mRNA_H-canaliculatus_F_contig11217.1102.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11217.1102.1
Unique NamemRNA_H-canaliculatus_F_contig11217.1102.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11217.1102.1 vs. uniprot
Match: D8LCK0_ECTSI (Rab11D, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK0_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 7.560e-37
Identity = 67/87 (77.01%), Postives = 74/87 (85.06%), Query Frame = 1
Query:  187 QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRPSFVGLEAWRKHLDANADPLCVSVVTGNKSDMPPEEHEVSPEEGMAYATKVPR 447
            QIWDTAGQERYASMMKTYYRKAKGSLL YD T+R SFVGLEAWRKHL+ANADP CVS+VTGNKSD+   +  VSP +G AYA +V R
Sbjct:   58 QIWDTAGQERYASMMKTYYRKAKGSLLFYDFTNRFSFVGLEAWRKHLEANADPRCVSIVTGNKSDV--SDQLVSPNDGEAYARQVSR 142          
BLAST of mRNA_H-canaliculatus_F_contig11217.1102.1 vs. uniprot
Match: A0A6H5JPX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX3_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.780e-36
Identity = 66/82 (80.49%), Postives = 73/82 (89.02%), Query Frame = 1
Query:  187 QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRPSFVGLEAWRKHLDANADPLCVSVVTGNKSDMPPEEHEVSPEEGMAYA 432
            QIWDTAGQERYASMMKTYYRKAKGSLLVYDVT+R SFVGLEAWRKHL+ANADP CVS+V GNKSD+   +  VSP++G AYA
Sbjct:   58 QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDV--SDQLVSPKDGEAYA 137          
BLAST of mRNA_H-canaliculatus_F_contig11217.1102.1 vs. uniprot
Match: A0A835YTJ1_9STRA (GTPase Ypt3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.940e-28
Identity = 59/82 (71.95%), Postives = 64/82 (78.05%), Query Frame = 1
Query:  187 QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRPSFVGLEAWRKHLDANADPLCVSVVTGNKSDMPPEEHEVSPEEGMAYA 432
            QIWDTAGQERYASMMKTYYRKAKG+LLVYDVTS+ SF  LE WRK+L+ANADP CVS+V GNK DM   E  V      AYA
Sbjct:   57 QIWDTAGQERYASMMKTYYRKAKGALLVYDVTSQSSFDSLEIWRKNLEANADPQCVSMVAGNKCDM---EGVVDEAAARAYA 135          
BLAST of mRNA_H-canaliculatus_F_contig11217.1102.1 vs. uniprot
Match: A0A836CB79_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB79_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.860e-24
Identity = 56/90 (62.22%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  175 VDGR----QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRPSFVGLEAWRKHLDANADPLCVSVVTGNKSDMPPEEHEVSPEEGMAYA 432
            VDG+    QIWDTAGQERYA+MMKTYYR+AKG++LVYDVT   SF  LE WR  L  NA P CV+VV GNK DM P    VS ++  AYA
Sbjct:   81 VDGQAVWLQIWDTAGQERYAAMMKTYYRRAKGAVLVYDVTDATSFEALELWRAALGTNAAPDCVAVVAGNKCDMEPA---VSAQQAQAYA 167          
BLAST of mRNA_H-canaliculatus_F_contig11217.1102.1 vs. uniprot
Match: A0A7S2RFG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFG9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.930e-19
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  172 SVDGR----QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRPSFVGLEAWRKHLDANADPLCVSVVTGNKSDMPPEEHEVSPEEGMAYATK 438
            +VDG     QIWDTAGQER+++MM TYYRKAKG+LL++ VT R SFV  EAWR+ +   A+P    ++ GNK D+  E  +VSPEE    A K
Sbjct:   58 TVDGEAVKAQIWDTAGQERFSTMMGTYYRKAKGALLLFSVTDRESFVDAEAWRQQVTELAEPDIEVLLVGNKVDVQ-ESRKVSPEEAQTMADK 149          
BLAST of mRNA_H-canaliculatus_F_contig11217.1102.1 vs. uniprot
Match: A0A485LS46_9STRA (Aste57867_24372 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS46_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.250e-18
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  187 QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRPSFVGLEAWRKHLDANADPLCVSVVTGNKSDMPPEEHEVSPEEGMAYAT 435
            QIWDTAGQER+ +MM TYYRKA G+LLV+DVT + +F G++ W   L   A+P   +V+ GNK+D  P +  VS  E  AYAT
Sbjct:  203 QIWDTAGQERFHAMMSTYYRKAVGALLVFDVTDKTTFDGVQKWLDQLLQVAEPGLTTVLVGNKADADPAKRAVSTVEAQAYAT 285          
BLAST of mRNA_H-canaliculatus_F_contig11217.1102.1 vs. uniprot
Match: A0A5D6Y601_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y601_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.300e-17
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 1
Query:  187 QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRPSFVGLEAWRKHLDANADPLCVSVVTGNKSDMPPEEHEVSPEEGMAYA 432
            QIWDTAGQER+ +MM TYYRKA G+LL++DV  R S +G++ W   L + A+P   +V+ GNK D+ P E  VSP+E   +A
Sbjct:  179 QIWDTAGQERFHAMMSTYYRKAVGALLIFDVRDRQSLLGVDKWLDQLLSVAEPGLHAVLVGNKCDLLPPERAVSPDEAQHFA 260          
BLAST of mRNA_H-canaliculatus_F_contig11217.1102.1 vs. uniprot
Match: K3X866_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X866_GLOUD)

HSP 1 Score: 86.3 bits (212), Expect = 5.570e-17
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  187 QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRPSFVGLEAWRKHLDANADPLCVSVVTGNKSDMPPEEHEVSPEEGMAYA 432
            QIWDTAGQER+ +MM TYYRKA G+LL++DV  R S +G+E W + L   A+P   +++ GNK D+ P E  VS EE   +A
Sbjct:  103 QIWDTAGQERFHAMMATYYRKAVGALLIFDVRDRQSLLGVEKWLEQLLNVAEPGLHAILVGNKCDIAPPERVVSTEEAEQFA 184          
BLAST of mRNA_H-canaliculatus_F_contig11217.1102.1 vs. uniprot
Match: M2Y664_GALSU (Rab family, other n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y664_GALSU)

HSP 1 Score: 85.1 bits (209), Expect = 7.680e-17
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  187 QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRPSFVGLEAWRKHLDANADPLCVSVVTGNKSDMPPEEHEVSPEEGMAYATK 438
            QIWDTAGQERY ++   YYR A G+LLVYD++ + SF+G+E W K L  +AD   V ++ GNKSD+      VS EEG  +A K
Sbjct:   63 QIWDTAGQERYRAITSAYYRGAVGALLVYDISKKESFIGVEKWLKELRDHADSNIVIMLVGNKSDLK-HLRAVSTEEGKEFAEK 145          
BLAST of mRNA_H-canaliculatus_F_contig11217.1102.1 vs. uniprot
Match: A0A024T985_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T985_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 8.980e-17
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  187 QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRPSFVGLEAWRKHLDANADPLCVSVVTGNKSDMPPEEHEVSPEEGMAYA 432
            QIWDTAGQER+ +MM TYYRKA G+LLV+DVT + +F G++ W   L   A+P   +V+ GNK+D+   +  VS  E  AYA
Sbjct:  192 QIWDTAGQERFHAMMSTYYRKAVGALLVFDVTDKTTFDGIQKWLDQLVQVAEPGLATVLVGNKADVDASKRAVSTMEAQAYA 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11217.1102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCK0_ECTSI7.560e-3777.01Rab11D, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JPX3_9PHAE1.780e-3680.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YTJ1_9STRA1.940e-2871.95GTPase Ypt3 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CB79_9STRA2.860e-2462.22Ras family-domain-containing protein n=1 Tax=Tribo... [more]
A0A7S2RFG9_9STRA3.930e-1952.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485LS46_9STRA7.250e-1853.01Aste57867_24372 protein n=1 Tax=Aphanomyces stella... [more]
A0A5D6Y601_9STRA2.300e-1751.22Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3X866_GLOUD5.570e-1751.22Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
M2Y664_GALSU7.680e-1751.19Rab family, other n=1 Tax=Galdieria sulphuraria Ta... [more]
A0A024T985_9STRA8.980e-1751.22Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11217contigH-canaliculatus_F_contig11217:3120..4266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue2.3e-21
Seed eggNOG ortholog2880.D8LCK0
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0087@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab11D, RAB family GTPase
Ec32 orthologEc-03_002620.1
Exons2
Model size624
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11217.1102.1prot_H-canaliculatus_F_contig11217.1102.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11217 3210..4041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928802.091855-UTR-H-canaliculatus_F_contig11217:3119..32091622928802.091855-UTR-H-canaliculatus_F_contig11217:3119..3209Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11217 3120..3209 -
1696845570.4443815-UTR-H-canaliculatus_F_contig11217:3119..32091696845570.4443815-UTR-H-canaliculatus_F_contig11217:3119..3209Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11217 3120..3209 -
1622928802.1481168-UTR-H-canaliculatus_F_contig11217:4041..42661622928802.1481168-UTR-H-canaliculatus_F_contig11217:4041..4266Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11217 4042..4266 -
1696845570.4763062-UTR-H-canaliculatus_F_contig11217:4041..42661696845570.4763062-UTR-H-canaliculatus_F_contig11217:4041..4266Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11217 4042..4266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928802.1111953-CDS-H-canaliculatus_F_contig11217:3209..34341622928802.1111953-CDS-H-canaliculatus_F_contig11217:3209..3434Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11217 3210..3434 -
1696845570.454485-CDS-H-canaliculatus_F_contig11217:3209..34341696845570.454485-CDS-H-canaliculatus_F_contig11217:3209..3434Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11217 3210..3434 -
1622928802.1295125-CDS-H-canaliculatus_F_contig11217:3957..40411622928802.1295125-CDS-H-canaliculatus_F_contig11217:3957..4041Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11217 3958..4041 -
1696845570.4667747-CDS-H-canaliculatus_F_contig11217:3957..40411696845570.4667747-CDS-H-canaliculatus_F_contig11217:3957..4041Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11217 3958..4041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11217.1102.1

>prot_H-canaliculatus_F_contig11217.1102.1 ID=prot_H-canaliculatus_F_contig11217.1102.1|Name=mRNA_H-canaliculatus_F_contig11217.1102.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MMKTYYRKAKGSLLVYDVTSRPSFVGLEAWRKHLDANADPLCVSVVTGNK
SDMPPEEHEVSPEEGMAYATKVPRPLPLPLPCTQTRTLEQTNERAMHLLL
LR*
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mRNA from alignment at H-canaliculatus_F_contig11217:3120..4266-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11217.1102.1 ID=mRNA_H-canaliculatus_F_contig11217.1102.1|Name=mRNA_H-canaliculatus_F_contig11217.1102.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1147bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11217:3120..4266- (Hapterophycus canaliculatus Oshoro5f female)
GTCTCGGCACCCACCTCGACAATCCTCCCCGCGGGAGATAATAACGCCTC CGTGCGTGATCTTAACACGCGCCTTTTTCCTGCTGACTGATGGAGTCCGT GTTCCCTCGCGTCGGCGTCGTCGTCTCTCGCAACTAACCGGATCGTCCTG CCTGCGCGACGGCGGCGTCGATCGGTCGACGGGCGTCAGATTTGGGACAC GGCGGGCCAGGAGCGATACGCGAGCATGATGAAGACGTACTACCGAAAGG CCAAGGGGTCGCTACTAGTCTACGACGTCACCAGCAGACCGTCCTTCGTG GGGCTCGAGGTGGGTGGTCCTGCTGTTGTTGGTGTTGTTCTTGTTGTTCT TCTTGCTCTTGTTATTTTGAAAGAAAATATGACAACACCGCTAGAACACC TCCTGAGGTTCGTCCTGTACCTCCTGAGGTTCGTCCTGTGAGGCGTAGCT CGAGGCTTCTACTGAGTTCAGACCAGTGAGGGTTCATTGATGTTTCGTTA TTTTCCTCGTGGTGACCATTGTTGGTACTCCCGCCGCTGTTGCTGCTCCC GTCGTGGCCGTAAAAGTTCGTAACTCCCCGGAAGCTCTTTTCCCCCACTT GGTTTGGTGCGGCTGCCGGAGAAGCACAATCGTTTGCTGGTTCTGCCTCG GCCGCCGCCAAGGCCGTTACCTCCGCTCCGATCGCGCTGACCCATATACG TGCACACCAAACACAGCTGCCGCCGGCGCCGCTACTTCTCTTTCGACGCT CGTCGTGTGGAATGCTCGATAATCCAAGGGTATCGTTGCCGCCTAAGCTT ACGCCGCCGCCGCTTCTGCTATCTCACCACAGGCTTGGCGCAAGCACCTG GACGCGAACGCGGACCCGCTCTGCGTGTCTGTGGTAACGGGCAACAAGTC GGACATGCCCCCGGAGGAGCACGAGGTCTCCCCCGAGGAAGGGATGGCGT ACGCCACGAAGGTGCCCCGACCCTTACCTTTACCTCTACCCTGCACCCAG ACACGCACGCTCGAACAAACGAACGAGCGAGCGATGCACCTGCTGCTGTT GCGCTGATCGGCGGCGGGTTTGTTGGTTCCGACGTTTTTGCTTTTCGGCG CTTCTTCGTTCCCCCCTCCTCGGTCCGGTGGGTCGTCGCAACCTGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11217:3120..4266-

>mRNA_H-canaliculatus_F_contig11217.1102.1 ID=mRNA_H-canaliculatus_F_contig11217.1102.1|Name=mRNA_H-canaliculatus_F_contig11217.1102.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11217:3120..4266- (Hapterophycus canaliculatus Oshoro5f female)
ATGATGAAGACGTACTACCGAAAGGCCAAGGGGTCGCTACTAGTCTACGA
CGTCACCAGCAGACCGTCCTTCGTGGGGCTCGAGATGATGAAGACGTACT
ACCGAAAGGCCAAGGGGTCGCTACTAGTCTACGACGTCACCAGCAGACCG
TCCTTCGTGGGGCTCGAGGCTTGGCGCAAGCACCTGGACGCGAACGCGGA
CCCGCTCTGCGTGTCTGTGGTAACGGGCAACAAGTCGGACATGCCCCCGG
AGGAGCACGAGGTCTCCCCCGAGGAAGGGATGGCGTACGCCACGAAGGTG
CCCCGACCCTTACCTTTACCTCTACCCTGCACCCAGACACGCACGCTCGA
ACAAACGAACGAGCGAGCGATGCACCTGCTGCTGTTGCGCTGAGCTTGGC
GCAAGCACCTGGACGCGAACGCGGACCCGCTCTGCGTGTCTGTGGTAACG
GGCAACAAGTCGGACATGCCCCCGGAGGAGCACGAGGTCTCCCCCGAGGA
AGGGATGGCGTACGCCACGAAGGTGCCCCGACCCTTACCTTTACCTCTAC
CCTGCACCCAGACACGCACGCTCGAACAAACGAACGAGCGAGCGATGCAC
CTGCTGCTGTTGCGCTGA
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