mRNA_H-canaliculatus_F_contig11341.1206.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11341.1206.1
Unique NamemRNA_H-canaliculatus_F_contig11341.1206.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11341.1206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11341contigH-canaliculatus_F_contig11341:582..1835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1256
Cds size1254
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.4233615-CDS-H-canaliculatus_F_contig11341:581..18351622928818.4233615-CDS-H-canaliculatus_F_contig11341:581..1835Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11341 582..1835 +
1696845576.5989544-CDS-H-canaliculatus_F_contig11341:581..18351696845576.5989544-CDS-H-canaliculatus_F_contig11341:581..1835Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11341 582..1835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11341.1206.1prot_H-canaliculatus_F_contig11341.1206.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11341 582..1835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11341.1206.1

>prot_H-canaliculatus_F_contig11341.1206.1 ID=prot_H-canaliculatus_F_contig11341.1206.1|Name=mRNA_H-canaliculatus_F_contig11341.1206.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=418bp
AASADTAGVSPPVAADAADSASSRPSSLSAPTVPGGASSEADTAAGVAVV
EITVTAFLDGFDGCLGSVSGEERGGAPGCGGEPLSGEGNRPREGTFGNGP
SSSASSTAVDPRQIGVVLFSLSAPEKGGGGGGDGEKVAEVCVPLVWPLAA
EDREGGNDDGAGGGSVRCCSDDGGAGAGGDDSGDDSDDGPVPDEDAAGKG
QRGRKRDQGAHLRRRQRAEELVPVQGKMTVWDPQLWWPRGMGWQRPQQQQ
QEQEEYQQQKQLLYMLQVDWYPGTGVSCPPEGAPAARMPVRPARTPDPAA
DPAAGDREADAGAVSGAGVGVGVGLAFARGGAMAAPQSSVRRKIGLRKVE
LVREPLTPAGTLAAPTVTPGVVSGGDFQAEDAVPGAAAGAIQASEWATVA
AAGAGAASTVPAEETAGT
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mRNA from alignment at H-canaliculatus_F_contig11341:582..1835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11341.1206.1 ID=mRNA_H-canaliculatus_F_contig11341.1206.1|Name=mRNA_H-canaliculatus_F_contig11341.1206.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1254bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11341:582..1835+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGCCTCTGCCGACACGGCCGGTGTCTCGCCACCCGTCGCCGCCGACGC
AGCCGACTCAGCCTCTTCTCGCCCGAGCTCCCTCTCCGCTCCAACTGTTC
CAGGCGGCGCGTCCTCTGAAGCCGACACCGCTGCCGGTGTTGCCGTCGTG
GAGATCACGGTAACGGCCTTTCTAGATGGCTTCGATGGCTGCTTGGGAAG
CGTTTCCGGAGAGGAGCGGGGAGGGGCGCCTGGTTGCGGCGGAGAGCCAC
TGAGCGGAGAAGGCAATCGTCCTCGGGAGGGGACATTTGGCAACGGTCCC
TCCTCGTCGGCCTCCTCGACGGCGGTAGATCCCCGTCAGATAGGTGTGGT
TTTGTTTTCACTTTCCGCACCAGAGAAGGGCGGCGGTGGCGGTGGTGACG
GGGAAAAGGTGGCCGAGGTCTGCGTCCCCCTCGTTTGGCCGCTGGCCGCT
GAGGACCGGGAGGGTGGTAATGATGATGGTGCTGGTGGTGGAAGCGTTCG
TTGTTGTAGTGATGATGGTGGTGCTGGTGCTGGTGGAGATGATAGCGGTG
ATGATAGCGACGATGGCCCGGTGCCCGATGAAGATGCCGCAGGAAAGGGG
CAACGCGGACGAAAGAGAGACCAAGGCGCACACCTTCGCCGCCGGCAGCG
TGCGGAGGAACTCGTGCCGGTTCAGGGGAAAATGACGGTGTGGGATCCAC
AGCTTTGGTGGCCGCGGGGAATGGGGTGGCAGCGTCCACAGCAGCAGCAG
CAGGAGCAGGAAGAATATCAACAACAGAAGCAGTTGCTCTACATGCTTCA
GGTTGACTGGTACCCGGGGACTGGCGTGTCCTGCCCCCCCGAGGGAGCTC
CGGCGGCAAGGATGCCGGTACGGCCTGCTCGCACTCCTGATCCTGCCGCT
GATCCTGCTGCTGGTGACCGCGAAGCCGATGCCGGTGCCGTTTCCGGTGC
CGGCGTCGGCGTCGGCGTCGGTCTTGCCTTTGCTCGTGGCGGTGCTATGG
CTGCGCCGCAGAGCAGCGTGCGGCGGAAGATCGGGCTTCGGAAGGTCGAA
CTTGTTCGGGAGCCTCTGACACCGGCGGGGACACTGGCCGCACCGACGGT
AACCCCGGGGGTGGTAAGTGGTGGGGACTTCCAGGCAGAAGATGCCGTAC
CGGGGGCTGCAGCAGGCGCTATCCAAGCGTCGGAGTGGGCGACGGTCGCG
GCAGCGGGAGCGGGAGCTGCCAGCACGGTGCCCGCAGAGGAGACGGCGGG
GACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11341:582..1835+

>mRNA_H-canaliculatus_F_contig11341.1206.1 ID=mRNA_H-canaliculatus_F_contig11341.1206.1|Name=mRNA_H-canaliculatus_F_contig11341.1206.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2508bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11341:582..1835+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGCCTCTGCCGACACGGCCGGTGTCTCGCCACCCGTCGCCGCCGACGC
AGCCGACTCAGCCTCTTCTCGCCCGAGCTCCCTCTCCGCTCCAACTGTTC
CAGGCGGCGCGTCCTCTGAAGCCGACACCGCTGCCGGTGTTGCCGTCGTG
GAGATCACGGTAACGGCCTTTCTAGATGGCTTCGATGGCTGCTTGGGAAG
CGTTTCCGGAGAGGAGCGGGGAGGGGCGCCTGGTTGCGGCGGAGAGCCAC
TGAGCGGAGAAGGCAATCGTCCTCGGGAGGGGACATTTGGCAACGGTCCC
TCCTCGTCGGCCTCCTCGACGGCGGTAGATCCCCGTCAGATAGGTGTGGT
TTTGTTTTCACTTTCCGCACCAGAGAAGGGCGGCGGTGGCGGTGGTGACG
GGGAAAAGGTGGCCGAGGTCTGCGTCCCCCTCGTTTGGCCGCTGGCCGCT
GAGGACCGGGAGGGTGGTAATGATGATGGTGCTGGTGGTGGAAGCGTTCG
TTGTTGTAGTGATGATGGTGGTGCTGGTGCTGGTGGAGATGATAGCGGTG
ATGATAGCGACGATGGCCCGGTGCCCGATGAAGATGCCGCAGGAAAGGGG
CAACGCGGACGAAAGAGAGACCAAGGCGCACACCTTCGCCGCCGGCAGCG
TGCGGAGGAACTCGTGCCGGTTCAGGGGAAAATGACGGTGTGGGATCCAC
AGCTTTGGTGGCCGCGGGGAATGGGGTGGCAGCGTCCACAGCAGCAGCAG
CAGGAGCAGGAAGAATATCAACAACAGAAGCAGTTGCTCTACATGCTTCA
GGTTGACTGGTACCCGGGGACTGGCGTGTCCTGCCCCCCCGAGGGAGCTC
CGGCGGCAAGGATGCCGGTACGGCCTGCTCGCACTCCTGATCCTGCCGCT
GATCCTGCTGCTGGTGACCGCGAAGCCGATGCCGGTGCCGTTTCCGGTGC
CGGCGTCGGCGTCGGCGTCGGTCTTGCCTTTGCTCGTGGCGGTGCTATGG
CTGCGCCGCAGAGCAGCGTGCGGCGGAAGATCGGGCTTCGGAAGGTCGAA
CTTGTTCGGGAGCCTCTGACACCGGCGGGGACACTGGCCGCACCGACGGT
AACCCCGGGGGTGGTAAGTGGTGGGGACTTCCAGGCAGAAGATGCCGTAC
CGGGGGCTGCAGCAGGCGCTATCCAAGCGTCGGAGTGGGCGACGGTCGCG
GCAGCGGGAGCGGGAGCTGCCAGCACGGTGCCCGCAGAGGAGACGGCGGG
GACGGCTGCCTCTGCCGACACGGCCGGTGTCTCGCCACCCGTCGCCGCCG
ACGCAGCCGACTCAGCCTCTTCTCGCCCGAGCTCCCTCTCCGCTCCAACT
GTTCCAGGCGGCGCGTCCTCTGAAGCCGACACCGCTGCCGGTGTTGCCGT
CGTGGAGATCACGGTAACGGCCTTTCTAGATGGCTTCGATGGCTGCTTGG
GAAGCGTTTCCGGAGAGGAGCGGGGAGGGGCGCCTGGTTGCGGCGGAGAG
CCACTGAGCGGAGAAGGCAATCGTCCTCGGGAGGGGACATTTGGCAACGG
TCCCTCCTCGTCGGCCTCCTCGACGGCGGTAGATCCCCGTCAGATAGGTG
TGGTTTTGTTTTCACTTTCCGCACCAGAGAAGGGCGGCGGTGGCGGTGGT
GACGGGGAAAAGGTGGCCGAGGTCTGCGTCCCCCTCGTTTGGCCGCTGGC
CGCTGAGGACCGGGAGGGTGGTAATGATGATGGTGCTGGTGGTGGAAGCG
TTCGTTGTTGTAGTGATGATGGTGGTGCTGGTGCTGGTGGAGATGATAGC
GGTGATGATAGCGACGATGGCCCGGTGCCCGATGAAGATGCCGCAGGAAA
GGGGCAACGCGGACGAAAGAGAGACCAAGGCGCACACCTTCGCCGCCGGC
AGCGTGCGGAGGAACTCGTGCCGGTTCAGGGGAAAATGACGGTGTGGGAT
CCACAGCTTTGGTGGCCGCGGGGAATGGGGTGGCAGCGTCCACAGCAGCA
GCAGCAGGAGCAGGAAGAATATCAACAACAGAAGCAGTTGCTCTACATGC
TTCAGGTTGACTGGTACCCGGGGACTGGCGTGTCCTGCCCCCCCGAGGGA
GCTCCGGCGGCAAGGATGCCGGTACGGCCTGCTCGCACTCCTGATCCTGC
CGCTGATCCTGCTGCTGGTGACCGCGAAGCCGATGCCGGTGCCGTTTCCG
GTGCCGGCGTCGGCGTCGGCGTCGGTCTTGCCTTTGCTCGTGGCGGTGCT
ATGGCTGCGCCGCAGAGCAGCGTGCGGCGGAAGATCGGGCTTCGGAAGGT
CGAACTTGTTCGGGAGCCTCTGACACCGGCGGGGACACTGGCCGCACCGA
CGGTAACCCCGGGGGTGGTAAGTGGTGGGGACTTCCAGGCAGAAGATGCC
GTACCGGGGGCTGCAGCAGGCGCTATCCAAGCGTCGGAGTGGGCGACGGT
CGCGGCAGCGGGAGCGGGAGCTGCCAGCACGGTGCCCGCAGAGGAGACGG
CGGGGACG
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