mRNA_H-canaliculatus_F_contig1126.1138.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1126.1138.1
Unique NamemRNA_H-canaliculatus_F_contig1126.1138.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1126.1138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1126contigH-canaliculatus_F_contig1126:10139..11228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1090
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1126.1138.1prot_H-canaliculatus_F_contig1126.1138.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1126 10436..11011 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928807.0503893-UTR-H-canaliculatus_F_contig1126:10138..104351622928807.0503893-UTR-H-canaliculatus_F_contig1126:10138..10435Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1126 10139..10435 +
1696845572.2636483-UTR-H-canaliculatus_F_contig1126:10138..104351696845572.2636483-UTR-H-canaliculatus_F_contig1126:10138..10435Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1126 10139..10435 +
1622928807.080442-UTR-H-canaliculatus_F_contig1126:11011..112281622928807.080442-UTR-H-canaliculatus_F_contig1126:11011..11228Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1126 11012..11228 +
1696845572.2816074-UTR-H-canaliculatus_F_contig1126:11011..112281696845572.2816074-UTR-H-canaliculatus_F_contig1126:11011..11228Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1126 11012..11228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928807.0654764-CDS-H-canaliculatus_F_contig1126:10435..110111622928807.0654764-CDS-H-canaliculatus_F_contig1126:10435..11011Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1126 10436..11011 +
1696845572.2722228-CDS-H-canaliculatus_F_contig1126:10435..110111696845572.2722228-CDS-H-canaliculatus_F_contig1126:10435..11011Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1126 10436..11011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1126.1138.1

>prot_H-canaliculatus_F_contig1126.1138.1 ID=prot_H-canaliculatus_F_contig1126.1138.1|Name=mRNA_H-canaliculatus_F_contig1126.1138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=192bp
MHTNIIQTALGASVSTGIIFSRERRGAAGREARQPLYTYAPTPPLSLPPR
LASHLHPVLGAFLHHLKISLPGPSLGGRVDKSTCDYVIIGTSKYRSKVCG
AYHPSPRTPYPKMGIAFFFAIGRGDRLFFSTKTNTRRGIIPQTGYYPTER
VGAGQPAKRSDTIQCHAKMCVGISLCGRTDDSGELRSQVFF*
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mRNA from alignment at H-canaliculatus_F_contig1126:10139..11228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1126.1138.1 ID=mRNA_H-canaliculatus_F_contig1126.1138.1|Name=mRNA_H-canaliculatus_F_contig1126.1138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1090bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1126:10139..11228+ (Hapterophycus canaliculatus Oshoro5f female)
CATCCGTTCTCCGACGGAGGTCCGGCGTCGAACCTCGCGTTGTAGGTAAC
ATATACCGGTCAAACGGCAGGGGGGGCAGCACTTCACACAGTCCGGCACC
AATCTCGACTGCAAAAGCCGATACATTGCACCCTCACACAGGGAGATGCA
ATCAGAGATACAATCAGAGCCCCTGAACCGAGCACTGGCTCATCACCAGT
CACATTGGCGGAAGGAATAATGATTTACTCCAATCATTCGTCGGGCACGT
AAAAAATGTCACGTGCATTTGGTGCCGACCCGCTGTGAGAAGCACCGATG
CACACGAATATCATCCAAACTGCGCTCGGTGCTTCTGTTTCCACGGGCAT
CATCTTCTCTCGTGAACGAAGGGGCGCTGCGGGCAGGGAAGCACGGCAGC
CTCTATATACCTATGCTCCCACCCCCCCCCTGTCGCTGCCACCAAGGCTA
GCATCGCATTTGCACCCTGTGCTCGGTGCTTTTCTTCACCACCTCAAAAT
AAGCCTACCGGGCCCGTCGCTCGGCGGACGAGTTGATAAAAGCACTTGCG
ATTACGTGATAATTGGGACATCAAAGTATAGATCTAAGGTTTGTGGCGCG
TATCACCCCTCACCAAGAACGCCCTACCCAAAAATGGGAATCGCGTTCTT
CTTCGCCATAGGGAGGGGCGACCGGTTGTTCTTCAGCACGAAGACAAACA
CTCGCAGGGGTATCATTCCACAGACAGGGTACTATCCCACAGAAAGAGTA
GGCGCGGGTCAACCAGCAAAAAGAAGTGACACCATACAATGCCATGCTAA
GATGTGCGTCGGTATAAGCTTATGTGGACGCACGGATGATTCTGGCGAAT
TACGATCACAGGTTTTCTTCTAGACAAGCAAGCACGTATTCTGCAACTGA
GCTGCGGGTACCACACAGGAGACTCTGACAAAGCAAGATCAAGGGAATTG
TGCGAACTTATCCGCGTGGTCCATACGTTCATCGTGACCATTCCCTCTGC
ACACCGTGAGCACCAGCGGCGCTTATCTGGCAAGTACAACCCGGTGGTTG
CTGCAGAAAGGCCATTGTCCTGGTGTGGAGATGCGGGCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1126:10139..11228+

>mRNA_H-canaliculatus_F_contig1126.1138.1 ID=mRNA_H-canaliculatus_F_contig1126.1138.1|Name=mRNA_H-canaliculatus_F_contig1126.1138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1152bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1126:10139..11228+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCACACGAATATCATCCAAACTGCGCTCGGTGCTTCTGTTTCCACGGG
CATCATCTTCTCTCGTGAACGAAGGGGCGCTGCGGGCAGGGAAGCACGGC
AGCCTCTATATACCTATGCTCCCACCCCCCCCCTGTCGCTGCCACCAAGG
CTAGCATCGCATTTGCACCCTGTGCTCGGTGCTTTTCTTCACCACCTCAA
AATAAGCCTACCGGGCCCGTCGCTCGGCGGACGAGTTGATAAAAGCACTT
GCGATTACGTGATAATTGGGACATCAAAGTATAGATCTAAGGTTTGTGGC
GCGTATCACCCCTCACCAAGAACGCCCTACCCAAAAATGGGAATCGCGTT
CTTCTTCGCCATAGGGAGGGGCGACCGGTTGTTCTTCAGCACGAAGACAA
ACACTCGCAGGGGTATCATTCCACAGACAGGGTACTATCCCACAGAAAGA
GTAGGCGCGGGTCAACCAGCAAAAAGAAGTGACACCATACAATGCCATGC
TAAGATGTGCGTCGGTATAAGCTTATGTGGACGCACGGATGATTCTGGCG
AATTACGATCACAGGTTTTCTTCTAGATGCACACGAATATCATCCAAACT
GCGCTCGGTGCTTCTGTTTCCACGGGCATCATCTTCTCTCGTGAACGAAG
GGGCGCTGCGGGCAGGGAAGCACGGCAGCCTCTATATACCTATGCTCCCA
CCCCCCCCCTGTCGCTGCCACCAAGGCTAGCATCGCATTTGCACCCTGTG
CTCGGTGCTTTTCTTCACCACCTCAAAATAAGCCTACCGGGCCCGTCGCT
CGGCGGACGAGTTGATAAAAGCACTTGCGATTACGTGATAATTGGGACAT
CAAAGTATAGATCTAAGGTTTGTGGCGCGTATCACCCCTCACCAAGAACG
CCCTACCCAAAAATGGGAATCGCGTTCTTCTTCGCCATAGGGAGGGGCGA
CCGGTTGTTCTTCAGCACGAAGACAAACACTCGCAGGGGTATCATTCCAC
AGACAGGGTACTATCCCACAGAAAGAGTAGGCGCGGGTCAACCAGCAAAA
AGAAGTGACACCATACAATGCCATGCTAAGATGTGCGTCGGTATAAGCTT
ATGTGGACGCACGGATGATTCTGGCGAATTACGATCACAGGTTTTCTTCT
AG
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