHTGNTCYHIGYDDFDPPSWPGDCATTKEQWVNT-TVEACGQEGYYPEEFWACSDFSITSDGPP 309          
BLAST of mRNA_H-canaliculatus_F_contig1137.1219.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 2.280e-95
Identity = 145/289 (50.17%), Postives = 187/289 (64.71%), Query Frame = 1
Query:    1 MRSRTPRRFDNVENKPYAYNAGGVKEVQARAKANTDPTELAANGGGDRFPLYFQ----PRAPNGNYLESNEIAKRHGVCGDPRLGGTK--NTYSTPNSEWEVLDSFVSGQEIEIDVVVVFYHWGHLEFFICDTADLDHPDDVVTQECLNKYPLTRAPDDNAASPIDPEYPGRYYMDPPCRKDETEQNVGVWVPQDPYNVRMRYLLPD-ITCTHCVLQMHYMSGDRCRHVGVDEFNPPFWNSECAPKKEDWIDLDTGSICGQGGGYPEEFWACSDFAIVSSG-SPPVPAP 843
            M   T R F+ +E  P  YNA G   V+ R   NTDP  LA  G G+ +PL +       A NGNYLE +EIAKRHG+CGDP     +  N YSTPN +W +L+++  GQ +EI + +  YHWGH+EFFIC+  +++ PD +  QEC N YPLTRA  D+  SPIDP YPGRYY+DP CR+ ET+Q       QD Y +   Y LP+ +TC  C+LQM+Y +G+ C+HVG +EF P  W S CAP+K DWI+LD   +CG+ G YPEEFWAC+DFAI   G + P PAP
Sbjct:    3 MTLHTCRPFERMEYCPSCYNARGPTYVKERGMVNTDPAVLAEYGDGE-WPLRWAYEKGEMAENGNYLEKDEIAKRHGICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGA-QDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDR-YLCGENGSYPEEFWACADFAITPDGMANPTPAP 288          
BLAST of mRNA_H-canaliculatus_F_contig1137.1219.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 1.800e-90
Identity = 153/284 (53.87%), Postives = 179/284 (63.03%), Query Frame = 1
Query:   25 FDNVENKPYAYNAGGVKEVQARAKANTDPTELAANGGGDRFPLYFQ----PRAPNGNYLESNEIAKRHGVCGDPRLGGT-----KNTYSTPNSEWEVLDSFVSGQEIEIDVVVVFYHWGHLEFFICDTADLDHPDDVVTQECLNKYPLTRAPDDNAASPIDPEYPGRYYMDPPCRKDETEQNVGVWVPQDPYNVRMRYLLPD-ITCTHCVLQMHYMSGDRCRHVGVDEFNPPFWNSECAPKKEDWIDLDTGSICGQGG-GYPEEFWACSDFAIVSSGSPPVPAP 843
            F  +E    AYNAGG  EVQ RA+  TDP  LA  G G  +PL +       APNGNY+E   I+ RHGVCGDP+ G       +NTYSTPN +W VL  F  GQ +EI  V+  +H+GHLEFFICDT DLD PDDV TQEC NKYPLTR+  D   SPIDP YPGRYY DPPCR++ETEQ+   W     Y + M Y LP+ + C HCVLQM Y +G +C H G +EFNP  W SECAP K DWIDL     CG       EEFWACSD AI +  +  +P P
Sbjct:   10 FPLLEKNAGAYNAGGQVEVQDRARRLTDPAILAEYGDG-WYPLRWVYDKGEMAPNGNYIEPQGISVRHGVCGDPKSGDQGGQDGENTYSTPNKDWPVLQEFKQGQSMEIKAVMKAWHYGHLEFFICDTQDLDDPDDVATQECFNKYPLTRSEGDGVNSPIDPNYPGRYYADPPCRENETEQDYD-WRAGGGYVMTMNYDLPENLVCEHCVLQMWYYTGHKCYHPGYEEFNPASWGSECAPNKSDWIDLSI-DYCGDNEWNLAEEFWACSDIAITAETNWCLPCP 290          
BLAST of mRNA_H-canaliculatus_F_contig1137.1219.1 vs. uniprot
Match: A0A6H5KDP0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP0_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 7.980e-84
Identity = 128/235 (54.47%), Postives = 157/235 (66.81%), Query Frame = 1
Query:  118 LAANGGGDRFPLYFQPRAPNGNYLESNEIAKRHGVCGDPRLGGTKNTY--STPNSEWEVLDSFVSGQEIEIDVVVVFYHWGHLEFFICDTADLDHPDDVVTQECLNKYPLTRAPDDNAASPIDPEYPGRYYMDPPCRKDETEQ-----NVGVWVPQDPYNVRMRYLLPDITCTHCVLQMHYMSGDRCRHVGVDEFNPPFWNSECAPKKEDWIDLDTGSICGQGGG-YPEEFWACS 798
            L   GG D +PL +   A NGN LE  EI+KRH +CGDP  G  +     +TPN+EWEVL +F+SGQ IE+D+V+ FYHW   +F ICD ADL+ PD V TQECLN +PLTRAPDD   SPIDP Y GRYY DPPCR +ET+Q      +      DPY ++MR+L PDI C+HC+LQ++Y +G  C+HV  DEFNPP W S CAP K DW+  D    CG G   Y EEFW+CS
Sbjct:    6 LEGLGGVDVYPLQYPDFAENGNMLEPEEISKRHFLCGDPVSGSDEEDILCTTPNAEWEVLSTFISGQVIEMDIVMNFYHW--FQFSICDAADLNDPDGVGTQECLNTHPLTRAPDDGDGSPIDPNYTGRYYPDPPCRLNETDQAFYKDGLPSGTGYDPYGIKMRFLFPDIECSHCILQVYYFTGHTCKHVDYDEFNPPSWRSNCAPHKSDWVFTDLPR-CGTGKYLYAEEFWSCS 237          
BLAST of mRNA_H-canaliculatus_F_contig1137.1219.1 vs. uniprot
Match: A0A6H5L279_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L279_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 1.270e-75
Identity = 126/246 (51.22%), Postives = 149/246 (60.57%), Query Frame = 1
Query:  106 DPTELAANGGGDRFPLYFQPRAPNGNYLESNEIAKRHGVCGDPRL--GGTKNTYSTPNSEWEVLDSFVSGQEIEIDVVVVFYHWGHLEFFICDTADLDHPDDVVTQECLNKYPLTRAPDDNAASPIDPEYPGRYYMDPPCRKDETEQNVGVWVPQDPYNVRMRYLLPDITCTHCVLQMHYMSGDRCRHVGVDEFNPPFWNSECAPKKEDWIDLDTGSICGQGGGYPEEFWACSDFAIVSSGSPPVP 837
            DP  L ++GGG+ FPL F P APNGNYLE NE+A RHGVCGDP        NTYST +S WE L +F SGQ +E DVV+  YHWGHLEFFIC+ AD D PD + TQEC N+                P   G                          N++MRY+LPDI C+HC+LQM Y +G+ C H+G +EFNPP W S CAP KEDW+D  TG  CGQGG YPEEFWACSDF+I S  +  VP
Sbjct:    2 DPDVLESHGGGNEFPLAFVPLAPNGNYLEPNEVAVRHGVCGDPEQFKPSGSNTYSTASSNWEPLATFQSGQVLEFDVVMNAYHWGHLEFFICN-ADSD-PDGIPTQECFNQP--------------SPAISGN-------------------------NMKMRYVLPDIECSHCILQMVYHTGNTCYHMGYEEFNPPSWPSACAPDKEDWVDT-TGQACGQGGYYPEEFWACSDFSIASGPTCCVP 205          
BLAST of mRNA_H-canaliculatus_F_contig1137.1219.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 4.100e-74
Identity = 120/207 (57.97%), Postives = 145/207 (70.05%), Query Frame = 1
Query:   25 FDNVENKPYAYNAGGVKEVQARAKANTDPTELAANGGGDRFPLYFQPRAPNGNYLESNEIAKRHGVCGDPRLGGTK--NTYSTPNSEWEVLDSFVSGQEIEIDVVVVFYHWGHLEFFICDTADLDHPDDVVTQECLNKYPLTRAPDDNAASPIDPEYPGRYYMDPPCRKDETEQNVGVWVPQDPYNVRMRYLLPDITCTHCVLQMHY 639
            F  ++  P+ YNA G   V+ RAKA TDP  L   GGGD +PLYF   A NGNYLE++EIAKRHG+CGDP     +  N YST N  W+VLDSF SG+ +EID+++  YHWGH EFF+C+  ++D PD V TQEC N+YPLTRA DD  ASPIDP YPGRYY+DP CR  ETEQ      P+  YN++MRY+LPDI C  CVLQM Y
Sbjct:   47 FPGIDYCPHCYNARGPDYVKERAKAKTDPAVLNEYGGGDEYPLYFGDFADNGNYLETDEIAKRHGICGDPEQNADEGSNVYSTANIGWDVLDSFKSGEVLEIDIIMNAYHWGHCEFFLCNADEMDDPDGVPTQECFNRYPLTRAADDGNASPIDPNYPGRYYVDPECRAGETEQGSPEGAPKG-YNIKMRYVLPDIECDRCVLQMVY 252          
BLAST of mRNA_H-canaliculatus_F_contig1137.1219.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 1.290e-73
Identity = 119/246 (48.37%), Postives = 151/246 (61.38%), Query Frame = 1
Query:  109 PTELAANGGGDRFPLYFQPRAPNGNYLESNEIAKRHGVCGDPRLGGTK--NTYSTPNSEWEVLDSFVSGQEIEIDVVVVFYHWGHLEFFICDTADL-DHPDDVVTQECLNKYPLTRAPDDNAASPIDPEYPGRYYMDPPCRKDETEQNV--GVWVPQDPYNVRMRYLLPD-ITCTHCVLQMHYMSGDRCRHVGVDEFNPPFWNSECAPKKEDWIDLDTGSICGQGGGYPEEFWACSDFAIVSSGSP 828
            P  + A GG   +P +   RA NGNY+ES+E+A+RHGVCGDP     +  N Y   NS + VL+++  G  +E+ +VV  YHWGH+E F+CD  DL D PD VVTQ C N+YPL RA DD    PIDP   GR+ +DPPCR  ET+Q +  G +          R+ LP  +TC  CV+QM Y +G+ C+H G  EFNPP W S CAP K DWI+   G  CG G  YPEEFW C+D +I S G P
Sbjct:   63 PAAIRARGGDQPWPHFNGERAKNGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDV---ATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQ-CGDGDAYPEEFWNCADVSITSDGGP 304          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1137.1219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMS9_ECTSI2.600e-11356.66EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D7FZR0_ECTSI1.040e-9954.91EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FRE8_ECTSI1.730e-9856.00EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FZQ9_ECTSI1.800e-9755.39EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G4D7_ECTSI2.280e-9550.17EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FU28_ECTSI1.800e-9053.87EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KDP0_9PHAE7.980e-8454.47WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L279_9PHAE1.270e-7551.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ37_9PHAE4.100e-7457.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD67_ECTSI1.290e-7348.37EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1137contigH-canaliculatus_F_contig1137:382..2730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score296.6
Seed ortholog evalue1.4e-77
Seed eggNOG ortholog2880.D7FU28
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.4.21.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons5
Model size948
Cds size948
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1137.1219.1prot_H-canaliculatus_F_contig1137.1219.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1137 382..2730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928820.4390738-CDS-H-canaliculatus_F_contig1137:381..6211622928820.4390738-CDS-H-canaliculatus_F_contig1137:381..621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 382..621 +
1696845577.3327003-CDS-H-canaliculatus_F_contig1137:381..6211696845577.3327003-CDS-H-canaliculatus_F_contig1137:381..621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 382..621 +
1622928820.4625244-CDS-H-canaliculatus_F_contig1137:1093..12041622928820.4625244-CDS-H-canaliculatus_F_contig1137:1093..1204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 1094..1204 +
1696845577.3442569-CDS-H-canaliculatus_F_contig1137:1093..12041696845577.3442569-CDS-H-canaliculatus_F_contig1137:1093..1204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 1094..1204 +
1622928820.4808645-CDS-H-canaliculatus_F_contig1137:1544..18331622928820.4808645-CDS-H-canaliculatus_F_contig1137:1544..1833Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 1545..1833 +
1696845577.3565123-CDS-H-canaliculatus_F_contig1137:1544..18331696845577.3565123-CDS-H-canaliculatus_F_contig1137:1544..1833Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 1545..1833 +
1622928820.50027-CDS-H-canaliculatus_F_contig1137:2242..24191622928820.50027-CDS-H-canaliculatus_F_contig1137:2242..2419Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 2243..2419 +
1696845577.3650491-CDS-H-canaliculatus_F_contig1137:2242..24191696845577.3650491-CDS-H-canaliculatus_F_contig1137:2242..2419Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 2243..2419 +
1622928820.5194573-CDS-H-canaliculatus_F_contig1137:2599..27301622928820.5194573-CDS-H-canaliculatus_F_contig1137:2599..2730Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 2600..2730 +
1696845577.373805-CDS-H-canaliculatus_F_contig1137:2599..27301696845577.373805-CDS-H-canaliculatus_F_contig1137:2599..2730Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 2600..2730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1137.1219.1

>prot_H-canaliculatus_F_contig1137.1219.1 ID=prot_H-canaliculatus_F_contig1137.1219.1|Name=mRNA_H-canaliculatus_F_contig1137.1219.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=316bp
MRSRTPRRFDNVENKPYAYNAGGVKEVQARAKANTDPTELAANGGGDRFP
LYFQPRAPNGNYLESNEIAKRHGVCGDPRLGGTKNTYSTPNSEWEVLDSF
VSGQEIEIDVVVVFYHWGHLEFFICDTADLDHPDDVVTQECLNKYPLTRA
PDDNAASPIDPEYPGRYYMDPPCRKDETEQNVGVWVPQDPYNVRMRYLLP
DITCTHCVLQMHYMSGDRCRHVGVDEFNPPFWNSECAPKKEDWIDLDTGS
ICGQGGGYPEEFWACSDFAIVSSGSPPVPAPVAPAPTPEPYTAQTLEPTT
DGETYSWPVRTLSVNV
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mRNA from alignment at H-canaliculatus_F_contig1137:382..2730+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1137.1219.1 ID=mRNA_H-canaliculatus_F_contig1137.1219.1|Name=mRNA_H-canaliculatus_F_contig1137.1219.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2349bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1137:382..2730+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTTCACGTACGCCACGCAGATTCGACAATGTGGAAAACAAGCCGTA CGCCTACAATGCCGGCGGGGTCAAGGAAGTCCAGGCCAGAGCCAAGGCTA ACACCGACCCCACCGAGTTGGCCGCGAACGGCGGCGGCGACAGGTTCCCC CTGTACTTCCAACCTCGGGCTCCCAACGGGAACTACCTGGAGAGCAACGA AATCGCCAAGAGACACGGCGTGTGCGGAGATCCCAGGCTGGTGAGAGAGC GAAGTACATCGAAGACGAACAGCAGACGTTATCGGTTGTGATTGTTTTGT TTCTTACCCATGCTTGTTTCAACGTACTTGCGGCAAGAGGAGAGGTAGAG GGTTTACTCCTTGCGACAATTCGCGAAGTCGAACGGCTCATCACATGGCA TCGACGGAAGGGGGCGGGGATGCTAAAGCATTCTTGGTTATGCTGACAAA CGGGATCCGCAATAAATTCTAGTTCGATCAAGTTTCTAGTTCGATCAAGT TTATGTACAGCGAAGAGCGACATAATTTGCAAGAGCTTCCGAGCGAAAGG CAAAGTCGAGTGGACTCGATAAGGAGGCCGAGGAACTACAACTTAGGGAA TGTTCCTGCTGAAGCCTGACCTTGACCATCGAGGAGCGTTGCACAGATTT TGGCATCTAGTCTACAGCCACGCCGTTAAACACTCTTGCTGTTGCTCTCC CCATCATGGCAGGGTGGCACGAAGAACACGTATAGCACGCCCAACAGCGA GTGGGAAGTCCTGGACTCGTTCGTCAGCGGACAAGAGATCGAGATTGACG TCGTTGTCGTCTTCTACCACTGGGTAAGCTTATCACCTGACGGATGGACG AACGGAGCGGAGCCAACCCCCGTCATAACCAAACACGTGCAGTCAAGCAT TTTTTGTGTTGAGGATAGAACGCCATTTGCGCTTCTTGTACCCTGCGCTT GTGATGGTTAATGCCGCGAAAATGGTCCTCGTCCGACTTACCGCCGTTGC ATGCTGGCGTTTACATGGAAACACTCACCGATGACATGGACCTTCGTGCA CTTCGACCCCCGATTCGCACAAGAACAAACTCTTCGTGTCCTGCATTCTG CTCACTCTGGGCTGTCGTCATGTACCTCGGTGTACCCCGTGTGAACTTTA TCTCGTCCCCCAGGGTCACCTTGAGTTCTTCATCTGCGACACGGCGGATC TCGACCACCCCGACGACGTGGTCACCCAGGAGTGCTTGAACAAGTACCCC CTCACCCGTGCCCCCGACGACAACGCCGCAAGCCCCATCGACCCCGAATA CCCGGGGCGCTACTACATGGACCCGCCCTGCCGCAAGGACGAGACGGAGC AGAACGTCGGCGTCTGGGTGCCGCAAGACCCGTACAACGTCCGTATGCGC TACCTGCTGCCGGACATCACCTGCACCCACTGCGTGCTGCAGATGCACTA CAGTGAGTTTCCTTTGGTTTGGAGGCGGGTGGGTCCTGGCCGTTCGCACC GTCGCTGCTGCTCCGAACAAGTTTGCTGCCACCTTCTTCAGAGTTTGCGT GCCGGTGGGCGCTTAGCGGCGCTTACTATGTTCTGACGGCTAAGGCCAAA CACCTTGTGCGCACATCGACACCACGTGCGTCGGACGGCGCACGTGACGC CTTTATACCCGCCCTACTCGCCTCCCGACACGTTCTACCCCGCCTGATCA AACTCACCGTATTTTAGCGAGTGGCACCGTGACAAGCCTTTCGTTCCTCT GACCCCCGCCCCCCTCTTCAACGTTTATGAAGATCGAGCGTTCGCCCTTC ATCATTTCCGACGCCATCCGTGCACTCGCCCCCCTCCCTCCCCTCTCTTG TGGTATTTTAGTGAGCGGCGACCGGTGCAGACACGTCGGAGTCGACGAGT TCAACCCCCCCTTCTGGAACAGCGAGTGTGCTCCCAAGAAGGAGGACTGG ATCGACCTGGACACCGGGAGCATCTGCGGTCAAGGCGGCGGCTACCCGGA GGAGTTCTGGGCCTGCAGCGACTTTGCCATCGTTTCAAGTAAGCGAGGGA TTTGCGTGTAGCTGGTTGCCATAGCTGTGTTGAGGCTGCGCATGAACCCT TGCCCTACAGGTTCCTACCGTGACTGGCACCTAGAAACATGAACTCTTCG TTCGCAAGTCTCACACGTCTACAGCGATTCTTCTTCCTCCTCGCCACCTC ATCCCCTTCTCACCCCAGGCGGCTCGCCGCCTGTACCAGCACCTGTCGCA CCGGCCCCGACCCCCGAGCCTTACACGGCGCAAACACTCGAACCAACCAC AGACGGTGAGACCTATTCATGGCCAGTCCGAACCCTGTCTGTTAATGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1137:382..2730+

>mRNA_H-canaliculatus_F_contig1137.1219.1 ID=mRNA_H-canaliculatus_F_contig1137.1219.1|Name=mRNA_H-canaliculatus_F_contig1137.1219.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1896bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1137:382..2730+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTTCACGTACGCCACGCAGATTCGACAATGTGGAAAACAAGCCGTA
CGCCTACAATGCCGGCGGGGTCAAGGAAGTCCAGGCCAGAGCCAAGGCTA
ACACCGACCCCACCGAGTTGGCCGCGAACGGCGGCGGCGACAGGTTCCCC
CTGTACTTCCAACCTCGGGCTCCCAACGGGAACTACCTGGAGAGCAACGA
AATCGCCAAGAGACACGGCGTGTGCGGAGATCCCAGGCTGATGCGTTCAC
GTACGCCACGCAGATTCGACAATGTGGAAAACAAGCCGTACGCCTACAAT
GCCGGCGGGGTCAAGGAAGTCCAGGCCAGAGCCAAGGCTAACACCGACCC
CACCGAGTTGGCCGCGAACGGCGGCGGCGACAGGTTCCCCCTGTACTTCC
AACCTCGGGCTCCCAACGGGAACTACCTGGAGAGCAACGAAATCGCCAAG
AGACACGGCGTGTGCGGAGATCCCAGGCTGGGTGGCACGAAGAACACGTA
TAGCACGCCCAACAGCGAGTGGGAAGTCCTGGACTCGTTCGTCAGCGGAC
AAGAGATCGAGATTGACGTCGTTGTCGTCTTCTACCACTGGGGTGGCACG
AAGAACACGTATAGCACGCCCAACAGCGAGTGGGAAGTCCTGGACTCGTT
CGTCAGCGGACAAGAGATCGAGATTGACGTCGTTGTCGTCTTCTACCACT
GGGGTCACCTTGAGTTCTTCATCTGCGACACGGCGGATCTCGACCACCCC
GACGACGTGGTCACCCAGGAGTGCTTGAACAAGTACCCCCTCACCCGTGC
CCCCGACGACAACGCCGCAAGCCCCATCGACCCCGAATACCCGGGGCGCT
ACTACATGGACCCGCCCTGCCGCAAGGACGAGACGGAGCAGAACGTCGGC
GTCTGGGTGCCGCAAGACCCGTACAACGTCCGTATGCGCTACCTGCTGCC
GGACATCACCTGCACCCACTGCGTGCTGCAGATGCACTACAGGTCACCTT
GAGTTCTTCATCTGCGACACGGCGGATCTCGACCACCCCGACGACGTGGT
CACCCAGGAGTGCTTGAACAAGTACCCCCTCACCCGTGCCCCCGACGACA
ACGCCGCAAGCCCCATCGACCCCGAATACCCGGGGCGCTACTACATGGAC
CCGCCCTGCCGCAAGGACGAGACGGAGCAGAACGTCGGCGTCTGGGTGCC
GCAAGACCCGTACAACGTCCGTATGCGCTACCTGCTGCCGGACATCACCT
GCACCCACTGCGTGCTGCAGATGCACTACATGAGCGGCGACCGGTGCAGA
CACGTCGGAGTCGACGAGTTCAACCCCCCCTTCTGGAACAGCGAGTGTGC
TCCCAAGAAGGAGGACTGGATCGACCTGGACACCGGGAGCATCTGCGGTC
AAGGCGGCGGCTACCCGGAGGAGTTCTGGGCCTGCAGCGACTTTGCCATC
GTTTCAATGAGCGGCGACCGGTGCAGACACGTCGGAGTCGACGAGTTCAA
CCCCCCCTTCTGGAACAGCGAGTGTGCTCCCAAGAAGGAGGACTGGATCG
ACCTGGACACCGGGAGCATCTGCGGTCAAGGCGGCGGCTACCCGGAGGAG
TTCTGGGCCTGCAGCGACTTTGCCATCGTTTCAAGCGGCTCGCCGCCTGT
ACCAGCACCTGTCGCACCGGCCCCGACCCCCGAGCCTTACACGGCGCAAA
CACTCGAACCAACCACAGACGGTGAGACCTATTCATGGCCAGTCCGAACC
CTGTCTGTTAATGTTGCGGCTCGCCGCCTGTACCAGCACCTGTCGCACCG
GCCCCGACCCCCGAGCCTTACACGGCGCAAACACTCGAACCAACCACAGA
CGGTGAGACCTATTCATGGCCAGTCCGAACCCTGTCTGTTAATGTT
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