mRNA_H-canaliculatus_F_contig11249.1127.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11249.1127.1
Unique NamemRNA_H-canaliculatus_F_contig11249.1127.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11249.1127.1 vs. uniprot
Match: A0A6H5JI95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI95_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.880e-19
Identity = 70/126 (55.56%), Postives = 91/126 (72.22%), Query Frame = 1 
Query:   46 AASRAERAVQSLLRDVRAAAEQCRLKKNAVTEMSRRQKAAEAGRAQLVRDTQIASESASAASQAAMFFEQAARLKRAKEKAALERVRRAQWDAKHASTHARQLAEAERSRQSTYGGGGAVMATAAA 423
            AA RA+    +LL++ +AA      K+ A+ E++ RQK AEAGRA+LVR+TQ AS+SAS ASQAAM +EQ AR+KR +EKAALERV RA+W++K+A+  A QLA  ER RQ  + G  AVMA  AA
Sbjct: 1936 AAVRAKAVADALLKEAQAATAAYHTKERAIVEIATRQKRAEAGRAELVRETQYASDSASKASQAAMHYEQVARVKRGEEKAALERVSRAEWESKNAADKALQLAGLER-RQLAFPG--AVMAAVAA 2058
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11249.1127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI95_9PHAE1.880e-1955.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11249contigH-canaliculatus_F_contig11249:3234..3657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size424
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928806.043595-CDS-H-canaliculatus_F_contig11249:3233..36561622928806.043595-CDS-H-canaliculatus_F_contig11249:3233..3656Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11249 3234..3656 +
1696845571.925494-CDS-H-canaliculatus_F_contig11249:3233..36561696845571.925494-CDS-H-canaliculatus_F_contig11249:3233..3656Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11249 3234..3656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11249.1127.1prot_H-canaliculatus_F_contig11249.1127.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11249 3234..3656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11249.1127.1

>prot_H-canaliculatus_F_contig11249.1127.1 ID=prot_H-canaliculatus_F_contig11249.1127.1|Name=mRNA_H-canaliculatus_F_contig11249.1127.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=141bp
GDSPAAAAAVAAADTAASRAERAVQSLLRDVRAAAEQCRLKKNAVTEMSR
RQKAAEAGRAQLVRDTQIASESASAASQAAMFFEQAARLKRAKEKAALER
VRRAQWDAKHASTHARQLAEAERSRQSTYGGGGAVMATAAA
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mRNA from alignment at H-canaliculatus_F_contig11249:3234..3657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11249.1127.1 ID=mRNA_H-canaliculatus_F_contig11249.1127.1|Name=mRNA_H-canaliculatus_F_contig11249.1127.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=424bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11249:3234..3657+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGACTCGCCCGCGGCGGCGGCGGCAGTCGCGGCCGCCGATACCGCGGC
GTCCCGGGCAGAAAGGGCGGTGCAGTCGCTGCTCAGGGACGTGCGGGCGG
CGGCGGAGCAGTGCCGGCTCAAGAAGAACGCCGTCACGGAAATGAGTAGG
AGGCAGAAGGCGGCGGAGGCCGGCAGGGCGCAGCTCGTGAGGGACACCCA
GATCGCGTCCGAGTCTGCCAGCGCAGCGTCTCAAGCCGCAATGTTCTTCG
AGCAGGCGGCCCGCCTGAAGAGGGCCAAGGAGAAGGCGGCCCTCGAGCGC
GTCCGGCGCGCCCAGTGGGATGCCAAGCACGCCAGCACCCACGCGCGCCA
GCTCGCCGAGGCGGAGAGGAGCAGGCAGAGCACGTACGGCGGCGGCGGTG
CGGTCATGGCCACAGCGGCAGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11249:3234..3657+

>mRNA_H-canaliculatus_F_contig11249.1127.1 ID=mRNA_H-canaliculatus_F_contig11249.1127.1|Name=mRNA_H-canaliculatus_F_contig11249.1127.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=846bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11249:3234..3657+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGACTCGCCCGCGGCGGCGGCGGCAGTCGCGGCCGCCGATACCGCGGC
GTCCCGGGCAGAAAGGGCGGTGCAGTCGCTGCTCAGGGACGTGCGGGCGG
CGGCGGAGCAGTGCCGGCTCAAGAAGAACGCCGTCACGGAAATGAGTAGG
AGGCAGAAGGCGGCGGAGGCCGGCAGGGCGCAGCTCGTGAGGGACACCCA
GATCGCGTCCGAGTCTGCCAGCGCAGCGTCTCAAGCCGCAATGTTCTTCG
AGCAGGCGGCCCGCCTGAAGAGGGCCAAGGAGAAGGCGGCCCTCGAGCGC
GTCCGGCGCGCCCAGTGGGATGCCAAGCACGCCAGCACCCACGCGCGCCA
GCTCGCCGAGGCGGAGAGGAGCAGGCAGAGCACGTACGGCGGCGGCGGTG
CGGTCATGGCCACAGCGGCAGCGGGCGACTCGCCCGCGGCGGCGGCGGCA
GTCGCGGCCGCCGATACCGCGGCGTCCCGGGCAGAAAGGGCGGTGCAGTC
GCTGCTCAGGGACGTGCGGGCGGCGGCGGAGCAGTGCCGGCTCAAGAAGA
ACGCCGTCACGGAAATGAGTAGGAGGCAGAAGGCGGCGGAGGCCGGCAGG
GCGCAGCTCGTGAGGGACACCCAGATCGCGTCCGAGTCTGCCAGCGCAGC
GTCTCAAGCCGCAATGTTCTTCGAGCAGGCGGCCCGCCTGAAGAGGGCCA
AGGAGAAGGCGGCCCTCGAGCGCGTCCGGCGCGCCCAGTGGGATGCCAAG
CACGCCAGCACCCACGCGCGCCAGCTCGCCGAGGCGGAGAGGAGCAGGCA
GAGCACGTACGGCGGCGGCGGTGCGGTCATGGCCACAGCGGCAGCG
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