mRNA_H-canaliculatus_F_contig11236.1116.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig11236.1116.1 vs. uniprot
Match: D8LN98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN98_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.540e-21 Identity = 53/114 (46.49%), Postives = 80/114 (70.18%), Query Frame = 1
Query: 373 PSRTIWSCDDLDVGRTSVEGMVIFAGDVVCEQERIVEVRNGAEATLLSNEHVLRVEGVRFFVGKASTMHFGVNTMVVEAVKGDSGSGELFTVHSGGHLTFHAEKQGPLPEDGNE 714
PS+ I SCD+L T +EG+++ GDVVC++ER++E+ + E +LS + VL +EGVRF V + +T+ FGV+ M VE ++G GSG +FTV G++ HA QGP+P+DG+E
Sbjct: 246 PSQKIHSCDELRSNGTRLEGVLLITGDVVCQEERLLEITD--ELIILSEKPVLYLEGVRFHVKQNATLRFGVSAMHVEQLEG--GSGAIFTVEPQGYVGLHANGQGPVPQDGSE 355
BLAST of mRNA_H-canaliculatus_F_contig11236.1116.1 vs. uniprot
Match: A0A6H5JJM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM2_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.260e-18 Identity = 50/115 (43.48%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 370 LPSRTIWSCDDLDVGRTSVEGMVIFAGDVVCEQERIVEVRNGAEATLLSNEHVLRVEGVRFFVGKASTMHFGVNTMVVEAVKGDSGSGELFTVHSGGHLTFHAEKQGPLPEDGNE 714
LP + I SCD L GRT +EG+++ GD+VC +ER++E+ E +LS VL +EGVR + + + FGV+TM VE ++G SG+ +FTV G++ +A QGP+P DG+E
Sbjct: 120 LPGQAINSCDKLRSGRTRMEGVLLITGDIVCREERLLEITE--ELIILSQTPVLYLEGVRIHFKENAKLRFGVSTMRVEKLEGISGA--IFTVEPQGYVGLYAHGQGPVPHDGSE 230
BLAST of mRNA_H-canaliculatus_F_contig11236.1116.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 1.510e-18 Identity = 53/125 (42.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 370 LPSRTIWSCDDLDVGRTSVEGMVIFAGDVVCEQERIVEVRNGAEATLLSNEHVLRVEGVRFFVGKASTMHFGVNTMVVEAVK-GDSG---------SGELFTVHSGGHLTFHAEKQGPLPEDGNE 714
LP + I SCD L GRT +EG+++ GD+VC +ER++E+ E +LS VL +EGVRF V + + + F V+TM VE ++ GD+ SG +FTV G++ HA QGP+P+DG+E
Sbjct: 1117 LPGQAIDSCDKLRSGRTRMEGVLLITGDIVCREERLLEITE--ELIILSQTPVLHLEGVRFHVKENAKLRFVVSTMRVEKLEQGDAAAGVPALQGVSGAIFTVEPQGYVGLHAHGQGPVPQDGSE 1239
BLAST of mRNA_H-canaliculatus_F_contig11236.1116.1 vs. uniprot
Match: D8LLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 1.560e-13 Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 364 GDLPSRTIWSCDDLDVGRTSVEGMVIFAGDVVCEQERIVEVRNGAEATLLSNEHVLRVEGVRFFVGKASTMHFGVNTMVVEAVKGDSGSGELFTVHSGGHLTFHAEKQGPLPEDG 708
G LP I SC+ L RT+V G++ GD++CE +R +EV + +A ++SN + L +GV F V + +T+ F +TM+ E ++GDS E+FT+ G++ H PL E+G
Sbjct: 1216 GHLPLTAIESCERLRFDRTTVLGILTIEGDILCEDQRTIEVTD--KAVIVSNRNPLHFKGVHFHVHEKATLRFAFSTMLAENLEGDSS--EIFTIEPEGYVGLHPTAWVPLSENG 1326
BLAST of mRNA_H-canaliculatus_F_contig11236.1116.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 2.180e-10 Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1
Query: 370 LPSRTIWSCDDLDVGRTSVEGMVIFAGDVVCEQERIVEVRNGAEATLLSNEHVLRVEGVRFFVGKASTMHFGVNTMVVEAVKGDSGSGELFTVHSGGHLTFHAEKQGPLPED 705
+ + T+ SCDDL G T V G+V+ V+C++ R +EV +A +S L +GV F+V + ++ FG+ TM +E ++G SG +F V G L +A++ P PED
Sbjct: 781 IVASTLNSCDDLTAGWTPVYGIVVVTDHVICQEARTIEVSK--KAYFISKIPTLWFKGVTFYVRETGSLTFGIPTMHLETLEGQSGG--IFAVEPQGALGLYADECIPFPED 888
BLAST of mRNA_H-canaliculatus_F_contig11236.1116.1 vs. uniprot
Match: D7G0Y7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y7_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 3.020e-8 Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 1
Query: 370 LPSRTIWSCDDLDVGRTSVEGMVIFAGDVVCEQERIVEVRNGAEATLLSNEHVLRVEGVRFFVGKASTMHFGVNTMVVEAVKGDSGSGELFTVHSGGHLTFHAEKQGPLPEDG 708
LP + SCD L + G+V GD++CE++R+++V+ EA L++ + L +GV F V K + + V M +E +KGD+ L V GG L G PE G
Sbjct: 91 LPEAVVSSCDQLHSPLMAAYGVVRVTGDIICEEKRVIQVKE--EAILITEKPNLVTKGVHFRVRKDAALRISVRQMSIENIKGDTSP--LLRVDPGGLLRLEIHDFGTPPEGG 199
BLAST of mRNA_H-canaliculatus_F_contig11236.1116.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI) HSP 1 Score: 55.5 bits (132), Expect = 3.280e-5 Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1
Query: 73 EGDSSSRELFTVESDGYLHVHAEQEGPLLKDGTEEDYHSVVRVEKGGEIEFKGDAQYTASSVAV 264
EG+S ELFTVE G L + A++ P +GTEED HS+V +EKGG E G A +TAS++ +
Sbjct: 746 EGESG--ELFTVEPQGVLAMSADKWSPSPDNGTEEDVHSLVALEKGGRFELDGKASFTASTMTI 807 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11236.1116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11236.1116.1 >prot_H-canaliculatus_F_contig11236.1116.1 ID=prot_H-canaliculatus_F_contig11236.1116.1|Name=mRNA_H-canaliculatus_F_contig11236.1116.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=238bp GVRFVVAKNATMHINVDSMVVEAIEGDSSSRELFTVESDGYLHVHAEQEGback to top mRNA from alignment at H-canaliculatus_F_contig11236:13..4310+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig11236.1116.1 ID=mRNA_H-canaliculatus_F_contig11236.1116.1|Name=mRNA_H-canaliculatus_F_contig11236.1116.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4298bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11236:13..4310+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11236:13..4310+ >mRNA_H-canaliculatus_F_contig11236.1116.1 ID=mRNA_H-canaliculatus_F_contig11236.1116.1|Name=mRNA_H-canaliculatus_F_contig11236.1116.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1428bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11236:13..4310+ (Hapterophycus canaliculatus Oshoro5f female)back to top |