mRNA_H-canaliculatus_F_contig11313.1188.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11313.1188.1
Unique NamemRNA_H-canaliculatus_F_contig11313.1188.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11313.1188.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.270e-11
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   10 RYAPFRALLIEDVFGLLLKMPTGRRQLRTFRIAH 111
            +Y  FR LLIEDVFGLLLKMPTGRRQLRTFRIAH
Sbjct:  701 KYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH 734
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BLAST of mRNA_H-canaliculatus_F_contig11313.1188.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.290e-11
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   10 RYAPFRALLIEDVFGLLLKMPTGRRQLRTFRIAH 111
            +Y  FR LLIEDVFGLLLKMPTGRRQLRTFRIAH
Sbjct:  784 KYVSFRPLLIEDVFGLLLKMPTGRRQLRTFRIAH 817
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BLAST of mRNA_H-canaliculatus_F_contig11313.1188.1 vs. uniprot
Match: A0A835Z2V2_9STRA (Sister chromatid cohesion protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 7.700e-6
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    4 FARYAPFRALLIEDVFGLLLKMPTGRRQLRTFRIA 108
            F  + P R LL++D+FGLLLK+PT +RQLRTF++A
Sbjct:  345 FVWHEPHRKLLLDDIFGLLLKLPTTKRQLRTFKLA 379
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BLAST of mRNA_H-canaliculatus_F_contig11313.1188.1 vs. uniprot
Match: A0A024TYL2_9STRA (Sister chromatid cohesion protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TYL2_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.690e-5
Identity = 19/36 (52.78%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    4 FARYAPFRALLIEDVFGLLLKMPTGRRQLRTFRIAH 111
            F  Y   RALLI+D+F +LLK+P+ +R LRTF+++H
Sbjct:  401 FLHYPTHRALLIDDIFSVLLKLPSNKRNLRTFKLSH 436
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BLAST of mRNA_H-canaliculatus_F_contig11313.1188.1 vs. uniprot
Match: A0A3R6Z4N6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Z4N6_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.710e-5
Identity = 19/36 (52.78%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    4 FARYAPFRALLIEDVFGLLLKMPTGRRQLRTFRIAH 111
            F  Y   RALLI+D+F +LLK+P+ +R LRTF+++H
Sbjct:  423 FLHYPTHRALLIDDIFSVLLKLPSNKRNLRTFKLSH 458
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11313.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FSV8_ECTSI5.270e-1188.24Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A6H5JLU6_9PHAE5.290e-1188.24PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z2V2_9STRA7.700e-660.00Sister chromatid cohesion protein n=1 Tax=Tribonem... [more]
A0A024TYL2_9STRA3.690e-552.78Sister chromatid cohesion protein n=3 Tax=Aphanomy... [more]
A0A3R6Z4N6_9STRA3.710e-552.78Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11313contigH-canaliculatus_F_contig11313:3786..3896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog2880.D7FSV8
KEGG koko:K06672
KEGG Pathwayko04111,map04111
EggNOG free text desc.cohesin loading
EggNOG OGsKOG1020@1,KOG1020@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928816.0241-CDS-H-canaliculatus_F_contig11313:3785..38961622928816.0241-CDS-H-canaliculatus_F_contig11313:3785..3896Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11313 3786..3896 -
1696845575.4615915-CDS-H-canaliculatus_F_contig11313:3785..38961696845575.4615915-CDS-H-canaliculatus_F_contig11313:3785..3896Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11313 3786..3896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11313.1188.1prot_H-canaliculatus_F_contig11313.1188.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11313 3786..3896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11313.1188.1

>prot_H-canaliculatus_F_contig11313.1188.1 ID=prot_H-canaliculatus_F_contig11313.1188.1|Name=mRNA_H-canaliculatus_F_contig11313.1188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=37bp
FFARYAPFRALLIEDVFGLLLKMPTGRRQLRTFRIAH
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mRNA from alignment at H-canaliculatus_F_contig11313:3786..3896-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11313.1188.1 ID=mRNA_H-canaliculatus_F_contig11313.1188.1|Name=mRNA_H-canaliculatus_F_contig11313.1188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=111bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11313:3786..3896- (Hapterophycus canaliculatus Oshoro5f female)
TTTTTCGCCAGGTACGCTCCCTTCCGCGCCCTGCTGATCGAGGACGTCTT
CGGCCTGCTGCTCAAGATGCCCACAGGGAGGCGGCAGCTCCGGACGTTCC
GCATCGCCCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11313:3786..3896-

>mRNA_H-canaliculatus_F_contig11313.1188.1 ID=mRNA_H-canaliculatus_F_contig11313.1188.1|Name=mRNA_H-canaliculatus_F_contig11313.1188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=222bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11313:3786..3896- (Hapterophycus canaliculatus Oshoro5f female)
TTTTTCGCCAGGTACGCTCCCTTCCGCGCCCTGCTGATCGAGGACGTCTT
CGGCCTGCTGCTCAAGATGCCCACAGGGAGGCGGCAGCTCCGGACGTTCC
GCATCGCCCACTTTTTCGCCAGGTACGCTCCCTTCCGCGCCCTGCTGATC
GAGGACGTCTTCGGCCTGCTGCTCAAGATGCCCACAGGGAGGCGGCAGCT
CCGGACGTTCCGCATCGCCCAC
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