mRNA_H-canaliculatus_F_contig11365.1216.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11365.1216.1
Unique NamemRNA_H-canaliculatus_F_contig11365.1216.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11365.1216.1 vs. uniprot
Match: D8LMN8_ECTSI (WD repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.260e-8
Identity = 39/73 (53.42%), Postives = 45/73 (61.64%), Query Frame = -1 
Query:   88 AGRIVSVDVYRAP--SEGAPA-RGRDKEERXXXXXXXXXXXXXXXXX--EWSERSSDGPLVEIMMSSPSASPT 291
            AGR+V+VDVYR P   + AP+ RGRDKE R                   +WSER+S GPLVEIMMSSPS SPT
Sbjct: 1439 AGRVVTVDVYRQPPSEDTAPSTRGRDKEGRRLDGGGSSRRTHHAPAGGAKWSERTSSGPLVEIMMSSPSVSPT 1511
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BLAST of mRNA_H-canaliculatus_F_contig11365.1216.1 vs. uniprot
Match: A0A6H5KWS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.410e-8
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = -1 
Query:   88 AGRIVSVDVYRAP--SEGAPA-RGRDKEERXXXXXXXXXXXXXXXXX--EWSERSSDGPLVEIMMSSPSASPT 291
            AGR+V+VDVYR P   + AP+ RGRDK+ R                    WSER+S GPLVEIMMSSPS SPT
Sbjct: 1917 AGRVVTVDVYRQPPSEDTAPSTRGRDKDGRRLDGGGSSRRTHHAPAGGARWSERTSSGPLVEIMMSSPSVSPT 1989
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11365.1216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMN8_ECTSI1.260e-853.42WD repeat protein (Partial) (Fragment) n=1 Tax=Ect... [more]
A0A6H5KWS7_9PHAE4.410e-852.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11365contigH-canaliculatus_F_contig11365:507..860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928820.2466922-CDS-H-canaliculatus_F_contig11365:506..8601622928820.2466922-CDS-H-canaliculatus_F_contig11365:506..860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11365 507..860 +
1696845577.290336-CDS-H-canaliculatus_F_contig11365:506..8601696845577.290336-CDS-H-canaliculatus_F_contig11365:506..860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11365 507..860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11365.1216.1prot_H-canaliculatus_F_contig11365.1216.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11365 507..860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11365.1216.1

>prot_H-canaliculatus_F_contig11365.1216.1 ID=prot_H-canaliculatus_F_contig11365.1216.1|Name=mRNA_H-canaliculatus_F_contig11365.1216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
RRPKRVRRSRRRRRRRRRRRRSSRRRSRRGGGRRRRRHHDLHERAVRRPL
APLRAAPTAAPAAEGVAGTASLFLIPAPGRCALRRCSIDVHGNNAASGNS
CYCPFSVAAGTSASTAAP
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mRNA from alignment at H-canaliculatus_F_contig11365:507..860+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11365.1216.1 ID=mRNA_H-canaliculatus_F_contig11365.1216.1|Name=mRNA_H-canaliculatus_F_contig11365.1216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=354bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11365:507..860+ (Hapterophycus canaliculatus Oshoro5f female)
CGGCGGCCCAAGCGAGTCCGCCGCTCCCGGCGGCGGCGGCGGCGGCGGCG
GCGAAGACGACGCTCTTCGCGGCGGCGATCGAGACGGGGTGGGGGACGCA
GACGGAGAAGACATCATGATCTCCACGAGAGGGCCGTCCGAAGACCTCTC
GCTCCACTCCGCGCCGCCCCCACCGCCGCCCCCGCCGCCGAAGGCGTGGC
GGGCACGGCGTCGCTCTTCCTTATCCCTGCCCCTGGCCGGTGCGCCCTCC
GACGGTGCTCGATAGACGTCCACGGAAACAATGCGGCCAGCGGCAACTCC
TGCTACTGCCCCTTCTCTGTCGCCGCCGGCACCAGCGCCTCCACTGCTGC
GCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11365:507..860+

>mRNA_H-canaliculatus_F_contig11365.1216.1 ID=mRNA_H-canaliculatus_F_contig11365.1216.1|Name=mRNA_H-canaliculatus_F_contig11365.1216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11365:507..860+ (Hapterophycus canaliculatus Oshoro5f female)
CGGCGGCCCAAGCGAGTCCGCCGCTCCCGGCGGCGGCGGCGGCGGCGGCG
GCGAAGACGACGCTCTTCGCGGCGGCGATCGAGACGGGGTGGGGGACGCA
GACGGAGAAGACATCATGATCTCCACGAGAGGGCCGTCCGAAGACCTCTC
GCTCCACTCCGCGCCGCCCCCACCGCCGCCCCCGCCGCCGAAGGCGTGGC
GGGCACGGCGTCGCTCTTCCTTATCCCTGCCCCTGGCCGGTGCGCCCTCC
GACGGTGCTCGATAGACGTCCACGGAAACAATGCGGCCAGCGGCAACTCC
TGCTACTGCCCCTTCTCTGTCGCCGCCGGCACCAGCGCCTCCACTGCTGC
GCCTCGGCGGCCCAAGCGAGTCCGCCGCTCCCGGCGGCGGCGGCGGCGGC
GGCGGCGAAGACGACGCTCTTCGCGGCGGCGATCGAGACGGGGTGGGGGA
CGCAGACGGAGAAGACATCATGATCTCCACGAGAGGGCCGTCCGAAGACC
TCTCGCTCCACTCCGCGCCGCCCCCACCGCCGCCCCCGCCGCCGAAGGCG
TGGCGGGCACGGCGTCGCTCTTCCTTATCCCTGCCCCTGGCCGGTGCGCC
CTCCGACGGTGCTCGATAGACGTCCACGGAAACAATGCGGCCAGCGGCAA
CTCCTGCTACTGCCCCTTCTCTGTCGCCGCCGGCACCAGCGCCTCCACTG
CTGCGCCT
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