mRNA_H-canaliculatus_F_contig113.1165.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig113.1165.1
Unique NamemRNA_H-canaliculatus_F_contig113.1165.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig113.1165.1 vs. uniprot
Match: A0A6H5L6Q6_9PHAE (Calx-beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q6_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 8.630e-60
Identity = 108/192 (56.25%), Postives = 142/192 (73.96%), Query Frame = 1 
Query:    1 QVILAPGRFE-TPPDVSLSSYAAGQSTTANLSFAISNPIPQNGHIIVTFPSNFTSISTSEVVSWGMDGGFIVDVEAYTVTIHRDGSGGEVQAGSLVTVQLQNGIKTQGFEGATTVFPLVKTTLEDTTISIDEASSWYHAADRPRGLTFTPAIFARSPTVELASLVAGHEGAATVNLSLSNPLPADGNILVEF 573
            +V+L PG F    P V LS+YAAG+  TAN+SF  SNPIP +GH+I+TFPSN TS+  S  ++ GMDGG + +V  YTV + RDG G  V++G+ V+V L + +K Q FEG +  FP++KTTL DT+IS+DEASS +++ DRP G++FTP  F+  PTVEL SLVAGHEG A V ++LSNPLPADGNI +EF
Sbjct:   35 EVLLVPGAFAGVGPTVVLSTYAAGEVGTANVSFITSNPIPSDGHVIITFPSNVTSVDCSVALASGMDGGLVSNVSGYTVDVERDGFGSPVESGAEVSVSLVDCVKNQLFEGESDSFPVLKTTLNDTSISVDEASSAHNSEDRPAGVSFTPGAFSEPPTVELDSLVAGHEGGANVTVALSNPLPADGNIFIEF 226
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BLAST of mRNA_H-canaliculatus_F_contig113.1165.1 vs. uniprot
Match: D7G5B0_ECTSI (Laminin IV type A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B0_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 3.550e-58
Identity = 108/191 (56.54%), Postives = 136/191 (71.20%), Query Frame = 1 
Query:    4 VILAPGRFE-TPPDVSLSSYAAGQSTTANLSFAISNPIPQNGHIIVTFPSNFTSISTSEVVSWGMDGGFIVDVEAYTVTIHRDGSGGEVQAGSLVTVQLQNGIKTQGFEGATTVFPLVKTTLEDTTISIDEASSWYHAADRPRGLTFTPAIFARSPTVELASLVAGHEGAATVNLSLSNPLPADGNILVEF 573
            V   PG F    P V LS+YAAG+  TAN+SF  SNPIP +GH+I+TFPSNFTS+  S  ++ GMDGG + +V  YTV + RDG G  V+ G+ V+V L + +K Q FEG +  FP++KTTL DT IS+DEASS +++ DRP  + FTP  F+  PTVEL SLVAGHEG A V L+LSNPLPADGNI +EF
Sbjct: 1167 VTFTPGAFAGVGPTVVLSAYAAGEVGTANVSFITSNPIPSDGHVIITFPSNFTSVDCSVALASGMDGGLVSNVSGYTVDVERDGFGSAVEPGTEVSVSLVDCVKNQLFEGESDSFPVLKTTLNDTGISVDEASSAHNSEDRPAAVLFTPGAFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEF 1357
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BLAST of mRNA_H-canaliculatus_F_contig113.1165.1 vs. uniprot
Match: A0A432JG40_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A432JG40_9CHLR)

HSP 1 Score: 73.6 bits (179), Expect = 5.550e-12
Identity = 57/167 (34.13%), Postives = 87/167 (52.10%), Query Frame = 1 
Query:   88 LSFAISNPIPQNGHIIVTFPSNFTSISTSEVVSWGMDGGFI-----VDVEAYTVTIHRDGSGGEVQAGSLVTVQLQNGIKTQGFEGATTVFPLVKTTLEDTTISIDEASSWYHAADRPRGLTFTPAIFARSPTVELASLVAGHEGAATVNLSLSNPLPADGNILVEF 573
            ++F IS+P+P +G I +TFPS F  +++    + G DG        V V     TI R G G  + A ++VT+ L + IK     G++  + +  TT  DTT+ +D A        RP     TP +   +  VE ASLVA   G  TV+ + +NPLP +G+I++ F
Sbjct:    6 VTFIISDPLPTDGKIAITFPSGFR-LNSGSATAMGDDGASFDGTTSVSVSGQIATITRVGDGDSIDADTVVTLTLTS-IKNPPVSGSSKSYIIKTTTSLDTTLDVDTAV-------RPD--IITPGVLGFTD-VEPASLVAKAVGRVTVSFTTANPLPGNGDIVITF 160
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BLAST of mRNA_H-canaliculatus_F_contig113.1165.1 vs. uniprot
Match: A0A2A5FEC8_9CHLR (Uncharacterized protein n=5 Tax=Chloroflexi TaxID=200795 RepID=A0A2A5FEC8_9CHLR)

HSP 1 Score: 73.6 bits (179), Expect = 6.480e-12
Identity = 57/167 (34.13%), Postives = 87/167 (52.10%), Query Frame = 1 
Query:   88 LSFAISNPIPQNGHIIVTFPSNFTSISTSEVVSWGMDGGFI-----VDVEAYTVTIHRDGSGGEVQAGSLVTVQLQNGIKTQGFEGATTVFPLVKTTLEDTTISIDEASSWYHAADRPRGLTFTPAIFARSPTVELASLVAGHEGAATVNLSLSNPLPADGNILVEF 573
            ++F IS+P+P +G I +TFPS F  +++    + G DG        V V     TI R G G  + A ++VT+ L + IK     G++  + +  TT  DTT+ +D A        RP     TP +   +  VE ASLVA   G  TV+ + +NPLP +G+I++ F
Sbjct:    3 VTFIISDPLPTDGKIAITFPSGFR-LNSGSATAMGDDGASFDGTTSVSVSGQIATITRVGDGDSIDADTVVTLTLTS-IKNPPVSGSSKSYIIKTTTSLDTTLDVDTAV-------RPD--IITPGVLGFTD-VEPASLVAKAVGRVTVSFTTANPLPGNGDIVITF 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig113.1165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6Q6_9PHAE8.630e-6056.25Calx-beta domain-containing protein n=1 Tax=Ectoca... [more]
D7G5B0_ECTSI3.550e-5856.54Laminin IV type A domain-containing protein n=1 Ta... [more]
A0A432JG40_9CHLR5.550e-1234.13Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A2A5FEC8_9CHLR6.480e-1234.13Uncharacterized protein n=5 Tax=Chloroflexi TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig113contigH-canaliculatus_F_contig113:3..575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue7.9e-52
Seed eggNOG ortholog2880.D7G5B0
KEGG koko:K05849
KEGG TC2.A.19.3
KEGG Pathwayko04020,ko04022,ko04371,ko04740,ko04974,map04020,map04022,map04371,map04740,map04974
EggNOG free text desc.calcium:sodium antiporter activity
EggNOG OGsKOG1306@1,KOG1306@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.8943813-CDS-H-canaliculatus_F_contig113:2..5751622928811.8943813-CDS-H-canaliculatus_F_contig113:2..575Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig113 3..575 -
1696845573.8051243-CDS-H-canaliculatus_F_contig113:2..5751696845573.8051243-CDS-H-canaliculatus_F_contig113:2..575Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig113 3..575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig113.1165.1prot_H-canaliculatus_F_contig113.1165.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig113 3..575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig113.1165.1

>prot_H-canaliculatus_F_contig113.1165.1 ID=prot_H-canaliculatus_F_contig113.1165.1|Name=mRNA_H-canaliculatus_F_contig113.1165.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=191bp
QVILAPGRFETPPDVSLSSYAAGQSTTANLSFAISNPIPQNGHIIVTFPS
NFTSISTSEVVSWGMDGGFIVDVEAYTVTIHRDGSGGEVQAGSLVTVQLQ
NGIKTQGFEGATTVFPLVKTTLEDTTISIDEASSWYHAADRPRGLTFTPA
IFARSPTVELASLVAGHEGAATVNLSLSNPLPADGNILVEF
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mRNA from alignment at H-canaliculatus_F_contig113:3..575-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig113.1165.1 ID=mRNA_H-canaliculatus_F_contig113.1165.1|Name=mRNA_H-canaliculatus_F_contig113.1165.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=573bp|location=Sequence derived from alignment at H-canaliculatus_F_contig113:3..575- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTAATTCTTGCACCCGGACGGTTTGAGACACCTCCAGACGTTTCGCT
ATCCAGCTATGCTGCAGGACAATCGACCACAGCAAATCTCAGCTTCGCTA
TATCCAATCCTATTCCGCAAAACGGACACATCATCGTGACTTTCCCTTCC
AATTTCACGTCGATCAGTACGAGTGAAGTCGTGTCCTGGGGTATGGACGG
TGGTTTCATCGTGGATGTCGAAGCGTACACAGTGACAATACATCGAGATG
GCAGCGGGGGCGAAGTGCAGGCCGGCTCACTGGTAACCGTCCAGTTACAA
AATGGTATCAAAACCCAGGGGTTTGAGGGCGCGACCACCGTCTTTCCACT
CGTTAAGACTACCCTCGAAGACACCACAATCTCCATCGACGAGGCGAGTT
CATGGTACCACGCAGCCGATCGACCACGGGGACTAACTTTCACGCCGGCC
ATCTTCGCCCGGAGTCCGACGGTGGAGCTGGCCAGTCTAGTGGCGGGCCA
CGAGGGAGCGGCGACTGTGAACCTGTCCCTGTCCAACCCTCTGCCCGCCG
ACGGGAATATCCTGGTGGAGTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig113:3..575-

>mRNA_H-canaliculatus_F_contig113.1165.1 ID=mRNA_H-canaliculatus_F_contig113.1165.1|Name=mRNA_H-canaliculatus_F_contig113.1165.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1146bp|location=Sequence derived from alignment at H-canaliculatus_F_contig113:3..575- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTAATTCTTGCACCCGGACGGTTTGAGACACCTCCAGACGTTTCGCT
ATCCAGCTATGCTGCAGGACAATCGACCACAGCAAATCTCAGCTTCGCTA
TATCCAATCCTATTCCGCAAAACGGACACATCATCGTGACTTTCCCTTCC
AATTTCACGTCGATCAGTACGAGTGAAGTCGTGTCCTGGGGTATGGACGG
TGGTTTCATCGTGGATGTCGAAGCGTACACAGTGACAATACATCGAGATG
GCAGCGGGGGCGAAGTGCAGGCCGGCTCACTGGTAACCGTCCAGTTACAA
AATGGTATCAAAACCCAGGGGTTTGAGGGCGCGACCACCGTCTTTCCACT
CGTTAAGACTACCCTCGAAGACACCACAATCTCCATCGACGAGGCGAGTT
CATGGTACCACGCAGCCGATCGACCACGGGGACTAACTTTCACGCCGGCC
ATCTTCGCCCGGAGTCCGACGGTGGAGCTGGCCAGTCTAGTGGCGGGCCA
CGAGGGAGCGGCGACTGTGAACCTGTCCCTGTCCAACCCTCTGCCCGCCG
ACGGGAATATCCTGGTGGAGTTCCAGGTAATTCTTGCACCCGGACGGTTT
GAGACACCTCCAGACGTTTCGCTATCCAGCTATGCTGCAGGACAATCGAC
CACAGCAAATCTCAGCTTCGCTATATCCAATCCTATTCCGCAAAACGGAC
ACATCATCGTGACTTTCCCTTCCAATTTCACGTCGATCAGTACGAGTGAA
GTCGTGTCCTGGGGTATGGACGGTGGTTTCATCGTGGATGTCGAAGCGTA
CACAGTGACAATACATCGAGATGGCAGCGGGGGCGAAGTGCAGGCCGGCT
CACTGGTAACCGTCCAGTTACAAAATGGTATCAAAACCCAGGGGTTTGAG
GGCGCGACCACCGTCTTTCCACTCGTTAAGACTACCCTCGAAGACACCAC
AATCTCCATCGACGAGGCGAGTTCATGGTACCACGCAGCCGATCGACCAC
GGGGACTAACTTTCACGCCGGCCATCTTCGCCCGGAGTCCGACGGTGGAG
CTGGCCAGTCTAGTGGCGGGCCACGAGGGAGCGGCGACTGTGAACCTGTC
CCTGTCCAACCCTCTGCCCGCCGACGGGAATATCCTGGTGGAGTTC
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