mRNA_H-canaliculatus_F_contig11249.1126.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11249.1126.1
Unique NamemRNA_H-canaliculatus_F_contig11249.1126.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11249.1126.1 vs. uniprot
Match: A0A6H5JI95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI95_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.420e-21
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 2 
Query:   20 GSARTAAEAAVAAEAFRRKVFSEAKIARDLTEDVLNAKEWSVRNNKAAMWRVEAATRLKDQLITANQLIGRYSDTRKSATEALQKLLAKHTRVQSRLRTAQVKAAFLREAA 352
            G  RTAA+AA  AE FR++  +E + AR LTEDVL+AK +S RNNKAAMWRVE ATRLKD+LI AN LI  Y + R+ A E ++  +A+ TR  +R + AQ +AA L E A
Sbjct: 1673 GGVRTAADAAQMAELFRQRAIAERQAARKLTEDVLDAKAFSERNNKAAMWRVETATRLKDKLIMANDLISGYINMRRGAVEEVKAAMAEETRAVARFKEAQAQAAALLEEA 1783
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11249.1126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI95_9PHAE4.420e-2154.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11249contigH-canaliculatus_F_contig11249:2336..2983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size649
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928805.990803-CDS-H-canaliculatus_F_contig11249:2335..29831622928805.990803-CDS-H-canaliculatus_F_contig11249:2335..2983Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11249 2336..2983 +
1696845571.9117918-CDS-H-canaliculatus_F_contig11249:2335..29831696845571.9117918-CDS-H-canaliculatus_F_contig11249:2335..2983Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11249 2336..2983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11249.1126.1prot_H-canaliculatus_F_contig11249.1126.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11249 2336..2983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11249.1126.1

>prot_H-canaliculatus_F_contig11249.1126.1 ID=prot_H-canaliculatus_F_contig11249.1126.1|Name=mRNA_H-canaliculatus_F_contig11249.1126.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=216bp
EDDGAPRQRPDGRGSGRGGGGVPPQGVFGGEDRARPHRGCSQRQGVVREE
QQGGHVEGGGRDEAQGPAHHRQPAHRPVQRHPEVGDGSPPEAPGEAHEGA
VPAQDRAGEGGLPARSGQRRARVAGGRGWGGRGGGIYRGVEQRQQQHQQH
GQLQQQHRGRENQQQRVDGKRPKRRGAGAAGRVPRVRLDRLSGRDQGLDV
PVLRVVVGPGCGSHSP
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mRNA from alignment at H-canaliculatus_F_contig11249:2336..2983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11249.1126.1 ID=mRNA_H-canaliculatus_F_contig11249.1126.1|Name=mRNA_H-canaliculatus_F_contig11249.1126.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11249:2336..2983+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGACGACGGAGCGCCCCGGCAGCGCCCGGACGGCCGCGGAAGCGGCCG
TGGCGGCGGAGGCGTTCCGCCGCAAGGTGTTTTCGGAGGCGAAGATCGCG
CGAGACCTCACCGAGGATGTTCTCAACGCCAAGGAGTGGTCCGTGAGGAA
CAACAAGGCGGCCATGTGGAGGGTGGAGGCCGCGACGAGGCTCAAGGACC
AGCTCATCACCGCCAACCAGCTCATCGGCCGGTACAGCGACACCCGGAAG
TCGGCGACGGAAGCCCTCCAGAAGCTCCTGGCGAAGCACACGAGGGTGCA
GTCCCGGCTCAGGACCGCGCAGGTGAAGGCGGCCTTCCTGCGCGAAGCGG
CCAACGCCGCGCGCGCGTCGCCGGGGGCAGGGGCTGGGGCGGGCGCGGGG
GCGGGATCTATCGCGGAGTGGAACAACGACAGCAGCAGCACCAGCAGCAC
GGCCAGCTGCAGCAGCAGCATCGCGGGCGGGAGAACCAGCAGCAGCGCGT
CGACGGGAAGCGGCCAAAGCGACGTGGCGCCGGGGCAGCGGGCCGAGTCC
CCCGCGTCCGCCTTGACCGCCTCTCTGGCCGCGACCAGGGGCTCGATGTC
CCCGTCCTTCGGGTCGTTGTCGGCCCAGGATGTGGCTCCCACTCGCCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11249:2336..2983+

>mRNA_H-canaliculatus_F_contig11249.1126.1 ID=mRNA_H-canaliculatus_F_contig11249.1126.1|Name=mRNA_H-canaliculatus_F_contig11249.1126.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1296bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11249:2336..2983+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGACGACGGAGCGCCCCGGCAGCGCCCGGACGGCCGCGGAAGCGGCCG
TGGCGGCGGAGGCGTTCCGCCGCAAGGTGTTTTCGGAGGCGAAGATCGCG
CGAGACCTCACCGAGGATGTTCTCAACGCCAAGGAGTGGTCCGTGAGGAA
CAACAAGGCGGCCATGTGGAGGGTGGAGGCCGCGACGAGGCTCAAGGACC
AGCTCATCACCGCCAACCAGCTCATCGGCCGGTACAGCGACACCCGGAAG
TCGGCGACGGAAGCCCTCCAGAAGCTCCTGGCGAAGCACACGAGGGTGCA
GTCCCGGCTCAGGACCGCGCAGGTGAAGGCGGCCTTCCTGCGCGAAGCGG
CCAACGCCGCGCGCGCGTCGCCGGGGGCAGGGGCTGGGGCGGGCGCGGGG
GCGGGATCTATCGCGGAGTGGAACAACGACAGCAGCAGCACCAGCAGCAC
GGCCAGCTGCAGCAGCAGCATCGCGGGCGGGAGAACCAGCAGCAGCGCGT
CGACGGGAAGCGGCCAAAGCGACGTGGCGCCGGGGCAGCGGGCCGAGTCC
CCCGCGTCCGCCTTGACCGCCTCTCTGGCCGCGACCAGGGGCTCGATGTC
CCCGTCCTTCGGGTCGTTGTCGGCCCAGGATGTGGCTCCCACTCGCCAGA
AGACGACGGAGCGCCCCGGCAGCGCCCGGACGGCCGCGGAAGCGGCCGTG
GCGGCGGAGGCGTTCCGCCGCAAGGTGTTTTCGGAGGCGAAGATCGCGCG
AGACCTCACCGAGGATGTTCTCAACGCCAAGGAGTGGTCCGTGAGGAACA
ACAAGGCGGCCATGTGGAGGGTGGAGGCCGCGACGAGGCTCAAGGACCAG
CTCATCACCGCCAACCAGCTCATCGGCCGGTACAGCGACACCCGGAAGTC
GGCGACGGAAGCCCTCCAGAAGCTCCTGGCGAAGCACACGAGGGTGCAGT
CCCGGCTCAGGACCGCGCAGGTGAAGGCGGCCTTCCTGCGCGAAGCGGCC
AACGCCGCGCGCGCGTCGCCGGGGGCAGGGGCTGGGGCGGGCGCGGGGGC
GGGATCTATCGCGGAGTGGAACAACGACAGCAGCAGCACCAGCAGCACGG
CCAGCTGCAGCAGCAGCATCGCGGGCGGGAGAACCAGCAGCAGCGCGTCG
ACGGGAAGCGGCCAAAGCGACGTGGCGCCGGGGCAGCGGGCCGAGTCCCC
CGCGTCCGCCTTGACCGCCTCTCTGGCCGCGACCAGGGGCTCGATGTCCC
CGTCCTTCGGGTCGTTGTCGGCCCAGGATGTGGCTCCCACTCGCCA
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