mRNA_H-canaliculatus_F_contig11365.1217.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11365.1217.1
Unique NamemRNA_H-canaliculatus_F_contig11365.1217.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11365.1217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11365contigH-canaliculatus_F_contig11365:1754..2300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size547
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928820.3045363-UTR-H-canaliculatus_F_contig11365:1753..19701622928820.3045363-UTR-H-canaliculatus_F_contig11365:1753..1970Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11365 1754..1970 +
1696845577.300281-UTR-H-canaliculatus_F_contig11365:1753..19701696845577.300281-UTR-H-canaliculatus_F_contig11365:1753..1970Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11365 1754..1970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928820.323725-CDS-H-canaliculatus_F_contig11365:1970..23001622928820.323725-CDS-H-canaliculatus_F_contig11365:1970..2300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11365 1971..2300 +
1696845577.3121436-CDS-H-canaliculatus_F_contig11365:1970..23001696845577.3121436-CDS-H-canaliculatus_F_contig11365:1970..2300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11365 1971..2300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11365.1217.1prot_H-canaliculatus_F_contig11365.1217.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11365 1971..2300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11365.1217.1

>prot_H-canaliculatus_F_contig11365.1217.1 ID=prot_H-canaliculatus_F_contig11365.1217.1|Name=mRNA_H-canaliculatus_F_contig11365.1217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
MKGQPRPKEGGQKRRSPSRAAANTTRGMQHAPQGQQKRRPRPQQRSNDRG
DTDSRGQQRRASPTPAEAANKHAARATRRQRTSDGGSTKKVRQAKHTQGT
KHEKEDRHRS
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mRNA from alignment at H-canaliculatus_F_contig11365:1754..2300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11365.1217.1 ID=mRNA_H-canaliculatus_F_contig11365.1217.1|Name=mRNA_H-canaliculatus_F_contig11365.1217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=547bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11365:1754..2300+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGGCTGGTTTGATGCTAGATGAGGCGACAGCCGGCGCGCATCTGTTCG
ACGAAGAGGGCCACAGGACTGATCCGGGGCTGAGGGAGTAACAATGGCAG
CAACGGCAAGATCACCACCACGACGCCGATGGCGACCATCACCACGACCA
TCACCACCGGAGTCGACAACGGCTCGTCCGACGTGAGGCTGCGACGCTGG
AAACAGCAGCAATCGAGATGAAAGGCCAACCTCGGCCAAAGGAGGGGGGG
CAGAAAAGGCGCAGCCCTAGCAGAGCAGCAGCCAACACAACACGAGGAAT
GCAGCACGCGCCGCAGGGCCAGCAGAAACGGCGGCCGCGGCCACAGCAAC
GCAGCAACGACAGGGGCGACACAGACAGCCGAGGGCAACAGCGGAGGGCA
TCGCCGACGCCGGCGGAAGCGGCGAACAAGCACGCCGCTAGGGCCACCCG
CAGGCAACGCACCAGCGACGGCGGAAGCACGAAAAAGGTACGACAAGCCA
AGCACACGCAGGGTACAAAACATGAGAAAGAAGACAGGCACAGGTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11365:1754..2300+

>mRNA_H-canaliculatus_F_contig11365.1217.1 ID=mRNA_H-canaliculatus_F_contig11365.1217.1|Name=mRNA_H-canaliculatus_F_contig11365.1217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11365:1754..2300+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAAGGCCAACCTCGGCCAAAGGAGGGGGGGCAGAAAAGGCGCAGCCC
TAGCAGAGCAGCAGCCAACACAACACGAGGAATGCAGCACGCGCCGCAGG
GCCAGCAGAAACGGCGGCCGCGGCCACAGCAACGCAGCAACGACAGGGGC
GACACAGACAGCCGAGGGCAACAGCGGAGGGCATCGCCGACGCCGGCGGA
AGCGGCGAACAAGCACGCCGCTAGGGCCACCCGCAGGCAACGCACCAGCG
ACGGCGGAAGCACGAAAAAGGTACGACAAGCCAAGCACACGCAGGGTACA
AAACATGAGAAAGAAGACAGGCACAGGTCGATGAAAGGCCAACCTCGGCC
AAAGGAGGGGGGGCAGAAAAGGCGCAGCCCTAGCAGAGCAGCAGCCAACA
CAACACGAGGAATGCAGCACGCGCCGCAGGGCCAGCAGAAACGGCGGCCG
CGGCCACAGCAACGCAGCAACGACAGGGGCGACACAGACAGCCGAGGGCA
ACAGCGGAGGGCATCGCCGACGCCGGCGGAAGCGGCGAACAAGCACGCCG
CTAGGGCCACCCGCAGGCAACGCACCAGCGACGGCGGAAGCACGAAAAAG
GTACGACAAGCCAAGCACACGCAGGGTACAAAACATGAGAAAGAAGACAG
GCACAGGTCG
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