mRNA_H-canaliculatus_F_contig1125.1131.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1125.1131.1
Unique NamemRNA_H-canaliculatus_F_contig1125.1131.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1125.1131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1125contigH-canaliculatus_F_contig1125:25407..26625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928806.0992768-CDS-H-canaliculatus_F_contig1125:25406..255881622928806.0992768-CDS-H-canaliculatus_F_contig1125:25406..25588Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1125 25407..25588 +
1696845571.9342394-CDS-H-canaliculatus_F_contig1125:25406..255881696845571.9342394-CDS-H-canaliculatus_F_contig1125:25406..25588Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1125 25407..25588 +
1622928806.1333597-CDS-H-canaliculatus_F_contig1125:26522..266251622928806.1333597-CDS-H-canaliculatus_F_contig1125:26522..26625Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1125 26523..26625 +
1696845571.942441-CDS-H-canaliculatus_F_contig1125:26522..266251696845571.942441-CDS-H-canaliculatus_F_contig1125:26522..26625Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1125 26523..26625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1125.1131.1prot_H-canaliculatus_F_contig1125.1131.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1125 25407..26625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1125.1131.1

>prot_H-canaliculatus_F_contig1125.1131.1 ID=prot_H-canaliculatus_F_contig1125.1131.1|Name=mRNA_H-canaliculatus_F_contig1125.1131.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
RENRPARVPEARPAPERRGNAALGLLEARESRKLWGRPLSARVRRYCKSM
MSKRRFGVCTSAGVTAKFVAPAAASARARYLAGSPTCPQICPLFY
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mRNA from alignment at H-canaliculatus_F_contig1125:25407..26625+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1125.1131.1 ID=mRNA_H-canaliculatus_F_contig1125.1131.1|Name=mRNA_H-canaliculatus_F_contig1125.1131.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1219bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1125:25407..26625+ (Hapterophycus canaliculatus Oshoro5f female)
AGAGAGAATCGACCCGCCAGAGTGCCAGAGGCGAGGCCCGCACCCGAGAG
AAGGGGAAACGCGGCACTTGGTTTGCTGGAAGCTAGAGAGTCCAGAAAGC
TATGGGGAAGGCCCCTTTCAGCACGAGTCCGACGCTACTGCAAGTCGATG
ATGTCGAAGCGGCGGTTCGGTGTTTGCACGAGGTGGGTGGTACGTCACAG
TGAGTCACTCCTAGACCGAAAAGCTAAGAAAATGAACAAGGGAACCCTTC
CAGTACGTACGCTCCAATGCAGCCCGTCAGCGATAGTGGCACCAGCTGCG
GCGGCGGCAGCAGCAGCAGCAGCAGCAAGAATAGTAGCAGCAGCAGCAGC
AGCGGCAGGAGAAAAGTCCCACCCACTCAACAGAGGGACTCGTTGGGACG
GTTGGCTGCTCGGAAACAGGCTAGTCCCTCTACAAGCTTTATTTAGCCGC
TCCCTCCGCCTCCCCCTTCGTGCTGACTCTCCTACTTGAATGTCGGTGAT
GAATGAGTGTGTGCGTCTCTCGTGTAGACCATGCTGCTCCGTACAAGGCC
GCCGTTAAAAGGGCATGCTTGTTTGCGTGCTCCACAGCGGTCTTGCGGCC
GACAGGAACGCGTGCACCGCATGGCCGGTCAAGAAGGACAGCCGGACTTG
CCCCTCATTCAGAACGTGCATGTGTCTTTAGTCCGTATCTCGTTTCACGA
CGGGGTCAGAACAGGAACCAGCAATCTCACCCCGTGTTGCCCTGCCTCCC
TTGGGCAACAGCGAACGAGAGACGGCGGTGTTCTCGTACCCTTCGACCAG
GGGGAGCATGGTTGGCCTTCCCTGTTGCCGGAGGGTCAACCCAAGACTTT
ATCTCTAGGGTCCGAACTTCTTCAGTGTACAGTACAGAGGTGGAAACACG
GGGAGATCGGGCGTCCTTCCCAGAGTATCATGTTGTACTTGTATCAGAAA
AAGGTGGAAAACCAACCATCGCAAAATTGGTCTCATGTTCTTTGAGACAC
CGCTACCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTCCTGCTCCTGCTCCTGCTGCTCCTGCTGGTATAATTGATGCGCAC
GCTTTGCGTTTGGTAGTGCCGGCGTAACGGCTAAATTTGTCGCACCTGCT
GCTGCTTCCGCGAGGGCGAGATACCTGGCCGGGTCACCAACTTGCCCGCA
GATTTGTCCTTTATTTTAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1125:25407..26625+

>mRNA_H-canaliculatus_F_contig1125.1131.1 ID=mRNA_H-canaliculatus_F_contig1125.1131.1|Name=mRNA_H-canaliculatus_F_contig1125.1131.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1125:25407..26625+ (Hapterophycus canaliculatus Oshoro5f female)
AGAGAGAATCGACCCGCCAGAGTGCCAGAGGCGAGGCCCGCACCCGAGAG
AAGGGGAAACGCGGCACTTGGTTTGCTGGAAGCTAGAGAGTCCAGAAAGC
TATGGGGAAGGCCCCTTTCAGCACGAGTCCGACGCTACTGCAAGTCGATG
ATGTCGAAGCGGCGGTTCGGTGTTTGCACGAGAGAGAGAATCGACCCGCC
AGAGTGCCAGAGGCGAGGCCCGCACCCGAGAGAAGGGGAAACGCGGCACT
TGGTTTGCTGGAAGCTAGAGAGTCCAGAAAGCTATGGGGAAGGCCCCTTT
CAGCACGAGTCCGACGCTACTGCAAGTCGATGATGTCGAAGCGGCGGTTC
GGTGTTTGCACGAGTGCCGGCGTAACGGCTAAATTTGTCGCACCTGCTGC
TGCTTCCGCGAGGGCGAGATACCTGGCCGGGTCACCAACTTGCCCGCAGA
TTTGTCCTTTATTTTATTGCCGGCGTAACGGCTAAATTTGTCGCACCTGC
TGCTGCTTCCGCGAGGGCGAGATACCTGGCCGGGTCACCAACTTGCCCGC
AGATTTGTCCTTTATTTTAT
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