mRNA_H-canaliculatus_F_contig11245.1121.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11245.1121.1
Unique NamemRNA_H-canaliculatus_F_contig11245.1121.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11245.1121.1 vs. uniprot
Match: H6BXS5_EXODN (WSC domain-containing protein n=1 Tax=Exophiala dermatitidis (strain ATCC 34100 / CBS 525.76 / NIH/UT8656) TaxID=858893 RepID=H6BXS5_EXODN)

HSP 1 Score: 55.5 bits (132), Expect = 5.860e-7
Identity = 31/88 (35.23%), Postives = 40/88 (45.45%), Query Frame = 1 
Query:    1 QCFCSDVGETPSRIGKSTSCNMACVGDNTQTCGGRDAFSAYKFTDVEVP-PPSPTXXXXXXXXXXXXATGDDFSEVGCFADPKGGRIM 261
            QC      +  S +  S+ CNMAC G+N QTCGG  A S Y  T    P  P+P               G  +  VGC+A+P G R +
Sbjct:  677 QCLAGSTLDPRSTVIASSKCNMACAGNNKQTCGGSSAISLYNNTQYVKPYNPNPVSVPNQP--------GSQYGYVGCYAEPAGARAL 756
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BLAST of mRNA_H-canaliculatus_F_contig11245.1121.1 vs. uniprot
Match: A0A194XMX4_9HELO (WSC-domain-containing protein n=1 Tax=Mollisia scopiformis TaxID=149040 RepID=A0A194XMX4_9HELO)

HSP 1 Score: 51.6 bits (122), Expect = 1.310e-5
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    1 QCFCSDV---GETPSRIGKSTSCNMACVGDNTQTCGGRDAFSAYKFTDVE 141
            +C+C  V   G TP     STSCNM C GD+T+TCGG +A + Y  TD+E
Sbjct:  202 ECYCGVVLGNGTTPL---SSTSCNMPCTGDSTETCGGSNALNVYVATDLE 248
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BLAST of mRNA_H-canaliculatus_F_contig11245.1121.1 vs. uniprot
Match: A0A8H7D5A0_9AGAR (Uncharacterized protein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H7D5A0_9AGAR)

HSP 1 Score: 51.2 bits (121), Expect = 1.830e-5
Identity = 33/94 (35.11%), Postives = 46/94 (48.94%), Query Frame = 1 
Query:    1 QCFCSDV---GETPSRIGKSTSCNMACVGDNTQTCGGRDAFSAYKFTDVEVPPPSPTXXXXXXXXXXXXATGDD----FSEVGCFADPKGGRIM 261
            QCFC      G  P  I   + CNMACVG+ ++ CGG +  + Y +T  ++P P P     XX      A   D    ++ VGCF D   GR++
Sbjct:  194 QCFCGPAIVNGGAPEPI---SDCNMACVGNISEFCGGPNRLTVYNYTGTDLPAP-PVGGGGXXATGGATAIATDLPSPWAYVGCFVDGATGRVL 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11245.1121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
H6BXS5_EXODN5.860e-735.23WSC domain-containing protein n=1 Tax=Exophiala de... [more]
A0A194XMX4_9HELO1.310e-550.00WSC-domain-containing protein n=1 Tax=Mollisia sco... [more]
A0A8H7D5A0_9AGAR1.830e-535.11Uncharacterized protein n=1 Tax=Mycena venus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11245contigH-canaliculatus_F_contig11245:128..388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928805.5894666-CDS-H-canaliculatus_F_contig11245:127..3881622928805.5894666-CDS-H-canaliculatus_F_contig11245:127..388Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11245 128..388 +
1696845571.815715-CDS-H-canaliculatus_F_contig11245:127..3881696845571.815715-CDS-H-canaliculatus_F_contig11245:127..388Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11245 128..388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11245.1121.1prot_H-canaliculatus_F_contig11245.1121.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11245 128..388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11245.1121.1

>prot_H-canaliculatus_F_contig11245.1121.1 ID=prot_H-canaliculatus_F_contig11245.1121.1|Name=mRNA_H-canaliculatus_F_contig11245.1121.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=87bp
QCFCSDVGETPSRIGKSTSCNMACVGDNTQTCGGRDAFSAYKFTDVEVPP
PSPTPPAPTPPTPTPPATGDDFSEVGCFADPKGGRIM
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mRNA from alignment at H-canaliculatus_F_contig11245:128..388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11245.1121.1 ID=mRNA_H-canaliculatus_F_contig11245.1121.1|Name=mRNA_H-canaliculatus_F_contig11245.1121.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=261bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11245:128..388+ (Hapterophycus canaliculatus Oshoro5f female)
CAGTGTTTCTGCTCAGACGTCGGAGAAACGCCTTCCAGGATCGGCAAGTC
CACGAGCTGCAACATGGCCTGCGTCGGAGACAACACGCAGACTTGCGGCG
GCAGGGATGCCTTTTCCGCTTACAAGTTTACGGACGTGGAGGTCCCCCCA
CCTTCCCCGACCCCCCCTGCTCCGACGCCCCCTACTCCGACGCCTCCCGC
TACCGGCGATGACTTCTCGGAGGTCGGTTGTTTCGCCGATCCCAAGGGCG
GACGCATCATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11245:128..388+

>mRNA_H-canaliculatus_F_contig11245.1121.1 ID=mRNA_H-canaliculatus_F_contig11245.1121.1|Name=mRNA_H-canaliculatus_F_contig11245.1121.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=522bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11245:128..388+ (Hapterophycus canaliculatus Oshoro5f female)
CAGTGTTTCTGCTCAGACGTCGGAGAAACGCCTTCCAGGATCGGCAAGTC
CACGAGCTGCAACATGGCCTGCGTCGGAGACAACACGCAGACTTGCGGCG
GCAGGGATGCCTTTTCCGCTTACAAGTTTACGGACGTGGAGGTCCCCCCA
CCTTCCCCGACCCCCCCTGCTCCGACGCCCCCTACTCCGACGCCTCCCGC
TACCGGCGATGACTTCTCGGAGGTCGGTTGTTTCGCCGATCCCAAGGGCG
GACGCATCATGCAGTGTTTCTGCTCAGACGTCGGAGAAACGCCTTCCAGG
ATCGGCAAGTCCACGAGCTGCAACATGGCCTGCGTCGGAGACAACACGCA
GACTTGCGGCGGCAGGGATGCCTTTTCCGCTTACAAGTTTACGGACGTGG
AGGTCCCCCCACCTTCCCCGACCCCCCCTGCTCCGACGCCCCCTACTCCG
ACGCCTCCCGCTACCGGCGATGACTTCTCGGAGGTCGGTTGTTTCGCCGA
TCCCAAGGGCGGACGCATCATG
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