mRNA_H-canaliculatus_F_contig1124.1119.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1124.1119.1 vs. uniprot
Match: D8LQQ9_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ9_ECTSI) HSP 1 Score: 892 bits (2305), Expect = 1.420e-294 Identity = 632/1181 (53.51%), Postives = 728/1181 (61.64%), Query Frame = 1
Query: 148 EVQLDGVKSGVYTLAQGLCSNHGLTSLDLAANELDEYAGQELXXXXXXXXXXXXXXXTGNSRIPDEWLREHHKICSEVYGILPSLSESLRLNRVRRNANGAGAQGSGLGVRASPRTAHLEKTRAREARAXXXXXXXXXXXXXXXXXXXXXXXXXXT---------------------------------------------------RSKESGGEEAKGE---------RSELSREEDGEDGRGGTVLRDVGGGRGEDAGLLGVEGSKSASVVPDEQQLSRGKRRRHHSRSSTRLKLPTAVEVAAAESDAASKDKVGAGSHTGRTRRGRKHHALPPLPQSPVPSTFPLERIEGGVGQEARAGGDEAGEXXXXXXXXXXXXXXXXXXXXXXXXDACAPKNRFDESSSQLSRTLVDAAAAAAXXXXXSVLGASDVRKHGGVDVFGAGDGIRRAPGVWTRRGVWAPANELAEDRTRVEEQRTGDRQRQIREDEAMREAGEAKREELLEYLSTSDGEVLVARVAKLLVHAQREEARVSERTRAAELRALKLRRKQALKMSAGQRLGYSGTGGTDGGISILTRTRPLWLTAPWARNANSQNL-GEAGA--------TVAAAGIDSFRGTALAGG-YGNRPTVKVDW-ELPLSEGGRSHATLGGLDSLASSGTAASSLPSATAAAAMEEEDEVEIQRALGELREDKRAWDLKHRPPFLRTFGRFDPEGRGEILASDIGDLMAQLLLPEAVRPEEVKKITAELTKISDQERKAEKAALERAARRSGLHHAPPSPRPFTLGSGGRTVRMALVWRWHRREHMQWEPSFTAPSRKELRRLASQQRRRERTGEVARDWARRVILAVGEREARLETVERFRGITPPRFVCPVCHEFGCSTADGLNEHLRDASWHDVNAALQERFEENADMVAVARRAGGAGSYPEYFHIARDMPEETELQVHEEPSEISRPLGTITFEMLVLALGEEGDWLKINFESHEGVYVKHTTTTDPKRGRPQRHRTVVTRMTLPAARAASKVAASTAHLSATT-------TGALASTLARPITFAASGLSTLGRATLSTLSSFSYSLHHAGASRPAREPEALAPGTAVFKPRVVRFVLPRVYCQARGLPDGVMLKVRTEPGGAEGYRPGFGGDREGE----GGHVLGRIGADQCVIGLATSGDWLQAR 3444
EV+ GVKSG+YTLAQGLC+N LTSLDLAANELDEYAGQEL XXXXXXXXXXXXX + +PDEWLREHHKICSEVY ILPSL+ESLRLNR RR + +G RASPRT HLE+TRA+EARA XXXXXXXXXXXXXXXXXXXXXXX R K SGG +GE R + S + T R G G D+ ++ S DE RGKRRR + + TAV + S + K S RR R+ P P SP + G G + ++GG A E ++ GA+ DGIRR PGVWTRRGVWAPAN+LAEDR RVE +R GDRQRQ+REDEA+ EAG AKREE+LEYLST+DGE LVARVA +LVHAQREE R ++R R EL+AL L RK+ M+ +R G GG TRT P WL A W NA S GE+ A T A AG TA A G P K W E +SE + +LGGL SL S+ +SSLPS AA+ MEEEDE EI+R+L E+++ K+AWD+KHRPPFL+ FGRFDPEGRGE+LASDIGDLMAQL LPEAVRPEEVKK+ A+LTKI+D+ERKA +AA ERA RRSGL +PRPFT GSG +TV M +WRWHRREH+QW PSFTAPSRKELR+L ++QR+RER GEV+RDWARRVIL VGEREARL+ ERFRG+ PPRFVCP CHEFGCST D L+EHL D WH VNAALQERFEENAD+VAVARRAGG+ S+PEYFH+AR+MPEETELQVHE+ INF+SH GVYVKHT D K+G +R R V+TRMTLP AR+A+K+AASTAHLSAT G LASTLARP+T A+SGLSTLG A + L + +Y+LHH GA P REPEALAPGTAVFKPRVVRF+LPRVYC A GLP G MLKVRTEPGGAEG R G+GG E GGHVLGRIGADQCVI ATSGDWLQ +
Sbjct: 857 EVEPTGVKSGIYTLAQGLCTNRALTSLDLAANELDEYAGQELAHXXXXXXXXXXXXXXXXN-VPDEWLREHHKICSEVYDILPSLAESLRLNRARRTD-----LITTIGRRASPRTIHLERTRAKEARASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGGTDKEARRVHEEKAGGSDEWREKPSGGLSGEGEGLVSGRKNRREKESNACEAPPISANTAGRVPGAGTEGDSVEEAMKTKPSVPTTADEPTPVRGKRRRRDQGTGVHAEQSTAVATSGVSSPVSGGGKARVDSSP--PRRLRRQRERPTRPASPSALSTRGRGAGEGRGHDRKSGGATAEEE--------------------------------------------------------AMEGAA------------GSDGIRRVPGVWTRRGVWAPANKLAEDRARVEGRRIGDRQRQLREDEAVHEAGAAKREEVLEYLSTTDGEALVARVAAVLVHAQREEDRATKRERKEELQALTLHRKRKALMT--KRRHSDGPGGLL--TLTATRTLPSWL-AGWTGNAKSLRYSGESPAGPVPKMTATEATAGNAMPALTAAATGPKAAGPAKKAGWGETAVSE---AEESLGGLVSLVST---SSSLPSFAAASQMEEEDEEEIKRSLREMQDGKKAWDVKHRPPFLKVFGRFDPEGRGEMLASDIGDLMAQLRLPEAVRPEEVKKVAAQLTKIADEERKAVQAARERAIRRSGLDQGTSAPRPFTTGSGEKTVCMTHLWRWHRREHLQWRPSFTAPSRKELRQLNNRQRKRERWGEVSRDWARRVILVVGEREARLQAAERFRGLDPPRFVCPECHEFGCSTPDALDEHLGDEPWHAVNAALQERFEENADIVAVARRAGGSHSFPEYFHVAREMPEETELQVHEDA---------------------------INFKSHRGVYVKHTMA-DTKKGS-RRRRVVMTRMTLPPARSAAKIAASTAHLSATAGGGGVGGVGTLASTLARPVTLASSGLSTLGHAAATGLQALAYTLHHGGARPPPREPEALAPGTAVFKPRVVRFLLPRVYCHAAGLPAGTMLKVRTEPGGAEGERGGWGGHGGEEAVEGGGHVLGRIGADQCVIAHATSGDWLQVQ 1921
BLAST of mRNA_H-canaliculatus_F_contig1124.1119.1 vs. uniprot
Match: A0A6H5KGV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV7_9PHAE) HSP 1 Score: 303 bits (775), Expect = 2.740e-89 Identity = 191/380 (50.26%), Postives = 231/380 (60.79%), Query Frame = 1
Query: 1549 REEARVSERTRAAELRALKLRRKQ-ALKMSAGQRLGYSGTGGTDGGISILTRTR--PLWLTAPWARNANS-QNLGE--AGATVAAAGIDSFRGTALAG--GYGNRPTVKVDW-ELPLSEGGRSHATLGGLDSLASSGTAASSLPSATAAAAMEEEDEVEIQRALGELREDKRAWDLKHRPPFLRTFGRFDPEGRGEILASDIGDLMAQLLLPEAVRPEEVKKITAELTKISDQERKAEKAALERAARRSGLHHAPPSPRPFTLGSGGRTVRMALVWRWHRREHMQWEPSFTAPSRKELRRLASQQRRRERTGEVARDWARRVILAVGEREARLETVERFRGITPPRFVCPVCHEFGCSTADGLNEHLRDASWHDVNAALQ 2661
++E R ++R R EL+AL LRRK+ AL M G GG+ LT TR PLWLT W NA ++ GE AG ++ G A+ P K W E + E + +LGGL SL S+ SSLPS AA+ M EI+R+L E++++K+AWD KHRPPFL+ FGRFDPEG GE+LASDIGDLMAQL LPEAVRPEEVK + A+LTK+ M +W+WHRREH+QW PSFTAPS KELR+L ++QR+RER+GEV+RDWARRVIL VGEREARL+ ERFRG PPRFVCP CHEFGCSTAD L+EHL D WH VNAALQ
Sbjct: 4 KDEDRATKRKRKEELQALTLRRKRTALTMKRRHNDG-------PGGLMALTATRKLPLWLT-DWTGNAKPPRHSGESTAGPVAKMTATEATAGNAMPALTVAATGPPKKAGWGETAVPE---AEESLGGLASLVST---TSSLPSFAAASQMXXXXXXEIKRSLREMQDEKKAWDAKHRPPFLKVFGRFDPEGLGEMLASDIGDLMAQLRLPEAVRPEEVKNVAAQLTKVC----------------------------------------MTHLWKWHRREHLQWRPSFTAPSHKELRQLNNRQRKRERSGEVSRDWARRVILVVGEREARLQAAERFRGFHPPRFVCPECHEFGCSTADALDEHLGDEPWHAVNAALQ 329
BLAST of mRNA_H-canaliculatus_F_contig1124.1119.1 vs. uniprot
Match: A0A6H5KN13_9PHAE (AMPK1_CBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN13_9PHAE) HSP 1 Score: 144 bits (362), Expect = 3.800e-31 Identity = 198/521 (38.00%), Postives = 232/521 (44.53%), Query Frame = 1
Query: 10 AGLLSRNGSIECLDLAFNQVGPEGLRRLSGFLFQNARLEILGLRGCEVQLDGVKSGVYTLAQGLCSNHGLTSLDLAANELDEYAGQELXXXXXXXXXXXXXXXTGNSRIPDEWLREHHKICSEVYGILPSLSESLRLNRVRRNANGAGAQGSGLGVRASPRTAHLEKTRAREARAXXXXXXXXXXXXXXXXXXXXXXXXXXTRSKE-------------------SGG--------EEAKGERSELSREE--DGEDGRGG---------------TVLRDVGGGRGEDAGLLGVEGSKSASVVPDEQQLSRGKRRRHHSRSSTRLKLPTAVEVAAAESDAASKDKVGA-GSHTGRTRRGRKHHALPPLPQSPVPSTFPLERIEGGVGQEARAGGDEAGEXXXXXXXXXXXXXXXXXXXXXXXXDACAPKNRFDESSSQLSRTLVDAAAAAAXXXXXSVLGASDVRKHGGVDVFGAGDGIRRAPGVWTRRGVWAPANELAEDRTRVEEQRTGDRQRQIREDE 1437
A LL RNG+IE LDLA+N +GPEGLRRLSGFL++N LE LGLRGCEV+ GVKSG+YTLA EVY ILPSL+ESLRLNR RR + +G RASPRT HLE+TRA+EA A XXXXXXXXXXXXXXXXXXXXXXX SGG E K RS+ RE+ G G G T R G G D+ ++ S DE RGK +R +S + PTAV + S + K G S R RR R+ P LP + R G+ XXXXXXXXXXXX S + T V+ AA D + ++ DG+RR PGVWTRRGVWAPAN+LAEDR RVEE+R GD QRQ+REDE
Sbjct: 527 AELLLRNGAIETLDLAYNPIGPEGLRRLSGFLWKNTSLETLGLRGCEVEPAGVKSGIYTLAH------------------------------------------------------------EVYDILPSLAESLRLNRTRRTD-----LITTIGRRASPRTIHLERTRAKEACASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGGTDKEARRVHEEKAGRSDEWREKASSGLSGEGKEKESNVCEAPPISNITARRVPGAGIKGDSAQGAMKTKPSVPTTADEPSPVRGKHQRRDLGTSVHAEQPTAVATSGVRSPVSGGGKAGVDNSPPRRLRRQRERPTQPALPSA----------------LWTRGKGEXX--------------XXXXXXXXXXXXXXXXXXXXXXXXXSTTAATAVNTGAATV-----------DAAEEEAMEGATGSDGVRRVPGVWTRRGVWAPANKLAEDRARVEERRVGDWQRQLREDE 941
BLAST of mRNA_H-canaliculatus_F_contig1124.1119.1 vs. uniprot
Match: A0A836CJN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN6_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.010e-20 Identity = 83/288 (28.82%), Postives = 129/288 (44.79%), Query Frame = 1
Query: 2581 EFGCSTADGLNEHLRDASWHDVNAALQERFEENADMVAVARRAGGAGSYPEYFHIARDMPEETELQVHEEPSEISRPLGTITFEMLVLALGEEGDWLKINFESHEGVYVKHTTTTDPKRGRPQRHRTVVTRMTLPAARAASKVAASTAHLSATTTGALASTLARPITFAASGLSTLGRATLSTLSSFSYSLHHAGASRPAREPEALAPGTAVFKPRVVRFVLPRVYCQARGLPDGVMLKVRTEPGGAEGYRPGFGGDREGEGGHVLGRIGADQCVIGLATSGDWLQAR 3444
E G S+ L+EH +D +H+ AL R + AD++ R +YP+Y+ +AR +P ETEL V++ +SRPLG +T +M + AL +G W++INF+ H+GV+V++ G ++TRM LP + A AA+ L A G L EP +L A + P V+R+ P + + G P+GV LK+R+ P G VLG + ++ V+ A +GDWLQ +
Sbjct: 1497 EVGISSRRRLDEHQKDMVFHNAYRALAARMDYLADVIETCTRDVVPMTYPDYYQVARSLPGETELPVYQAADTLSRPLGNVTCDMTIEALAHDGQWMQINFKGHKGVWVRYKGEAGVLTGGGG---ILLTRMPLPPRKPA---AAAKIQLQALRMG----------------------------------LRRLKPGLEPPEPPSLDVRAAGYSPHVIRYPGPVPFRCSAGAPEGVRLKIRSNPSGDA---------------QVLGFLSHEEGVMASAEAGDWLQVQ 1729 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1124.1119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1124.1119.1 >prot_H-canaliculatus_F_contig1124.1119.1 ID=prot_H-canaliculatus_F_contig1124.1119.1|Name=mRNA_H-canaliculatus_F_contig1124.1119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1158bp QRLAGLLSRNGSIECLDLAFNQVGPEGLRRLSGFLFQNARLEILGLRGCEback to top mRNA from alignment at H-canaliculatus_F_contig1124:18866..30109- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1124.1119.1 ID=mRNA_H-canaliculatus_F_contig1124.1119.1|Name=mRNA_H-canaliculatus_F_contig1124.1119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=11244bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1124:18866..30109- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1124:18866..30109- >mRNA_H-canaliculatus_F_contig1124.1119.1 ID=mRNA_H-canaliculatus_F_contig1124.1119.1|Name=mRNA_H-canaliculatus_F_contig1124.1119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6948bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1124:18866..30109- (Hapterophycus canaliculatus Oshoro5f female)back to top |