mRNA_H-canaliculatus_F_contig11301.1177.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11301.1177.1
Unique NamemRNA_H-canaliculatus_F_contig11301.1177.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11301.1177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11301contigH-canaliculatus_F_contig11301:1141..2285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size668
Cds size438
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11301.1177.1prot_H-canaliculatus_F_contig11301.1177.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11301 1141..2056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928814.5694623-CDS-H-canaliculatus_F_contig11301:1140..14291622928814.5694623-CDS-H-canaliculatus_F_contig11301:1140..1429Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11301 1141..1429 -
1696845574.9105158-CDS-H-canaliculatus_F_contig11301:1140..14291696845574.9105158-CDS-H-canaliculatus_F_contig11301:1140..1429Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11301 1141..1429 -
1622928814.583771-CDS-H-canaliculatus_F_contig11301:1907..20561622928814.583771-CDS-H-canaliculatus_F_contig11301:1907..2056Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11301 1908..2056 -
1696845574.9243367-CDS-H-canaliculatus_F_contig11301:1907..20561696845574.9243367-CDS-H-canaliculatus_F_contig11301:1907..2056Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11301 1908..2056 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928814.5980103-UTR-H-canaliculatus_F_contig11301:2056..22851622928814.5980103-UTR-H-canaliculatus_F_contig11301:2056..2285Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11301 2057..2285 -
1696845574.933512-UTR-H-canaliculatus_F_contig11301:2056..22851696845574.933512-UTR-H-canaliculatus_F_contig11301:2056..2285Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11301 2057..2285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11301.1177.1

>prot_H-canaliculatus_F_contig11301.1177.1 ID=prot_H-canaliculatus_F_contig11301.1177.1|Name=mRNA_H-canaliculatus_F_contig11301.1177.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=146bp
MAASFIQHHTQRPSVADITVPRHSSMTYTLEDLHASIVRAGARRAGMSNF
GKRMEPVTRHGLESISPPPAGFPGLGPAPCKPRRRHSRRQAPSKKADGSA
AVTASAVATASKTAAAVVVDSEWVWGQGSQKTLVVDVGSGQGMVEK
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mRNA from alignment at H-canaliculatus_F_contig11301:1141..2285-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11301.1177.1 ID=mRNA_H-canaliculatus_F_contig11301.1177.1|Name=mRNA_H-canaliculatus_F_contig11301.1177.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1145bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11301:1141..2285- (Hapterophycus canaliculatus Oshoro5f female)
GCCCAACAACACGTGCACCACGCGACCTCTACTGGAAACTGCTACGTAGC
CAGGGTCTGCTCTGTCCGGACAAGCGTCATAAAACGCCCAATCGCGCGCG
CTCAATATCCGACCACCACGTCCATCTTTGCAAGGAGTCGTGGCTGGTTT
ACATGGATCGGGGTGGACCACGACGGTGAAAACGAACACAGTAAAGGGAT
CTAGAGAACTGTGCTCCTGCAGCAGCATCATGGCAGCAAGCTTCATTCAG
CACCACACCCAGAGGCCATCCGTAGCCGACATCACCGTCCCGAGGCATTC
GAGCATGACCTACACCCTCGAAGATTTGCACGCGTCGATCGTACGAGCGG
GAGCACGAAGAGCGGGGATGTCTAACTTGTGAGTGAGAGTCGTGAGTGAA
TTGTGGGTCGATCATGTTGTCGCTGCCTCTTGCCATGGGTATTTTTTTTG
CGCGAGAGCCGCGTGTCGATGGATTTTCGCCTTCCTGGCCCCAGGGGGTA
CGATTAGCGTCGTTTTGCTGTCTGGGTTTCATCTCCCTACTGGTTGCGGT
AAGGGCGGACCGTCGTATTCAACGCGGCCCCTCCAACCCTCTTTTGTCAC
ATGAACCTACGACTCTCTATCGTGGTTTCCCTCTCGCACCTCCCCACCGA
CCCTCTTACTTTGATGGGAGAGTCGCCCCGTCATCTCTGCCCTTCCGCTG
CTGCTGCCACGCAGATCTCGCGCAATTTTTTTTGTCGCCTCCGGAGCCTG
CGACTTTTAAATCCTTTGATATTGGCCTCTGACTTTAGCCTACTTGTACC
TCTACCCGTGGGGTGTTTTCGCCTCCCTTCAACGTGCCATCCTATCTGTG
CGCAAGCGGGAAAAGGATGGAGCCCGTCACCAGACACGGACTGGAGTCCA
TCTCCCCTCCGCCCGCTGGATTCCCCGGTCTGGGACCAGCACCGTGCAAG
CCTCGACGGAGGCACTCTCGCCGCCAGGCCCCGTCGAAGAAGGCCGATGG
ATCTGCTGCTGTCACTGCTTCCGCTGTTGCTACTGCTTCCAAGACGGCGG
CAGCAGTCGTAGTCGACAGCGAGTGGGTCTGGGGCCAAGGCTCCCAGAAG
ACTCTGGTCGTGGATGTTGGGTCGGGGCAAGGCATGGTTGAGAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11301:1141..2285-

>mRNA_H-canaliculatus_F_contig11301.1177.1 ID=mRNA_H-canaliculatus_F_contig11301.1177.1|Name=mRNA_H-canaliculatus_F_contig11301.1177.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=876bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11301:1141..2285- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCAGCAAGCTTCATTCAGCACCACACCCAGAGGCCATCCGTAGCCGA
CATCACCGTCCCGAGGCATTCGAGCATGACCTACACCCTCGAAGATTTGC
ACGCGTCGATCGTACGAGCGGGAGCACGAAGAGCGGGGATGTCTAACTTA
TGGCAGCAAGCTTCATTCAGCACCACACCCAGAGGCCATCCGTAGCCGAC
ATCACCGTCCCGAGGCATTCGAGCATGACCTACACCCTCGAAGATTTGCA
CGCGTCGATCGTACGAGCGGGAGCACGAAGAGCGGGGATGTCTAACTTCG
GGAAAAGGATGGAGCCCGTCACCAGACACGGACTGGAGTCCATCTCCCCT
CCGCCCGCTGGATTCCCCGGTCTGGGACCAGCACCGTGCAAGCCTCGACG
GAGGCACTCTCGCCGCCAGGCCCCGTCGAAGAAGGCCGATGGATCTGCTG
CTGTCACTGCTTCCGCTGTTGCTACTGCTTCCAAGACGGCGGCAGCAGTC
GTAGTCGACAGCGAGTGGGTCTGGGGCCAAGGCTCCCAGAAGACTCTGGT
CGTGGATGTTGGGTCGGGGCAAGGCATGGTTGAGAAACGGGAAAAGGATG
GAGCCCGTCACCAGACACGGACTGGAGTCCATCTCCCCTCCGCCCGCTGG
ATTCCCCGGTCTGGGACCAGCACCGTGCAAGCCTCGACGGAGGCACTCTC
GCCGCCAGGCCCCGTCGAAGAAGGCCGATGGATCTGCTGCTGTCACTGCT
TCCGCTGTTGCTACTGCTTCCAAGACGGCGGCAGCAGTCGTAGTCGACAG
CGAGTGGGTCTGGGGCCAAGGCTCCCAGAAGACTCTGGTCGTGGATGTTG
GGTCGGGGCAAGGCATGGTTGAGAAA
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