mRNA_H-canaliculatus_F_contig11257.1134.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11257.1134.1
Unique NamemRNA_H-canaliculatus_F_contig11257.1134.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11257.1134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11257contigH-canaliculatus_F_contig11257:382..997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size618
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928806.884451-UTR-H-canaliculatus_F_contig11257:381..6611622928806.884451-UTR-H-canaliculatus_F_contig11257:381..661Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11257 382..661 +
1696845572.222281-UTR-H-canaliculatus_F_contig11257:381..6611696845572.222281-UTR-H-canaliculatus_F_contig11257:381..661Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11257 382..661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928806.9035954-CDS-H-canaliculatus_F_contig11257:661..9971622928806.9035954-CDS-H-canaliculatus_F_contig11257:661..997Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11257 662..997 +
1696845572.2328184-CDS-H-canaliculatus_F_contig11257:661..9971696845572.2328184-CDS-H-canaliculatus_F_contig11257:661..997Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11257 662..997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11257.1134.1prot_H-canaliculatus_F_contig11257.1134.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11257 662..997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11257.1134.1

>prot_H-canaliculatus_F_contig11257.1134.1 ID=prot_H-canaliculatus_F_contig11257.1134.1|Name=mRNA_H-canaliculatus_F_contig11257.1134.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
MSHTTFLSSTVLPSVRTYLPLASLAVSLKFQRRGVPAPLPPLLVTRKRGI
ARPRPAGLPALEWGWMRSTRYPAGGLRPARPPCCASATHASVLRCAGNTP
LCSSTRGSESLR
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mRNA from alignment at H-canaliculatus_F_contig11257:382..997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11257.1134.1 ID=mRNA_H-canaliculatus_F_contig11257.1134.1|Name=mRNA_H-canaliculatus_F_contig11257.1134.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=616bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11257:382..997+ (Hapterophycus canaliculatus Oshoro5f female)
GATCAACCGCCCTCCGGGCACGAGATCAAAGGCGAGAGAGACGGAGACAG
TCAGAGAGAGAGAGAGCGCGTGAGACAGAGGCAGCAGTTGGAGTCGTTTT
GTCGCAGCTTTACACGCATCGGCGTACGTGTGTGTCCCGCGCAGCTGAGG
TTTTGTTTTTGTATTTGTTTTAGAAGGAAGAATCACCAGTACCATTTGTT
TTGCTCTGTCCCTTGATTCTGCCGAGCTTTTTCGGCGCGAGCTTTACGGG
GTTTTGCTTCCCTGCTTTTTGGGGCGATGGATGAGTCACACAACTTTCCT
CTCGAGCACGGTGTTACCCTCGGTTCGTACCTACCTACCCTTGGCATCTC
TCGCCGTTTCTCTCAAATTCCAACGCCGTGGGGTTCCTGCACCACTCCCT
CCCCTCCTCGTGACGCGAAAGCGGGGCATCGCACGCCCTCGCCCCGCGGG
GCTGCCCGCCCTAGAGTGGGGGTGGATGCGTAGCACACGATACCCCGCCG
GAGGCTTGCGTCCTGCTCGGCCCCCGTGTTGCGCCTCTGCGACACACGCA
AGTGTACTCCGGTGCGCCGGCAACACGCCTCTTTGCAGCAGCACCCGTGG
ATCGGAAAGCCTGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11257:382..997+

>mRNA_H-canaliculatus_F_contig11257.1134.1 ID=mRNA_H-canaliculatus_F_contig11257.1134.1|Name=mRNA_H-canaliculatus_F_contig11257.1134.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11257:382..997+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGTCACACAACTTTCCTCTCGAGCACGGTGTTACCCTCGGTTCGTAC
CTACCTACCCTTGGCATCTCTCGCCGTTTCTCTCAAATTCCAACGCCGTG
GGGTTCCTGCACCACTCCCTCCCCTCCTCGTGACGCGAAAGCGGGGCATC
GCACGCCCTCGCCCCGCGGGGCTGCCCGCCCTAGAGTGGGGGTGGATGCG
TAGCACACGATACCCCGCCGGAGGCTTGCGTCCTGCTCGGCCCCCGTGTT
GCGCCTCTGCGACACACGCAAGTGTACTCCGGTGCGCCGGCAACACGCCT
CTTTGCAGCAGCACCCGTGGATCGGAAAGCCTGCGGATGAGTCACACAAC
TTTCCTCTCGAGCACGGTGTTACCCTCGGTTCGTACCTACCTACCCTTGG
CATCTCTCGCCGTTTCTCTCAAATTCCAACGCCGTGGGGTTCCTGCACCA
CTCCCTCCCCTCCTCGTGACGCGAAAGCGGGGCATCGCACGCCCTCGCCC
CGCGGGGCTGCCCGCCCTAGAGTGGGGGTGGATGCGTAGCACACGATACC
CCGCCGGAGGCTTGCGTCCTGCTCGGCCCCCGTGTTGCGCCTCTGCGACA
CACGCAAGTGTACTCCGGTGCGCCGGCAACACGCCTCTTTGCAGCAGCAC
CCGTGGATCGGAAAGCCTGCGG
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