mRNA_H-canaliculatus_F_contig11231.1111.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11231.1111.1
Unique NamemRNA_H-canaliculatus_F_contig11231.1111.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11231.1111.1 vs. uniprot
Match: A0A6H5L453_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.210e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    4 GGALGRRKAWAARRRVPVPAHRRRRCLGAAVEYAVRL 114
            GGALGRRKAW ARRRVPVP HRRRRCLGAAVEYA+RL
Sbjct:  282 GGALGRRKAWGARRRVPVPTHRRRRCLGAAVEYALRL 318
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BLAST of mRNA_H-canaliculatus_F_contig11231.1111.1 vs. uniprot
Match: D8LGM0_ECTSI (Protein transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.460e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    4 GGALGRRKAWAARRRVPVPAHRRRRCLGAAVEYAVRLARTAD 129
            GGALGRRKAWAARRRVPVPAHRRRRCLGAAVEYA+ +    +
Sbjct:  266 GGALGRRKAWAARRRVPVPAHRRRRCLGAAVEYALSMGNPTN 307
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BLAST of mRNA_H-canaliculatus_F_contig11231.1111.1 vs. uniprot
Match: D7U2U3_VITVI (Protein transport protein SEC23 n=4 Tax=Vitis TaxID=3603 RepID=D7U2U3_VITVI)

HSP 1 Score: 58.2 bits (139), Expect = 1.060e-6
Identity = 50/172 (29.07%), Postives = 80/172 (46.51%), Query Frame = 1 
Query:   46 RVPVPAHRRRRCLGAAVEYAVRLARTADRP-----------TSRLLVCLGGCPNFGPGAVAPCVPGAAAAEVDPEALAAATDYFEDLGEKALLQGAGVDVFCASSEGLGAAALQGLVAPTSGYVVIQPSFGEEFAGNLAKSVAEQTMSDGDGLHGCVIDVRASAGVELLHVI 528
            ++ +P   R RCLG AVE A+R+ +                 SR++VC GG   +GPG+V    P + +    P    +A  + E LG++A  Q   VD+ CA +  +    LQ L   + G +V+   FGE F  NL ++          G HG + ++R S  + +  V+
Sbjct:  377 KLNLPEASRDRCLGTAVEVALRIIQGPSAEISRGIVKRSGGNSRIIVCAGGPNTYGPGSV----PHSLSHPNYPHMEKSALKWMEHLGQEAHRQNTVVDILCAGTCPVRVPILQPLAKASGGALVLHDDFGEAFGVNLQRASTRAA-----GSHG-LFEIRCSDDILITQVV 538
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11231.1111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L453_9PHAE1.210e-1091.89Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
D8LGM0_ECTSI1.460e-1080.95Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
D7U2U3_VITVI1.060e-629.07Protein transport protein SEC23 n=4 Tax=Vitis TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11231contigH-canaliculatus_F_contig11231:216..3252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue6.5e-08
Seed eggNOG ortholog3641.EOX95450
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
EggNOG free text desc.transport) protein
EggNOG OGs37NTS@33090,3GEAK@35493,COG5047@1,KOG1986@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categorymitochondrion
Exons4
Model size530
Cds size528
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11231.1111.1prot_H-canaliculatus_F_contig11231.1111.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11231 216..3251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928803.866056-CDS-H-canaliculatus_F_contig11231:215..3251622928803.866056-CDS-H-canaliculatus_F_contig11231:215..325Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11231 216..325 +
1696845571.2468913-CDS-H-canaliculatus_F_contig11231:215..3251696845571.2468913-CDS-H-canaliculatus_F_contig11231:215..325Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11231 216..325 +
1622928803.8801706-CDS-H-canaliculatus_F_contig11231:925..11091622928803.8801706-CDS-H-canaliculatus_F_contig11231:925..1109Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11231 926..1109 +
1696845571.2572734-CDS-H-canaliculatus_F_contig11231:925..11091696845571.2572734-CDS-H-canaliculatus_F_contig11231:925..1109Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11231 926..1109 +
1622928803.890449-CDS-H-canaliculatus_F_contig11231:1943..21241622928803.890449-CDS-H-canaliculatus_F_contig11231:1943..2124Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11231 1944..2124 +
1696845571.2685716-CDS-H-canaliculatus_F_contig11231:1943..21241696845571.2685716-CDS-H-canaliculatus_F_contig11231:1943..2124Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11231 1944..2124 +
1622928803.905756-CDS-H-canaliculatus_F_contig11231:3198..32511622928803.905756-CDS-H-canaliculatus_F_contig11231:3198..3251Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11231 3199..3251 +
1696845571.2809377-CDS-H-canaliculatus_F_contig11231:3198..32511696845571.2809377-CDS-H-canaliculatus_F_contig11231:3198..3251Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11231 3199..3251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11231.1111.1

>prot_H-canaliculatus_F_contig11231.1111.1 ID=prot_H-canaliculatus_F_contig11231.1111.1|Name=mRNA_H-canaliculatus_F_contig11231.1111.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=176bp
SGGALGRRKAWAARRRVPVPAHRRRRCLGAAVEYAVRLARTADRPTSRLL
VCLGGCPNFGPGAVAPCVPGAAAAEVDPEALAAATDYFEDLGEKALLQGA
GVDVFCASSEGLGAAALQGLVAPTSGYVVIQPSFGEEFAGNLAKSVAEQT
MSDGDGLHGCVIDVRASAGVELLHVI
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mRNA from alignment at H-canaliculatus_F_contig11231:216..3252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11231.1111.1 ID=mRNA_H-canaliculatus_F_contig11231.1111.1|Name=mRNA_H-canaliculatus_F_contig11231.1111.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3037bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11231:216..3252+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGGCGGGGCGTTGGGGCGGCGAAAGGCTTGGGCGGCCCGGCGGAGGGT
GCCGGTGCCCGCGCACCGTCGACGGCGCTGCCTGGGAGCGGCGGTGGAGT
ACGCCGTCAGGTGCGTGCGTGCGTGTCGTCGTGTTGCAGGGTTTGCACGA
ATTCGCGTCGGCGTTTTTCTTTCACTGGGAGAAAGTAAGAACATCTGTTG
CGCAGAGGTGGCGGGCACAATTGGATTCCTATCGCATGTGGCGTGTGTCC
GGACGGCATGCGGTGAAAAATGATACGACCGAGACTAATGAAACGAGTCG
GGTGATGGGATTGGGCGAAGGGTCCCCGGTACCCTGCGCCGAAGACCATT
GGTTTTTTAGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGTTCGCTTCTCCTATTTGCCCCTCTGAACGCACAAAACCTCCA
TAAATCCGCCATTCTTCCATCGACCGGAGGATGGATCGGTCGATCGCCCG
CTGCCCCGTGACGAAATAGACGGTGCACTGAACTGTACCGTACTTTACAT
AGTCCTGACACCCTTTTTTTCACGGTGGCTGCTTTCCCCCAGAACAAGAT
CAACGTCAAAACAAGGATCCCGCCCTCTCTACACTACGGTCTGTCTCACG
GCCTCGCATAGATATACAGACCCCCCCTTCCCTCCTTTCCGGCTCGTCTT
CTCCTTCCAGGCTAGCTCGCACGGCGGACCGCCCAACATCGCGTCTCCTC
GTGTGCCTGGGGGGCTGCCCGAACTTCGGGCCAGGCGCCGTGGCCCCCTG
CGTCCCTGGAGCGGCGGCGGCGGAAGTGGATCCCGAGGCGCTGGCCGCGG
CCACGGACTACTTCGAAGACCTCGGGGAGAAGGCGCTGTTGCAGGTACAG
GGACTGCGCGCGCGCGCGCGAGTCTGTCGGTCGCTCTGTCTGTCCGTCCG
TCCGTCCGTCCGCCCGTCGGTCCGTGCGTTGCTTCTTTTCCCCCCATTCT
TGTCCTTGTGTACTATACTCCCTATGTATTACTCCGTATATGAAGTATAT
GTGTTCAGGTGCCATATTTTTTATCGTTGTTTTCGCGCTTGTTGCGGTCG
GCTCGTGTTCGTGTGTAGTTCCTCCTGCCCTTGTTGGAGTCTCGCTGCCT
GCTTGTCCATTTTTCTTTTTTTTTTCATAATCGAGTGATCGGTCGTGTTG
GCTGTTGTTCCGTGGTACGCACGCACCATGCCCCGTTCGCTGGTTGCGCT
GTTGATTCTTGTTTGGTTTTCGAAGGCTTGGTACCCGAGTGCTCTTGTAC
GCGCAGACGAAGGCACCGATCATTGAACCTTGCTTGTCGGCATGGATAAA
AGGAGACTGCACCATCGGGGTGGACATCGCGCCTAATTGCGTCGGCAGAC
ACCACGCCATCGTGGACAAGGGCTTCGCTGAATGCTACACAGACGTACGG
CCTTCAGGATCGTTGCACGGTGCCCACGGGTGCTGGCCTTTTTTTCGGGG
GGGCTGTGCTGCATGGTGCTTCGGAAATGCTTCGGAGGGTCTGACTATGT
TTGCGGTCTGGGTCTTGGAGACTACAGGCACCGACCTGCGGTTCTGATTT
CTTCTTTCCTTCTGCATCGGTTGCCCCCCCCCCCCTCTGTCCCTGTTTCC
CGTCTGCTCTCTCTTGATCTCTGTAAACGGCCACCACCAACGGCAACGAC
AACATCAACGGCAACGCCACAACCGTAGGGGGCCGGCGTGGACGTTTTCT
GCGCCAGCAGCGAGGGGCTAGGGGCGGCGGCGCTGCAGGGACTGGTGGCC
CCGACCTCGGGCTACGTCGTGATACAGCCGTCCTTCGGGGAAGAGTTCGC
CGGCAACCTGGCCAAGAGTGTGGCGGAGCAGACGATGAGCGACGGCGACG
GGTTGCACGGTGAGCTGAGACATGCGTGTTGGAAGGGGAACACCGGAAGG
TTTCCCGTTCCGTGTTGCGGCGTTCGCGCCCCGGGGTGCACTCGTTCGCG
ACGCAGTCATGAGACGCTTATGGTAAACGGACACAGCATTCGAGCGTCCC
CTCCGCCGGCGAGGTCGCACGAAGAGAGGTGCAAGGCACGCGCCTTGCAC
TTCTTACCGTAGGATGTATGAATGTGTGTATGTATGTATGTATGTGTGTA
TGTATGTATGTATGTATGTATGTATGTGTGTATGTATGTATGTTTGCCTG
GTATCGTTTTCGTCGGGGCCGTTTTTTTCGTCTGCTACCGCCTTGCGTGC
CAGGTACAATTGGAGTGCTTTCGCCTGCCGCCGTAGCCGCGCCGACGCCG
TCAATGATGGGTGGCCAACCTTGGTCTTCCTTCGCCCCTGTTGGGTGTTG
CGCGCGCGCTTTTGTTGGGCATGAGTAGTTGGTCTGAACGGCTGGCTGCT
GACCAAGGAAAAATAGCCCCGCCGTCCCCTACCAGACTCCCCGACGCGAA
CACACGTTTTTCGTCTCTCCCGATCACAGGGTGCTGTGTCTTCTACATGT
CGTGCGTCGCATTTTTTGGCCTCTTCTTCCTCTTGTTTCTCTTCTTGTTT
CTTGGCAACTTATTTATCTTCTTTTCACATGACTTGTTTCTCTTCTTGTT
TCTTGGCAACTTCTTTCTCCTCTTGGCCTCTTCTTCATCTTCTTTCTCTT
CCTGGCCTCTTTTTTCTCTTCTTTCTCTTCCTGGCCTCTTTTTTCTCTTC
TTTCTCCTCTTAGGCTTTTCTTTCTCTTCTTGTTTCTCGGCCTCTTTCTT
CTCTTTTTGTTCCTTGGCCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT
CTTCTCTTCTCTTCTTGTTGTTGGCCTCGACGAGGGCGAGAACAACCGCC
CCCCCCCCCCCCCCCCCCCCAAAAATGTTGATTCTCATTCCCGCTGCATC
GAAATCGCCCCATTTTTTCACCCTCCGCCGCACCGTCGTTTGCTTTCGCG
CCCGACAAACGTCGACTACGACCAACGGCGCAGGCTGCGTGATCGACGTC
CGGGCGTCCGCCGGCGTTGAGCTGCTGCACGTCATCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11231:216..3252+

>mRNA_H-canaliculatus_F_contig11231.1111.1 ID=mRNA_H-canaliculatus_F_contig11231.1111.1|Name=mRNA_H-canaliculatus_F_contig11231.1111.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1056bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11231:216..3252+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGGCGGGGCGTTGGGGCGGCGAAAGGCTTGGGCGGCCCGGCGGAGGGT
GCCGGTGCCCGCGCACCGTCGACGGCGCTGCCTGGGAGCGGCGGTGGAGT
ACGCCGTCAGAGCGGCGGGGCGTTGGGGCGGCGAAAGGCTTGGGCGGCCC
GGCGGAGGGTGCCGGTGCCCGCGCACCGTCGACGGCGCTGCCTGGGAGCG
GCGGTGGAGTACGCCGTCAGGCTAGCTCGCACGGCGGACCGCCCAACATC
GCGTCTCCTCGTGTGCCTGGGGGGCTGCCCGAACTTCGGGCCAGGCGCCG
TGGCCCCCTGCGTCCCTGGAGCGGCGGCGGCGGAAGTGGATCCCGAGGCG
CTGGCCGCGGCCACGGACTACTTCGAAGACCTCGGGGAGAAGGCGCTGTT
GCAGGCTAGCTCGCACGGCGGACCGCCCAACATCGCGTCTCCTCGTGTGC
CTGGGGGGCTGCCCGAACTTCGGGCCAGGCGCCGTGGCCCCCTGCGTCCC
TGGAGCGGCGGCGGCGGAAGTGGATCCCGAGGCGCTGGCCGCGGCCACGG
ACTACTTCGAAGACCTCGGGGAGAAGGCGCTGTTGCAGGGGGCCGGCGTG
GACGTTTTCTGCGCCAGCAGCGAGGGGCTAGGGGCGGCGGCGCTGCAGGG
ACTGGTGGCCCCGACCTCGGGCTACGTCGTGATACAGCCGTCCTTCGGGG
AAGAGTTCGCCGGCAACCTGGCCAAGAGTGTGGCGGAGCAGACGATGAGC
GACGGCGACGGGTTGCACGGGGGCCGGCGTGGACGTTTTCTGCGCCAGCA
GCGAGGGGCTAGGGGCGGCGGCGCTGCAGGGACTGGTGGCCCCGACCTCG
GGCTACGTCGTGATACAGCCGTCCTTCGGGGAAGAGTTCGCCGGCAACCT
GGCCAAGAGTGTGGCGGAGCAGACGATGAGCGACGGCGACGGGTTGCACG
GCTGCGTGATCGACGTCCGGGCGTCCGCCGGCGTTGAGCTGCTGCACGTC
ATCGCTGCGTGATCGACGTCCGGGCGTCCGCCGGCGTTGAGCTGCTGCAC
GTCATC
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