mRNA_H-canaliculatus_F_contig11190.1072.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11190.1072.1
Unique NamemRNA_H-canaliculatus_F_contig11190.1072.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11190.1072.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 6.090e-44
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:   34 MATTSKPTYSVMVFDAIKALKERGGSSLPAIKKQIMATYPTLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 270
            MATT+KPTYSVMVFDAIKALKERGGSSLPA+KKQIMATYP+LNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA
Sbjct:    1 MATTAKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
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BLAST of mRNA_H-canaliculatus_F_contig11190.1072.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.410e-36
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:   67 MVFDAIKALKERGGSSLPAIKKQIMATYPTLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 270
            MVFDAIKALKERGGSSLPA+KKQIMATYP+LNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
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BLAST of mRNA_H-canaliculatus_F_contig11190.1072.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.950e-34
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:   43 TSKPTYSVMVFDAIKALKERGGSSLPAIKKQIMATYPTLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 270
            T+KPTY+VMVFDAIK LKER GSS+ AIKK I ATYPTLNFTPHQMR ALKKG ESGKFIK+K+SYKLSPEAKKPA
Sbjct:   96 TAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPA 171
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BLAST of mRNA_H-canaliculatus_F_contig11190.1072.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 6.430e-34
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:   34 MATTSKPTYSVMVFDAIKALKERGGSSLPAIKKQIMATYPTLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 270
            MA+T KPTY+ MVFDAIK LKER GSS+ AIKK I ATYPTLNFTPHQMRSALKKG ESGKFIK+K+SYKLS EAKKPA
Sbjct:    1 MAST-KPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 78
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BLAST of mRNA_H-canaliculatus_F_contig11190.1072.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.570e-29
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:   67 MVFDAIKALKERGGSSLPAIKKQIMATYPTLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 270
            MVFDAIK LKER GSS+ AIKK I ATYPTLNFTPHQMRSALKKG ESGKF+K+K+SYKLS EAKKPA
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPA 68
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11190.1072.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.490e-28
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   67 MVFDAIKALKERGGSSLPAIKKQIMATYPTLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 267
            MVFDAIK+LKER GSS+ AIKK I ATYP LNFTPHQMRSALKKG E+GKFIKVKSSYKLS EAKKP
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKP 67
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BLAST of mRNA_H-canaliculatus_F_contig11190.1072.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 4.410e-28
Identity = 56/72 (77.78%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:   52 PTYSVMVFDAIKALKERGGSSLPAIKKQIMATYPTLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 267
            PTYS M   AI ALKER GSS+PAIKK I ATYPTLNF PHQ+R ALKKGTE+G FIKVK+SYK+SPEAKKP
Sbjct:    2 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
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BLAST of mRNA_H-canaliculatus_F_contig11190.1072.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 7.510e-22
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:   52 PTYSVMVFDAIKALKERGGSSLPAIKKQIMATYPTLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 270
            PTY  M  +A+KALKER GSSL AIKK I A+YP+L FT H MRSALKKG ESGKFIKVK+SYKLS   ++PA
Sbjct:    2 PTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPA 74
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11190.1072.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.040e-21
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:   67 MVFDAIKALKERGGSSLPAIKKQIMATYPTLNFTPHQMRSALKKGTESGKFIKVKSSYKLSP 252
            MVFDAIK LKER GSS+ A+KK I ATYP L+FTPHQMRSALKKG E+GKFIKV+ +  L+P
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLAP 62
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11190.1072.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.860e-20
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   52 PTYSVMVFDAIKALKERGGSSLPAIKKQIMATYPTLNFTPHQMRSALKKGTESGKFIKVKSSYKLS 249
            PTY  M  +A+KALKER GSSL AIKK I A+YP+L FT H +RSALKKG ESGKFIKVK+SYKLS
Sbjct:    2 PTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLS 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11190.1072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4I5_ECTSI6.090e-4496.20H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JHR9_9PHAE2.410e-3697.06H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KCU1_9PHAE3.950e-3484.21H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQ80_ECTSI6.430e-3482.28Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KST0_9PHAE3.570e-2983.82H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI2.490e-2885.07H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI4.410e-2877.78H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI7.510e-2269.86H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE1.040e-2172.58H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE2.860e-2072.73H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11190contigH-canaliculatus_F_contig11190:2386..3909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue1.3e-34
Seed eggNOG ortholog2880.D7G4I5
Preferred nameH1
KEGG koko:K11275
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size508
Cds size507
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11190.1072.1prot_H-canaliculatus_F_contig11190.1072.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11190 2386..3909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928798.1229644-CDS-H-canaliculatus_F_contig11190:2385..26671622928798.1229644-CDS-H-canaliculatus_F_contig11190:2385..2667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11190 2386..2667 -
1696845568.576294-CDS-H-canaliculatus_F_contig11190:2385..26671696845568.576294-CDS-H-canaliculatus_F_contig11190:2385..2667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11190 2386..2667 -
1622928798.136169-CDS-H-canaliculatus_F_contig11190:3087..32461622928798.136169-CDS-H-canaliculatus_F_contig11190:3087..3246Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11190 3088..3246 -
1696845568.5899508-CDS-H-canaliculatus_F_contig11190:3087..32461696845568.5899508-CDS-H-canaliculatus_F_contig11190:3087..3246Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11190 3088..3246 -
1622928798.147956-CDS-H-canaliculatus_F_contig11190:3843..39091622928798.147956-CDS-H-canaliculatus_F_contig11190:3843..3909Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11190 3844..3909 -
1696845568.6055715-CDS-H-canaliculatus_F_contig11190:3843..39091696845568.6055715-CDS-H-canaliculatus_F_contig11190:3843..3909Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11190 3844..3909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11190.1072.1

>prot_H-canaliculatus_F_contig11190.1072.1 ID=prot_H-canaliculatus_F_contig11190.1072.1|Name=mRNA_H-canaliculatus_F_contig11190.1072.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=169bp
PPSIRNRTAVIMATTSKPTYSVMVFDAIKALKERGGSSLPAIKKQIMATY
PTLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPAPKKKVVKKVV
KKVVKKKPAKKKVAKKPALKKTVTKKKPAAKKATTTKSTATKKTVTKKKP
APKKKASTPKKKAAPKKA*
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mRNA from alignment at H-canaliculatus_F_contig11190:2386..3909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11190.1072.1 ID=mRNA_H-canaliculatus_F_contig11190.1072.1|Name=mRNA_H-canaliculatus_F_contig11190.1072.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1524bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11190:2386..3909- (Hapterophycus canaliculatus Oshoro5f female)
CCACCCAGCATACGGAACCGAACAGCAGTAATCATGGCGACGACGTCCAA
GCCGACCTACTCCGTGGTGAGTTACGCGAACAAGGTTTTCTATTCACTGA
CGCCGCAATCGGCTGCTGCGCGGAGGACTTGGCACAGTTTTTTTTTAGAC
CACGTGTTAAGACGAAAGTAGCGAATAGGGAGCGACGGAGCTGGCTGATT
TTCTCCAGATGAACGCTCGTAGTACCTCCCCATGACAACAGGTAGCTGTA
AAGACTAGGTCGAATTCATTTGTTGGATTTGCATGTTGATGTGCATACGG
TTTTGTGAAGAGGATTTTTGTTCCCATTCTGCGTCAACGTCGTGTGTGAG
CACACGAGGGAGCAGGCATGGAATGCCACGAAGAGAGTTGACCGTTTACT
TTATGACCTCCAACGGTTCATGACGATGTGCTGGTAATCCCGCACACCCT
AGGAGCCAAGTTATCGCTAGGTACATGTGCAGCTCCCGTGCCGGGTGTTT
TGTTTGGTTAAATACAACGCTGATGGGTCGGGTACAAAGTGTTCTTATCG
TGGCCCAGAATAACGTAAATAAGTAGTTGGCTCCTGGTCCAGTTCCAACT
TTCGAAAAACGTAACGGCCATAACTCCATTTTTCGCTCCTTTGCTCCTCG
CCGCTCTCGTCAGATGGTGTTCGATGCCATCAAGGCTCTCAAGGAACGTG
GGGGTTCATCCCTCCCTGCTATCAAGAAGCAGATCATGGCCACCTACCCG
ACGCTTAACTTTACTCCCCACCAGATGCGGAGCGCTCTCAAGAAGGGTAC
CGAGTCCGGCAAGTTCATCAAGGTGAGACTAGCCCATCGTAGGCATAACT
TCGTACACCCACACACAAGAGGCAGCAACGAAAACTGTGTTGAGATCCCC
CACGCGGAGATGATTCAACTAAACTACGGTTGGTGTCGAGAACTTGTGGG
GCCGTCGTTTACCACACTAGTATTAGTTGCAGAACACCTTCACGGCGTTC
TTACTCGGCTCTTCAAGTAACAGCTTTCATAGGGTTTTGGGCGACAAATT
ACGTAAAGTCCCGTCATGGTGCCAGGTTCAAACCAACGGACAGGCACACT
ACGCCATTCGACTGCCAGTCACTATTCTCCCAACGCGCGATCGTCGAGAA
GCCTCACGAGCTTCGACCGCTTGCCTCTTCCATTCGCTCCGTTCTTCAAG
TACATCGTCCGCCTCTCATGACGCTTCTGCCCCTGACAACAGGTGAAGAG
CTCGTACAAGCTGAGCCCGGAGGCCAAGAAGCCCGCCCCAAAGAAGAAGG
TCGTGAAAAAGGTTGTCAAGAAGGTGGTGAAGAAGAAGCCCGCCAAGAAG
AAGGTAGCCAAGAAGCCTGCCCTCAAGAAGACGGTGACTAAGAAGAAGCC
GGCCGCCAAGAAGGCCACGACCACCAAGTCCACGGCCACCAAGAAGACCG
TGACGAAGAAGAAGCCTGCCCCAAAGAAAAAGGCCTCCACGCCCAAGAAG
AAGGCTGCCCCGAAGAAGGCCTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11190:2386..3909-

>mRNA_H-canaliculatus_F_contig11190.1072.1 ID=mRNA_H-canaliculatus_F_contig11190.1072.1|Name=mRNA_H-canaliculatus_F_contig11190.1072.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1014bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11190:2386..3909- (Hapterophycus canaliculatus Oshoro5f female)
CCACCCAGCATACGGAACCGAACAGCAGTAATCATGGCGACGACGTCCAA
GCCGACCTACTCCGTGCCACCCAGCATACGGAACCGAACAGCAGTAATCA
TGGCGACGACGTCCAAGCCGACCTACTCCGTGATGGTGTTCGATGCCATC
AAGGCTCTCAAGGAACGTGGGGGTTCATCCCTCCCTGCTATCAAGAAGCA
GATCATGGCCACCTACCCGACGCTTAACTTTACTCCCCACCAGATGCGGA
GCGCTCTCAAGAAGGGTACCGAGTCCGGCAAGTTCATCAAGATGGTGTTC
GATGCCATCAAGGCTCTCAAGGAACGTGGGGGTTCATCCCTCCCTGCTAT
CAAGAAGCAGATCATGGCCACCTACCCGACGCTTAACTTTACTCCCCACC
AGATGCGGAGCGCTCTCAAGAAGGGTACCGAGTCCGGCAAGTTCATCAAG
GTGAAGAGCTCGTACAAGCTGAGCCCGGAGGCCAAGAAGCCCGCCCCAAA
GAAGAAGGTCGTGAAAAAGGTTGTCAAGAAGGTGGTGAAGAAGAAGCCCG
CCAAGAAGAAGGTAGCCAAGAAGCCTGCCCTCAAGAAGACGGTGACTAAG
AAGAAGCCGGCCGCCAAGAAGGCCACGACCACCAAGTCCACGGCCACCAA
GAAGACCGTGACGAAGAAGAAGCCTGCCCCAAAGAAAAAGGCCTCCACGC
CCAAGAAGAAGGCTGCCCCGAAGAAGGCCTAAGTGAAGAGCTCGTACAAG
CTGAGCCCGGAGGCCAAGAAGCCCGCCCCAAAGAAGAAGGTCGTGAAAAA
GGTTGTCAAGAAGGTGGTGAAGAAGAAGCCCGCCAAGAAGAAGGTAGCCA
AGAAGCCTGCCCTCAAGAAGACGGTGACTAAGAAGAAGCCGGCCGCCAAG
AAGGCCACGACCACCAAGTCCACGGCCACCAAGAAGACCGTGACGAAGAA
GAAGCCTGCCCCAAAGAAAAAGGCCTCCACGCCCAAGAAGAAGGCTGCCC
CGAAGAAGGCCTAA
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