mRNA_H-canaliculatus_F_contig11246.1122.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11246.1122.1
Unique NamemRNA_H-canaliculatus_F_contig11246.1122.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11246.1122.1 vs. uniprot
Match: D7G6C9_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6C9_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 4.700e-74
Identity = 116/133 (87.22%), Postives = 125/133 (93.98%), Query Frame = 2 
Query:   14 MADSERRKKGCWLTDHADIAVPPSKEDFVMAGNLQKRRGGFGKMSQQRWKNRCFVLLKTGNLCYFQAGSFESVDFCDPPRGILTLDEDVLISKNTRPDGDFTGALSLVIQGGGQRWKLSSEAPGEINRWAEVL 412
            M+DSERRKKGCWLTDHA I VPP+K+DF++AGNL KRRGGFGKMSQQ+WKNRCFVLLKTGNLCYFQAGSF+SVDFC+PPRGILTLDEDV+ISKNT PDGDFTG  SLVIQGGGQRWKLSSEAPGEINRW E L
Sbjct:    1 MSDSERRKKGCWLTDHAAIPVPPTKQDFILAGNLLKRRGGFGKMSQQKWKNRCFVLLKTGNLCYFQAGSFDSVDFCEPPRGILTLDEDVVISKNTPPDGDFTGTSSLVIQGGGQRWKLSSEAPGEINRWEEAL 133
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BLAST of mRNA_H-canaliculatus_F_contig11246.1122.1 vs. uniprot
Match: A0A6H5JJA0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA0_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 8.870e-74
Identity = 114/133 (85.71%), Postives = 124/133 (93.23%), Query Frame = 2 
Query:   14 MADSERRKKGCWLTDHADIAVPPSKEDFVMAGNLQKRRGGFGKMSQQRWKNRCFVLLKTGNLCYFQAGSFESVDFCDPPRGILTLDEDVLISKNTRPDGDFTGALSLVIQGGGQRWKLSSEAPGEINRWAEVL 412
            M+DSERRKKGCWLTDHA I VPP+K+DF++AGNL KRRGGFGKMSQQ+WKNRCFVLLKTGNLCYFQAGSF+SV+FC+PPRGILTLDEDV+ISKNT PDGD TG  SLVIQGGGQRWKLSSEAPGEINRW E L
Sbjct:    1 MSDSERRKKGCWLTDHAAIPVPPTKQDFILAGNLLKRRGGFGKMSQQKWKNRCFVLLKTGNLCYFQAGSFDSVNFCEPPRGILTLDEDVVISKNTPPDGDVTGTSSLVIQGGGQRWKLSSEAPGEINRWEEAL 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11246.1122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6C9_ECTSI4.700e-7487.22PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JJA0_9PHAE8.870e-7485.71PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11246contigH-canaliculatus_F_contig11246:506..2797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.3
Seed ortholog evalue4.4e-66
Seed eggNOG ortholog2880.D7G6C9
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28II8@1,2QQV7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF1336
Ec32 orthologEc-10_001400.1
Exons3
Model size1905
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11246.1122.1prot_H-canaliculatus_F_contig11246.1122.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11246 1954..2784 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928805.6437328-UTR-H-canaliculatus_F_contig11246:505..19531622928805.6437328-UTR-H-canaliculatus_F_contig11246:505..1953Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11246 506..1953 -
1696845571.8249853-UTR-H-canaliculatus_F_contig11246:505..19531696845571.8249853-UTR-H-canaliculatus_F_contig11246:505..1953Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11246 506..1953 -
1622928805.729791-UTR-H-canaliculatus_F_contig11246:2784..27971622928805.729791-UTR-H-canaliculatus_F_contig11246:2784..2797Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11246 2785..2797 -
1696845571.873855-UTR-H-canaliculatus_F_contig11246:2784..27971696845571.873855-UTR-H-canaliculatus_F_contig11246:2784..2797Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11246 2785..2797 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928805.6778193-CDS-H-canaliculatus_F_contig11246:1953..21991622928805.6778193-CDS-H-canaliculatus_F_contig11246:1953..2199Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11246 1954..2199 -
1696845571.836068-CDS-H-canaliculatus_F_contig11246:1953..21991696845571.836068-CDS-H-canaliculatus_F_contig11246:1953..2199Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11246 1954..2199 -
1622928805.6958222-CDS-H-canaliculatus_F_contig11246:2414..25701622928805.6958222-CDS-H-canaliculatus_F_contig11246:2414..2570Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11246 2415..2570 -
1696845571.849927-CDS-H-canaliculatus_F_contig11246:2414..25701696845571.849927-CDS-H-canaliculatus_F_contig11246:2414..2570Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11246 2415..2570 -
1622928805.7152882-CDS-H-canaliculatus_F_contig11246:2742..27841622928805.7152882-CDS-H-canaliculatus_F_contig11246:2742..2784Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11246 2743..2784 -
1696845571.8608384-CDS-H-canaliculatus_F_contig11246:2742..27841696845571.8608384-CDS-H-canaliculatus_F_contig11246:2742..2784Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11246 2743..2784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11246.1122.1

>prot_H-canaliculatus_F_contig11246.1122.1 ID=prot_H-canaliculatus_F_contig11246.1122.1|Name=mRNA_H-canaliculatus_F_contig11246.1122.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=148bp
MADSERRKKGCWLTDHADIAVPPSKEDFVMAGNLQKRRGGFGKMSQQRWK
NRCFVLLKTGNLCYFQAGSFESVDFCDPPRGILTLDEDVLISKNTRPDGD
FTGALSLVIQGGGQRWKLSSEAPGEINRWAEVLITLSSVILLFYSAS*
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mRNA from alignment at H-canaliculatus_F_contig11246:506..2797-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11246.1122.1 ID=mRNA_H-canaliculatus_F_contig11246.1122.1|Name=mRNA_H-canaliculatus_F_contig11246.1122.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2292bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11246:506..2797- (Hapterophycus canaliculatus Oshoro5f female)
ACCATCATCTACAATGGCCGATTCCGAGAGGAGGAAGAAAGGGTGCTGGT
TGACGGTAAGATACTGCACAACCGGTGGCAGAAGTAAGTCCGACGTTGTG
CAAGTCTGGTGATTCTGGATTGAACGGAAACGCAAAACGTTTCAAGAACA
ACCCCAGGAATGACACCACCTGAAGTTGCGTCTGTTCTATGCCAAAATGT
TCTCCAACGTTGTCTACTTTGATGCAGGACCATGCGGACATTGCCGTTCC
CCCCTCGAAAGAGGACTTCGTTATGGCGGGCAATCTACAAAAGAGACGGG
GAGGGTTCGGGAAAATGTCCCAGCAGAGGTGGAAGAACCGGTGCTTCGTT
CTCTTGAAGACCGGCAACTTGTGCTACTTTCAGGTGCGAGTACGAGAATC
AGCAAGATCTCCGGTGTCTACAACCTGTTTACGCTGTTTTTTGGTGTAGA
CCGCAATACTTGCTACCTAGCCTTGTAAGCTGGTCAAAGGGGAGTCATGC
ATTTTCGCCGTGCAATGTCATGTTTTGAGTGTGAAGTTCAAGTGTACGAT
GTACGTCCCTCCGCCGACTGCTGTCGACAATCCCGATTCGTGTCGCAGGC
GGGTTCGTTCGAGAGCGTCGACTTTTGCGACCCTCCTCGCGGGATCCTCA
CACTCGACGAGGACGTACTTATTTCAAAGAACACGCGGCCAGACGGAGAC
TTCACCGGAGCTTTATCTTTAGTTATTCAAGGAGGAGGACAGAGATGGAA
GCTTAGCTCGGAAGCACCGGGAGAGATCAACCGCTGGGCAGAGGTATTAA
TTACCCTCTCCAGCGTTATTTTGCTATTTTACTCCGCATCCTAACTTTTG
TTCTTGGCGACTTGCCTGTTGGTGGACCTACGTTTGTCCCAACGACTTGG
TTGGCCGTTCAAGTTGATGAGTACGATGCGCGCAGACTGTAGCTGTCAAT
TCTGTAGAGGGGGGTGCCCTCTATAAAAATTGTCGGGGCAAGTGGAAACA
CGTCGAAGATGCTGAACACTTCGGGATTATACAGAGAAGTGTGTATGTGT
GTTTGTGTGTGTGTTTCGTGTGTTTCGTGTATTTAGTTTCGTCTTATTTA
TTTCACGGTACCGCTTGTTGTATAACTACATCAAGCTTGTTGTATAACTA
CATCAAGGGGTTTTTTAACCCCCCGGCGACTTCCTGTTTGGTGATCATGT
CTGGTGACCATTCTTTAAAAACAGAAAGATCGTAGAATACATCCCGAATC
GAAATGCACGGAGTGGTATAACCTCTTCGAAGAGACTAACCCGACTTTTT
ACTTGTACAGCAGTCTCTTGCATATAGAGGCTCTCATACAACCATCGCAG
CACCATTGGTGCTCCTCACTTGGGTGACACACATTTTTTGCCTCACTTCT
GAGCGTACCTAGCTCTGTATGGATCGCTGCAACACATACATACTCAAAGA
GGAACCACAATTGCTGCTGCTGCAGCACTACAAAACCAGCGACACACACT
ACACTACCGTACCTGTAGTACACAGACATAACACGAGCAACAGCAGCACC
CGTCGATCGTGGCTGCTGTAGTTCGACTTACGTACATTACTATGGAGCGC
TAGTGACCCAGAACAGCTTATACTTACGAGGGGAGAAGGGGACGAGAGAA
GTACAGAAGTACCCGTACATATGTCTGAAGAGAATTCACTTATTATTTGC
AATGACCATACGCTGGATTCAGACGACCTGGTTGCAATAATCAGGATTAC
ACTAGAACTAGCCCATAAGGCGATATGGTAGTCACTCGGCAGCCTTTCTA
GGACCCTGATTGACACCCCCGGTCGATCTAGAGCGGTCGTCGTGGCTCTC
AACTCCGGATCATTCGTGCTGCTGAACAGCTGTGCTTCTGTGTTTTCGTG
TTATTCTCGGGGCGCCGCCGACATGAAACTATGTTTGATTGCGCCGCAGG
TGCAGTTGGCGGATCGGGAATCGAAGAATAGCTAGTCCCAGAGTAGTGAA
TAGAAAGTGTTTTGCTTTTTATAGAAGGAGTCAACGATACCAAAGGAAAA
TCCTCCGCTGAGCCAAAATAGTACGGAGTGTAGCGACTCAGGAGGGTTTT
TGTTGAATTCCTTGCAGTGAGGGTTCAGTATAGGTGGGAAAACATTTTAT
GGTGTCAGACGAGACATGCTATGCATATTAGACCGGTTATTATGGTCGCA
AAAAGGAGGGGTAAAAGTTTATCTTGGCCAACATTTGCTCCGAAACATTT
GGACGGGCATGTTATGGGAGCAAATGTTTTGATATATCTGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11246:506..2797-

>mRNA_H-canaliculatus_F_contig11246.1122.1 ID=mRNA_H-canaliculatus_F_contig11246.1122.1|Name=mRNA_H-canaliculatus_F_contig11246.1122.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=888bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11246:506..2797- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCGATTCCGAGAGGAGGAAGAAAGGGTGCTGGTTGACGATGGCCGA
TTCCGAGAGGAGGAAGAAAGGGTGCTGGTTGACGGACCATGCGGACATTG
CCGTTCCCCCCTCGAAAGAGGACTTCGTTATGGCGGGCAATCTACAAAAG
AGACGGGGAGGGTTCGGGAAAATGTCCCAGCAGAGGTGGAAGAACCGGTG
CTTCGTTCTCTTGAAGACCGGCAACTTGTGCTACTTTCAGGACCATGCGG
ACATTGCCGTTCCCCCCTCGAAAGAGGACTTCGTTATGGCGGGCAATCTA
CAAAAGAGACGGGGAGGGTTCGGGAAAATGTCCCAGCAGAGGTGGAAGAA
CCGGTGCTTCGTTCTCTTGAAGACCGGCAACTTGTGCTACTTTCAGGCGG
GTTCGTTCGAGAGCGTCGACTTTTGCGACCCTCCTCGCGGGATCCTCACA
CTCGACGAGGACGTACTTATTTCAAAGAACACGCGGCCAGACGGAGACTT
CACCGGAGCTTTATCTTTAGTTATTCAAGGAGGAGGACAGAGATGGAAGC
TTAGCTCGGAAGCACCGGGAGAGATCAACCGCTGGGCAGAGGTATTAATT
ACCCTCTCCAGCGTTATTTTGCTATTTTACTCCGCATCCTAAGCGGGTTC
GTTCGAGAGCGTCGACTTTTGCGACCCTCCTCGCGGGATCCTCACACTCG
ACGAGGACGTACTTATTTCAAAGAACACGCGGCCAGACGGAGACTTCACC
GGAGCTTTATCTTTAGTTATTCAAGGAGGAGGACAGAGATGGAAGCTTAG
CTCGGAAGCACCGGGAGAGATCAACCGCTGGGCAGAGGTATTAATTACCC
TCTCCAGCGTTATTTTGCTATTTTACTCCGCATCCTAA
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