mRNA_H-canaliculatus_F_contig11233.1114.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11233.1114.1
Unique NamemRNA_H-canaliculatus_F_contig11233.1114.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11233.1114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11233contigH-canaliculatus_F_contig11233:3636..3800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size162
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.1010127-UTR-H-canaliculatus_F_contig11233:3635..36381622928804.1010127-UTR-H-canaliculatus_F_contig11233:3635..3638Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11233 3636..3638 +
1696845571.3658593-UTR-H-canaliculatus_F_contig11233:3635..36381696845571.3658593-UTR-H-canaliculatus_F_contig11233:3635..3638Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11233 3636..3638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.111061-CDS-H-canaliculatus_F_contig11233:3638..38001622928804.111061-CDS-H-canaliculatus_F_contig11233:3638..3800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11233 3639..3800 +
1696845571.3744516-CDS-H-canaliculatus_F_contig11233:3638..38001696845571.3744516-CDS-H-canaliculatus_F_contig11233:3638..3800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11233 3639..3800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11233.1114.1prot_H-canaliculatus_F_contig11233.1114.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11233 3639..3800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11233.1114.1

>prot_H-canaliculatus_F_contig11233.1114.1 ID=prot_H-canaliculatus_F_contig11233.1114.1|Name=mRNA_H-canaliculatus_F_contig11233.1114.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=54bp
MEPPRRPGGDQDNPRSHWVDPGYSKYSPGTAPAPEPSEITRTYPAPPLLS
ERQR
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mRNA from alignment at H-canaliculatus_F_contig11233:3636..3800+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11233.1114.1 ID=mRNA_H-canaliculatus_F_contig11233.1114.1|Name=mRNA_H-canaliculatus_F_contig11233.1114.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11233:3636..3800+ (Hapterophycus canaliculatus Oshoro5f female)
CACATGGAACCCCCCCGGAGACCAGGGGGTGACCAAGACAATCCTAGGTC
ACACTGGGTGGACCCCGGCTACTCCAAGTACTCTCCTGGAACGGCGCCCG
CGCCAGAGCCGTCGGAAATTACAAGGACCTACCCGGCGCCGCCGTTACTG
TCCGAGCGACAGCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11233:3636..3800+

>mRNA_H-canaliculatus_F_contig11233.1114.1 ID=mRNA_H-canaliculatus_F_contig11233.1114.1|Name=mRNA_H-canaliculatus_F_contig11233.1114.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=324bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11233:3636..3800+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAACCCCCCCGGAGACCAGGGGGTGACCAAGACAATCCTAGGTCACA
CTGGGTGGACCCCGGCTACTCCAAGTACTCTCCTGGAACGGCGCCCGCGC
CAGAGCCGTCGGAAATTACAAGGACCTACCCGGCGCCGCCGTTACTGTCC
GAGCGACAGCGCATGGAACCCCCCCGGAGACCAGGGGGTGACCAAGACAA
TCCTAGGTCACACTGGGTGGACCCCGGCTACTCCAAGTACTCTCCTGGAA
CGGCGCCCGCGCCAGAGCCGTCGGAAATTACAAGGACCTACCCGGCGCCG
CCGTTACTGTCCGAGCGACAGCGC
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