mRNA_H-canaliculatus_F_contig1133.1195.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1133.1195.1
Unique NamemRNA_H-canaliculatus_F_contig1133.1195.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1133.1195.1 vs. uniprot
Match: D7FPQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ5_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 6.150e-41
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 3
Query:   21 IKRFADFLYRRGELQEYMELLVRNFNAAACSGLMCKDTINVGWDGRIFDCDFNQQLELGMGTAGTNAGASEKLRATQ 251
            IKRFADFLYRRGELQEYMELLVRNFN AACSGLMCKDTINVGWDGR+FDCDFNQQL LGMGTAGTNAGASEKL A +
Sbjct:  351 IKRFADFLYRRGELQEYMELLVRNFNTAACSGLMCKDTINVGWDGRVFDCDFNQQLGLGMGTAGTNAGASEKLLAVK 427          
BLAST of mRNA_H-canaliculatus_F_contig1133.1195.1 vs. uniprot
Match: A0A836C7A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7A2_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.070e-32
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = 3
Query:   21 IKRFADFLYRRGELQEYMELLVRNFNAAACSGLMCKDTINVGWDGRIFDCDFNQQLELGMGTAGTNAGASEKLR 242
            IKRFADFLYRRGEL++YMELLVRNFN AA  GLMCKDT++VGWDGRIFDCDFNQQL LGMGTAGTN  A   L+
Sbjct:  319 IKRFADFLYRRGELKDYMELLVRNFNPAATKGLMCKDTVSVGWDGRIFDCDFNQQLGLGMGTAGTNEDAPFDLK 392          
BLAST of mRNA_H-canaliculatus_F_contig1133.1195.1 vs. uniprot
Match: A0A7S4NJP5_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NJP5_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 1.330e-26
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 3
Query:   21 IKRFADFLYRRGELQEYMELLVRNFNAAACSGLMCKDTINVGWDGRIFDCDFNQQLELGMGTAG 212
            IKRFADFLYRRGEL+EYMELLVRNFN +   GLMC+DTI+VGWDG+I+DCDFNQQL +  GT G
Sbjct:  336 IKRFADFLYRRGELEEYMELLVRNFNPSTTEGLMCRDTISVGWDGKIYDCDFNQQLSMDAGTLG 399          
BLAST of mRNA_H-canaliculatus_F_contig1133.1195.1 vs. uniprot
Match: A0A8B7Y591_ACAPL (uncharacterized protein LOC110978040 isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y591_ACAPL)

HSP 1 Score: 103 bits (256), Expect = 5.850e-24
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = 3
Query:   21 IKRFADFLYRRGELQEYMELLVRNFNAAACSGLMCKDTINVGWDGRIFDCDFNQQLELGM 200
            IKRFADFLYRR EL++YM+LLVRNFN A+  GLMC++ +NV WDGR+FDCDFNQQL++GM
Sbjct:  372 IKRFADFLYRRNELEDYMQLLVRNFNPASVEGLMCRNHLNVNWDGRLFDCDFNQQLDMGM 431          
BLAST of mRNA_H-canaliculatus_F_contig1133.1195.1 vs. uniprot
Match: UPI0018D6A746 (uncharacterized protein LOC119721737 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6A746)

HSP 1 Score: 103 bits (256), Expect = 6.020e-24
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = 3
Query:   21 IKRFADFLYRRGELQEYMELLVRNFNAAACSGLMCKDTINVGWDGRIFDCDFNQQLELGM 200
            IKRFADFLYRR EL++YM+LLVRNFN A+  GLMC++ +NV WDGR+FDCDFNQQL++GM
Sbjct:  379 IKRFADFLYRRNELEDYMQLLVRNFNPASVEGLMCRNHLNVNWDGRLFDCDFNQQLDMGM 438          
BLAST of mRNA_H-canaliculatus_F_contig1133.1195.1 vs. uniprot
Match: B7G1J5_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1J5_PHATC)

HSP 1 Score: 99.8 bits (247), Expect = 1.840e-23
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 3
Query:   21 IKRFADFLYRRGELQEYMELLVRNFNAAACSGLMCKDTINVGWDGRIFDCDFNQQLELGMG 203
            IKRFADFL+RRGELQ+YMELLVRNFNA     +MC +T++V WDG++FDCDFNQQL  GMG
Sbjct:  213 IKRFADFLHRRGELQDYMELLVRNFNAGTIESVMCVNTVSVRWDGKVFDCDFNQQLGYGMG 273          
BLAST of mRNA_H-canaliculatus_F_contig1133.1195.1 vs. uniprot
Match: A0A2G8KUY2_STIJA (DUF3641 domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KUY2_STIJA)

HSP 1 Score: 101 bits (251), Expect = 2.300e-23
Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 3
Query:   21 IKRFADFLYRRGELQEYMELLVRNFNAAACSGLMCKDTINVGWDGRIFDCDFNQQLELGM 200
            IKRFADFLYRR ELQ YME+LVRNFNAA+  GLMC++ I+VGWDG +FDCDFNQQL++ M
Sbjct:  339 IKRFADFLYRRNELQSYMEVLVRNFNAASLQGLMCRNYISVGWDGSLFDCDFNQQLDIPM 398          
BLAST of mRNA_H-canaliculatus_F_contig1133.1195.1 vs. uniprot
Match: A0A7S1BVR4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVR4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.520e-23
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 3
Query:   21 IKRFADFLYRRGELQEYMELLVRNFNAAACSGLMCKDTINVGWDGRIFDCDFNQQLELGMGTAG 212
            IKRFADFLYRRGELQEYMELLVRNFN     GLMC++T++VG DG ++DCDFNQQL L +G  G
Sbjct:  227 IKRFADFLYRRGELQEYMELLVRNFNTDTIEGLMCRNTVSVGHDGSLYDCDFNQQLGLVIGNGG 290          
BLAST of mRNA_H-canaliculatus_F_contig1133.1195.1 vs. uniprot
Match: L1IC20_GUITC (Uncharacterized protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1IC20_GUITC)

HSP 1 Score: 100 bits (250), Expect = 3.260e-23
Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 3
Query:   21 IKRFADFLYRRGELQEYMELLVRNFNAAACSGLMCKDTINVGWDGRIFDCDFNQQLELGM 200
            IKRFADFLYRRGELQEYM+LLVRNFN A   GLMC + ++VG+DG+++DCDFNQQL LGM
Sbjct:  347 IKRFADFLYRRGELQEYMDLLVRNFNLATVDGLMCTNLVSVGYDGKMYDCDFNQQLALGM 406          
BLAST of mRNA_H-canaliculatus_F_contig1133.1195.1 vs. uniprot
Match: A0A7S4RTX3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RTX3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.130e-23
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 3
Query:   21 IKRFADFLYRRGELQEYMELLVRNFNAAACSGLMCKDTINVGWDGRIFDCDFNQQLELGMGTAGTN 218
            IKRFADFLYRR EL++YM+LLVRNFN      LMC +TI+VG+DG+IFDCDFNQQL  G GT  T+
Sbjct:  136 IKRFADFLYRRDELKDYMDLLVRNFNVDTTKSLMCLNTISVGYDGKIFDCDFNQQLGYGTGTVSTS 201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1133.1195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPQ5_ECTSI6.150e-4192.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C7A2_9STRA1.070e-3281.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4NJP5_9EUKA1.330e-2676.56Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A8B7Y591_ACAPL5.850e-2473.33uncharacterized protein LOC110978040 isoform X1 n=... [more]
UPI0018D6A7466.020e-2473.33uncharacterized protein LOC119721737 n=1 Tax=Patir... [more]
B7G1J5_PHATC1.840e-2372.13Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A2G8KUY2_STIJA2.300e-2375.00DUF3641 domain-containing protein n=1 Tax=Stichopu... [more]
A0A7S1BVR4_9STRA2.520e-2371.88Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
L1IC20_GUITC3.260e-2375.00Uncharacterized protein n=2 Tax=Geminigeraceae Tax... [more]
A0A7S4RTX3_9STRA7.130e-2368.18Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1133contigH-canaliculatus_F_contig1133:2993..3431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928816.9002314-CDS-H-canaliculatus_F_contig1133:2992..31191622928816.9002314-CDS-H-canaliculatus_F_contig1133:2992..3119Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1133 2993..3119 +
1696845575.9246206-CDS-H-canaliculatus_F_contig1133:2992..31191696845575.9246206-CDS-H-canaliculatus_F_contig1133:2992..3119Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1133 2993..3119 +
1622928816.9120767-CDS-H-canaliculatus_F_contig1133:3303..34311622928816.9120767-CDS-H-canaliculatus_F_contig1133:3303..3431Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1133 3304..3431 +
1696845575.9325368-CDS-H-canaliculatus_F_contig1133:3303..34311696845575.9325368-CDS-H-canaliculatus_F_contig1133:3303..3431Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1133 3304..3431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1133.1195.1prot_H-canaliculatus_F_contig1133.1195.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1133 2993..3431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1133.1195.1

>prot_H-canaliculatus_F_contig1133.1195.1 ID=prot_H-canaliculatus_F_contig1133.1195.1|Name=mRNA_H-canaliculatus_F_contig1133.1195.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=85bp
MGIFVPPSSASPTSCIGGESCKSTWSCWCATSTRRHAAGSCARIPSMSDG
MGASSTATLTSSWNWGWARLERMLVPRKSCVLPR*
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mRNA from alignment at H-canaliculatus_F_contig1133:2993..3431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1133.1195.1 ID=mRNA_H-canaliculatus_F_contig1133.1195.1|Name=mRNA_H-canaliculatus_F_contig1133.1195.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=439bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1133:2993..3431+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTATTTTCGTGCCTCCATCAAGCGCTTCGCCGACTTCCTGTATCGG AGGGGAGAGCTGCAAGAGTACATGGAGCTGCTGGTGCGCAACTTCAACGC GGCGGCATGCAGCGGGCTCATGTGCAAGTAAGTCGGCATTCTTCGTACCG GAGTAATGTACTTGCGAAATAGTGTCCATGCGGATTAAGATAACGCAGAC CGGGCACTGTAAATTCCTGTTGGTCGGCACCAAGACCTACAACACAGGGC ACCGATTTGAGCAGTATTTAACGTTCGTCTGCTTCGTCCTCCTGGCCACT CTGCCTCTCAGGGATACCATCAATGTCGGATGGGATGGGCGCATCTTCGA CTGCGACTTTAACCAGCAGTTGGAATTGGGGATGGGCACGGCTGGAACGA ATGCTGGTGCCTCGGAAAAGCTGCGTGCTACCCAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1133:2993..3431+

>mRNA_H-canaliculatus_F_contig1133.1195.1 ID=mRNA_H-canaliculatus_F_contig1133.1195.1|Name=mRNA_H-canaliculatus_F_contig1133.1195.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1133:2993..3431+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTATTTTCGTGCCTCCATCAAGCGCTTCGCCGACTTCCTGTATCGG
AGGGGAGAGCTGCAAGAGTACATGGAGCTGCTGGTGCGCAACTTCAACGC
GGCGGCATGCAGCGGGCTCATGTGCAAATGGGTATTTTCGTGCCTCCATC
AAGCGCTTCGCCGACTTCCTGTATCGGAGGGGAGAGCTGCAAGAGTACAT
GGAGCTGCTGGTGCGCAACTTCAACGCGGCGGCATGCAGCGGGCTCATGT
GCAAGGATACCATCAATGTCGGATGGGATGGGCGCATCTTCGACTGCGAC
TTTAACCAGCAGTTGGAATTGGGGATGGGCACGGCTGGAACGAATGCTGG
TGCCTCGGAAAAGCTGCGTGCTACCCAGGTGAGGATACCATCAATGTCGG
ATGGGATGGGCGCATCTTCGACTGCGACTTTAACCAGCAGTTGGAATTGG
GGATGGGCACGGCTGGAACGAATGCTGGTGCCTCGGAAAAGCTGCGTGCT
ACCCAGGTGA
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