mRNA_H-canaliculatus_F_contig11177.1061.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11177.1061.1
Unique NamemRNA_H-canaliculatus_F_contig11177.1061.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11177.1061.1 vs. uniprot
Match: A0A6H5K8F1_9PHAE (VDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8F1_9PHAE)

HSP 1 Score: 424 bits (1090), Expect = 8.260e-147
Identity = 208/230 (90.43%), Postives = 220/230 (95.65%), Query Frame = 1 
Query:    1 KVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPKNEAHLVNKDNDYLHYRDDWYVLDSEPNSHVLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERVKAKSEAAGIEWSRWSYNDNTCKPQTSETAELLREKYAKKLLLSEGQQLQEQLTAVRGYAAQEVSEVEQSTLEKLEDLKQEYEVEVEQLGSDLATAFETELRLFEEGLANEASTVLNEATSVSTG 690
            +VHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQ F QDPKN AHLVNKDN+YLHYRDDWY+LDSEPNSHVLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERVKAKSEAAGI+W RW YNDNTCKPQTSETAE+LREKYAKKL+LSEG+QLQEQLTAVRGYAAQEV+EVE STLEKLEDLKQEYEVEVEQLG+DLA AFETELRLFEEGLA EA+TV+NEATS+  G
Sbjct:  173 QVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQTFDQDPKNPAHLVNKDNEYLHYRDDWYILDSEPNSHVLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERVKAKSEAAGIKWERWQYNDNTCKPQTSETAEMLREKYAKKLILSEGKQLQEQLTAVRGYAAQEVNEVESSTLEKLEDLKQEYEVEVEQLGTDLAAAFETELRLFEEGLAGEANTVINEATSIIKG 402
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BLAST of mRNA_H-canaliculatus_F_contig11177.1061.1 vs. uniprot
Match: A0A835ZCN5_9STRA (Violaxanthin de-epoxidase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN5_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.620e-67
Identity = 115/230 (50.00%), Postives = 153/230 (66.52%), Query Frame = 1 
Query:    1 KVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPKNEAHLVNKDNDYLHYRDDWYVLDSEPNSHVLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERVKAKSEAAGIEWSRWSYNDNTCKPQTSETAELLREKYAKKLLLSEGQQLQEQLTAVRGYAAQEVSEVEQ---STLEKLEDLKQEYEVEVEQLGSDLATAFETELRLFEEGLANEASTVLNEATSV 681
            +VH+F +P PG++ GKL WRIKEPDGEFFTRD VQ+F QD  N A L+N DN+YLHY+DDWY+LD+ P+SHVLV YRG NDAW GYGG  LYT+D +    +V R++A  + A I+WS +   DN+CKPQT + AEL R +Y+KKLL  EGQQL EQLTA+RG+A   + + E+   + L+ LEDL + Y+ E+     +L      E    + G   EA  +  E   +
Sbjct:  165 QVHYFVNPSPGQIYGKLKWRIKEPDGEFFTRDTVQRFIQDKDNPALLLNHDNEYLHYQDDWYILDAVPDSHVLVYYRGQNDAWTGYGGAVLYTRDASYDRALVPRLEAACKKANIKWSDFQATDNSCKPQTRDPAEL-RAEYSKKLLDMEGQQLGEQLTALRGFAVDSIQKEEKDAGAALKALEDLAESYQNEIAFDALELQDTLGQEFNELKAGAEAEAKFIKEEVKEI 393
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BLAST of mRNA_H-canaliculatus_F_contig11177.1061.1 vs. uniprot
Match: A0A7S2SKA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA3_9STRA)

HSP 1 Score: 203 bits (517), Expect = 6.270e-61
Identity = 99/167 (59.28%), Postives = 126/167 (75.45%), Query Frame = 1 
Query:    1 KVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPKNEAHLVNKDNDYLHYRDDWYVLDSEPNSHVLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERVKAKSEAAGIEWSRWSYNDNTCKPQTSETAELLREKYAKKLLLSEGQQLQEQLTAVRGYAAQ 501
            +VHFF SPKPG L GKLNWRI EPDGEFFTR+ VQ+F+QDP     L N DN+YLHY+DDWY+LDS+ +  VLV YRG NDAWDGYGG  LYT+  TVP  I+ RV+A +E AG+++S++   DN+C+P  ++ AEL R +YAKK L+   + LQEQLTA+RG + Q
Sbjct:  150 QVHFFTSPKPGLLYGKLNWRIVEPDGEFFTRNAVQRFKQDPSMPGVLYNHDNEYLHYQDDWYILDSDKD-FVLVYYRGRNDAWDGYGGAVLYTRQPTVPTAIIPRVEAAAERAGLDFSKFVQTDNSCRPAETDVAEL-RGEYAKKQLILGEKALQEQLTALRGLSTQ 314
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BLAST of mRNA_H-canaliculatus_F_contig11177.1061.1 vs. uniprot
Match: A0A0G4HUS0_9ALVE (VDE domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HUS0_9ALVE)

HSP 1 Score: 206 bits (523), Expect = 3.080e-60
Identity = 101/184 (54.89%), Postives = 133/184 (72.28%), Query Frame = 1 
Query:    1 KVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPKNEAHLVNKDNDYLHYRDDWYVLDSEPNSHVLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERVKAKSEAAGIEWSRWSYNDNTCKPQTSETAELLREKYAKKLLLSEGQQLQEQLTAVRGYAAQEVSEVEQSTLEKLEDLK 552
            + HFFNSP+PG+L GKL WRI +PDGEFFTRD VQKF Q  +++  L N DN+YLHY+DDWY+LD EP + VL+ YRGSNDAWDGYGG T+YT+  ++ P +V R++   E AGI+WS +S  DN+C PQ  + A +LR ++AK+ LL+    +QEQLTAVRGYA   V   E+   + L DL+
Sbjct:  270 QTHFFNSPEPGRLFGKLYWRITQPDGEFFTRDTVQKFVQQ-RDKGLLFNHDNEYLHYKDDWYILDWEPENFVLIYYRGSNDAWDGYGGATVYTRAPSLDPKLVPRIEQACEKAGIKWSDFSLTDNSCGPQQKD-ASILRAQWAKRQLLTAESDVQEQLTAVRGYALNSVVSSERGAEQILADLE 451
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BLAST of mRNA_H-canaliculatus_F_contig11177.1061.1 vs. uniprot
Match: A0A1E7FV42_9STRA (Violaxanthin de-epoxidase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FV42_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.660e-52
Identity = 89/177 (50.28%), Postives = 120/177 (67.80%), Query Frame = 1 
Query:    1 KVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPKNEAHLVNKDNDYLHYRDDWYVLDSEPNSH-------VLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERVKAKSEAAGIEWSR-WSYNDNTCKPQTSETAELLREKYAKKLLLSEGQQLQEQLTAVRGYAAQEV 507
            +VHFF    PGK  GKLNWRI+EPDGEFF RD VQ+F QDPK  AHLVN DN+YLHY+DDWY+LD EP+++         V YRGSNDAWDGYGG  +YT++  +P  ++ R++  ++  G ++ + ++  DNTCK   ++ + LL+EK+A K+LL   Q L  Q T  RG AA  +
Sbjct:  228 QVHFFTETAPGKFYGKLNWRIEEPDGEFFNRDAVQEFIQDPKQPAHLVNHDNEYLHYQDDWYILDYEPDNNPTNTPPFAFVYYRGSNDAWDGYGGVVVYTREAKLPDSLLPRMREAAKKIGYDFDKDFAVTDNTCKSLDNQDSILLKEKFAGKVLLQTEQSLAAQATKFRGNAANSI 404
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BLAST of mRNA_H-canaliculatus_F_contig11177.1061.1 vs. uniprot
Match: A0A7S3UXM0_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXM0_HETAK)

HSP 1 Score: 184 bits (468), Expect = 3.820e-52
Identity = 87/177 (49.15%), Postives = 120/177 (67.80%), Query Frame = 1 
Query:    1 KVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPKNEAHLVNKDNDYLHYRDDWYVLDSEPNSHVLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERVKAKSEAAGIEWSRWSYNDNTCKPQTSETAELLREKYAKKLLLSEGQQLQEQLTAVRGYAAQEVSEVEQSTL 531
            +VHFF +P P  +V K+NWRI EPDGE F++ VVQ F QDP+    L N DN++LHY+DDWY++D EPN  + V YRGSNDAWDGYGG  +YT   ++ P  V R+ A S+A G +W+ ++  DN+C    +E+A +LR +YAKK L+ + + LQEQLTA R   A  + + E+  L
Sbjct:  216 QVHFFEAPTPTDMVAKINWRITEPDGEVFSKSVVQTFVQDPEVPGILYNHDNEFLHYQDDWYIVDMEPNEFIYVYYRGSNDAWDGYGGAVVYTTQPSLDPKYVPRMVAASKAVGKDWADFTLTDNSCPATPTESATVLRAEYAKKQLILKEKSLQEQLTAARYSTASTIEKEEKELL 392
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BLAST of mRNA_H-canaliculatus_F_contig11177.1061.1 vs. uniprot
Match: A0A1B1Q5V0_9STRA (Violaxanthin de-epoxidase n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1B1Q5V0_9STRA)

HSP 1 Score: 184 bits (466), Expect = 5.670e-52
Identity = 88/162 (54.32%), Postives = 115/162 (70.99%), Query Frame = 1 
Query:    1 KVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPKNEAHLVNKDNDYLHYRDDWYVLDSEPNSHVLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERVKAKSEAAGIEWSRWSYNDNTCKPQTSETAELLREKYAKKLLLSEGQQLQEQLTAVR 486
            +VHFF + +  KL GKLNWRI EPDGEFFTRD VQ+F QDPK    L N DN+YLHY+DDWY+LD EP+  + + YRG NDAW GYGGG +YT+  +VPP   ER+ A    AG++++++   DNTC  Q S+   +LR ++A++L L+E QQLQE LT  R
Sbjct:  225 QVHFF-TVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYILDHEPDQFIAIFYRGQNDAWTGYGGGVVYTRGPSVPPKYKERISAAFAKAGVDYAKFQDVDNTCSEQ-SKNPTVLRAEFARRLFLTEEQQLQEALTTAR 384
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BLAST of mRNA_H-canaliculatus_F_contig11177.1061.1 vs. uniprot
Match: A0A0G4F7V7_VITBC (VDE domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F7V7_VITBC)

HSP 1 Score: 181 bits (460), Expect = 1.310e-51
Identity = 83/166 (50.00%), Postives = 118/166 (71.08%), Query Frame = 1 
Query:    1 KVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPKNEAHLVNKDNDYLHYRDDWYVLDSEPNSHVLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERVKAKSEAAGIEWSRWSYNDNTCKPQTSETAELLREKYAKKLLLSEGQQLQEQLTAVRGYAA 498
            +VHFF++P PG++ GKL WRI EPDGEFFTRD VQ+F Q  +++  L N DN+YLHY+DDWY++D EP+  + + YRG NDAW GYGG  +Y++D   P    ER+      AG+++ +++  DN+C+P   ++   LR +YAKKLLL   + +QE+LT+VRGYAA
Sbjct:  198 QVHFFDAPSPGRIYGKLYWRITEPDGEFFTRDTVQRFVQQ-EDKGLLFNHDNEYLHYQDDWYIIDYEPDDFIAIYYRGRNDAWIGYGGAVVYSRDAAFPERHRERISNAFSKAGVDFQKFALTDNSCRP-LDKSPSFLRAQYAKKLLLKAERNIQEELTSVRGYAA 361
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BLAST of mRNA_H-canaliculatus_F_contig11177.1061.1 vs. uniprot
Match: A0A7S0C8P1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8P1_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.480e-51
Identity = 91/178 (51.12%), Postives = 118/178 (66.29%), Query Frame = 1 
Query:    1 KVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPKNEAHLVNKDNDYLHYRDDWYVLDSEPNSH-------VLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERV-KAKSEAAGIEWSR-WSYNDNTCKPQTSETAELLREKYAKKLLLSEGQQLQEQLTAVRGYAAQEV 507
            +VHFF    PGK  GKLNWRI+EPDGEFF+RD +Q+F QDP   AHLVN DN+YLHY+DDWY+LD EP  +        LV YRGSNDAWDGYGG  +YTK   +P  ++ R+ K+ ++    +W + ++  DNTCK QT +   L RE++A K+ +    QLQ+QL  VRG A   V
Sbjct:  236 QVHFFTETSPGKFFGKLNWRIEEPDGEFFSRDALQRFVQDPDWPAHLVNHDNEYLHYKDDWYILDFEPEGNPTNTPPFALVYYRGSNDAWDGYGGAFVYTKAAKLPEELIPRLRKSVTKVNNWDWDKDFTVTDNTCKTQTKDDVILKREQFAGKVAIQTEAQLQQQLVLVRGAATNNV 413
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BLAST of mRNA_H-canaliculatus_F_contig11177.1061.1 vs. uniprot
Match: A0A7S4AXJ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXJ6_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.610e-51
Identity = 93/208 (44.71%), Postives = 128/208 (61.54%), Query Frame = 1 
Query:    1 KVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPKNEAHLVNKDNDYLHYRDDWYVLDSEPNSH-------VLVVYRGSNDAWDGYGGGTLYTKDKTVPPGIVERVKAKSEAAGIEWSR-WSYNDNTCKPQTSETAELLREKYAKKLLLSEGQQLQEQLTAVRGYAAQEVS----------EVEQSTLEKLEDLKQEYEVE 570
            +VHFF    PGK  GKLNWRI+EPDGEFFTRD VQ+F QDP+   HL+N DN+YLHY+DDWY+LD E + +        LV YRGSNDAWDGYGG  +YT+D  +P  ++ R++  ++  G ++ + ++  DN+CK        LLRE++A K+LL+  + +Q Q T  RG A   +           +V Q   EKL    Q++E E
Sbjct:  220 QVHFFTETAPGKFYGKLNWRIEEPDGEFFTRDAVQEFVQDPEQPGHLINHDNEYLHYKDDWYILDYEYDDNEAGLPPFALVYYRGSNDAWDGYGGAVVYTRDSKLPDSLLPRLRESAKKVGFDYDKDFTATDNSCKAVDQGENILLREQFAGKVLLNTEKSVQAQATKFRGNAMNSIKAQKIFFSNEGKVAQEAFEKLSQEVQKFEAE 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11177.1061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8F1_9PHAE8.260e-14790.43VDE domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZCN5_9STRA1.620e-6750.00Violaxanthin de-epoxidase chloroplast n=1 Tax=Trib... [more]
A0A7S2SKA3_9STRA6.270e-6159.28Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4HUS0_9ALVE3.080e-6054.89VDE domain-containing protein n=1 Tax=Chromera vel... [more]
A0A1E7FV42_9STRA1.660e-5250.28Violaxanthin de-epoxidase n=1 Tax=Fragilariopsis c... [more]
A0A7S3UXM0_HETAK3.820e-5249.15Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A1B1Q5V0_9STRA5.670e-5254.32Violaxanthin de-epoxidase n=1 Tax=Nannochloropsis ... [more]
A0A0G4F7V7_VITBC1.310e-5150.00VDE domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A7S0C8P1_9STRA1.480e-5151.12Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4AXJ6_9STRA3.610e-5144.71Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11177contigH-canaliculatus_F_contig11177:374..4002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score433.0
Seed ortholog evalue9.1e-119
Seed eggNOG ortholog2880.D7FY70
Preferred nameVDE
KEGG rclassRC01624,RC03037
KEGG koko:K09839
KEGG ReactionR07178,R07179,R10055
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009507,GO:0009534,GO:0009536,GO:0009579,GO:0009628,GO:0009987,GO:0010028,GO:0015994,GO:0016108,GO:0016116,GO:0016122,GO:0016491,GO:0019752,GO:0019904,GO:0031976,GO:0031977,GO:0031984,GO:0032787,GO:0033013,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046422,GO:0046483,GO:0050896,GO:0051186,GO:0055114,GO:0071704,GO:1901360,GO:1901564
EggNOG free text desc.violaxanthin de-epoxidase activity
EggNOG OGs28K1H@1,2QSFY@2759
EC1.23.5.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionviolaxanthin de-epoxidase, chloroplast precursor
Ec32 orthologEc-24_003580.1
Exons6
Model size693
Cds size693
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11177.1061.1prot_H-canaliculatus_F_contig11177.1061.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11177 374..4002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928796.0154068-CDS-H-canaliculatus_F_contig11177:373..4691622928796.0154068-CDS-H-canaliculatus_F_contig11177:373..469Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 374..469 -
1696845567.6470094-CDS-H-canaliculatus_F_contig11177:373..4691696845567.6470094-CDS-H-canaliculatus_F_contig11177:373..469Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 374..469 -
1622928796.0287156-CDS-H-canaliculatus_F_contig11177:1544..16761622928796.0287156-CDS-H-canaliculatus_F_contig11177:1544..1676Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 1545..1676 -
1696845567.6614523-CDS-H-canaliculatus_F_contig11177:1544..16761696845567.6614523-CDS-H-canaliculatus_F_contig11177:1544..1676Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 1545..1676 -
1622928796.0408056-CDS-H-canaliculatus_F_contig11177:2078..21531622928796.0408056-CDS-H-canaliculatus_F_contig11177:2078..2153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 2079..2153 -
1696845567.6726234-CDS-H-canaliculatus_F_contig11177:2078..21531696845567.6726234-CDS-H-canaliculatus_F_contig11177:2078..2153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 2079..2153 -
1622928796.0510623-CDS-H-canaliculatus_F_contig11177:2735..28431622928796.0510623-CDS-H-canaliculatus_F_contig11177:2735..2843Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 2736..2843 -
1696845567.6880245-CDS-H-canaliculatus_F_contig11177:2735..28431696845567.6880245-CDS-H-canaliculatus_F_contig11177:2735..2843Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 2736..2843 -
1622928796.0618837-CDS-H-canaliculatus_F_contig11177:3010..31171622928796.0618837-CDS-H-canaliculatus_F_contig11177:3010..3117Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 3011..3117 -
1696845567.6996925-CDS-H-canaliculatus_F_contig11177:3010..31171696845567.6996925-CDS-H-canaliculatus_F_contig11177:3010..3117Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 3011..3117 -
1622928796.0729623-CDS-H-canaliculatus_F_contig11177:3827..40021622928796.0729623-CDS-H-canaliculatus_F_contig11177:3827..4002Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 3828..4002 -
1696845567.7113345-CDS-H-canaliculatus_F_contig11177:3827..40021696845567.7113345-CDS-H-canaliculatus_F_contig11177:3827..4002Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11177 3828..4002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11177.1061.1

>prot_H-canaliculatus_F_contig11177.1061.1 ID=prot_H-canaliculatus_F_contig11177.1061.1|Name=mRNA_H-canaliculatus_F_contig11177.1061.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=231bp
KVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPKNEAHLVNK
DNDYLHYRDDWYVLDSEPNSHVLVVYRGSNDAWDGYGGGTLYTKDKTVPP
GIVERVKAKSEAAGIEWSRWSYNDNTCKPQTSETAELLREKYAKKLLLSE
GQQLQEQLTAVRGYAAQEVSEVEQSTLEKLEDLKQEYEVEVEQLGSDLAT
AFETELRLFEEGLANEASTVLNEATSVSTG*
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mRNA from alignment at H-canaliculatus_F_contig11177:374..4002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11177.1061.1 ID=mRNA_H-canaliculatus_F_contig11177.1061.1|Name=mRNA_H-canaliculatus_F_contig11177.1061.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3629bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11177:374..4002- (Hapterophycus canaliculatus Oshoro5f female)
AAGGTCCACTTCTTCAACAGCCCTAAGCCGGGGAAGCTGGTGGGCAAGCT
GAACTGGCGCATCAAGGAGCCCGACGGCGAGTTCTTCACGAGGGACGTCG
TACAGAAGTTCCAACAGGACCCGAAGAACGAGGCCCACCTGGTCAACAAG
GACAACGACTACCTCCACTACAGGGGTGAGAACGACCAAGAGCGGACGAG
CTGGTGTTGTTCCGAGTCGTCCTCCTCCCCGTTCTCCGCTCCTTTTTTGC
CGTGGGGTGGGAGTCTCCGCCTGCTGCTGTACCTCTTTTTGCCGCCGCAG
CAGTGTTGTGTACCTTCTTTTGTCGTTGTGCGCGTTTTGCCGCCCCACCC
ACCCACCGTTCGGCCTGCGTGTCATGTTGTTGTAGCACTCCCTGCGCCCT
TGCAGCAGCTCGCTCCTTGCCTCCGTCGGTGAAGCGGGTACGCCGGCCAC
TGGTGGCCCGATCCCTCGGCGCCCCCCCCCTCACGCCCTCGCGCCGAGAG
ACGAAGCCGAAGTCCCGCGACCGCCATGCTGTGACACCCCCCCTCCCTCC
CTCCCTTTCCCGCCGTGTGTGCCGCGTAGCGGTGCTTGTTCGACCTCGCG
TCGCTGCGTGCATGCGCGCCCGTTTCTTCCCGCCGGATGTACCCACGTAC
CCCCCCCGCCGCCCCCCGCCATCGCTGGATCTACCCACGCACCCCCTTCT
CGTCCCCTTGTGTCGCTGTTCGGACCCGCTTCTCGTCACCCACTCGCACG
TGCTGCTGCTTCCTGTACCCCCTCTCGTCCACTTGTTTCGCCGGACGCAC
CCCCTTCTGCCTCACCTACGATCGCTGAATGTACCCCTTTTCGTCCACCG
TCGCTCTCGGCATGGCGTCTCGCTTCGTCCCGCAGACGACTGGTACGTCC
TCGACTCCGAGCCGAACTCGCACGTTCTGGTGGTGTACCGGGGCAGCAAC
GACGCGTGGGACGGTTACGGCGGCGGCACCCTCTACACCAAGGTCGGTCG
TTGTGTTGAGAAACCACCGCCATGCCTAACCTTTCGGTCATGGCTTCGCC
TCTGTGTCAGCGGAAGCGGTGGCTTCGGTTCGTTCGCTGGGTGGATCGAT
GGGTGCATGGATGTCGCCGGCGGTCGCCCAAGCTCACGCGCCGCCTCGTG
TACGCGCAGGATAAGACCGTGCCGCCGGGGATCGTGGAGAGAGTCAAGGC
CAAGTCGGAGGCGGCCGGGATCGAGTGGAGCCGCTGGTCGTACAACGACA
ACACCTGCAAGCCACAGGTAATCGCGCTTGGTGGGCGCGAGACATGGCCC
GAGTCGGCATGAAATCGCCACCATGCGTCACACGGCGTGGAAGTGGCGTC
AAGTCTGGCCTCACTGCGCTCCGGGGGGGGGGTTGTAGCTGTGCGGACAT
CGGCGGGGAATCCGCGTTTGAAGTTTTTTCCGCGGAGAGAGCCAAGGACA
GAGTTTTTTTAAGGCGAAATGGGTGTTTTGGGTGATCCGTCCGGCAGCGG
CACGCCGACGACAACGGTGACAACTGACAGAATCGAAGGAAGGATAAGGA
TCTGATGTCGGCGATATTTACCCGGTGGCATACCGCCCTCCGTGCTCTCT
TGAGACAAAAAGAGTCGACAGCCCGGAAGAAAACAAGAAACACGCTCGGA
GACGGGACTCGGAAAAATCGTCTTGGATTCCTCCTACACTCGTAGCGAGG
GTTCAGTTCGGTGCGCCGGACGGGACAACAACGCTGTTCTTGACAGGGGT
AGGAAGTTGTTTTTGTGAGACGCTTGCCTCTAAGTCTTCGGAGACGTCAA
CGACATGGCCCGTTTTTTTTGTGTTTTGTCTCCTTGTGCTTTTTGCCAGA
CGAGCGAGACGGCGGAGCTGCTGCGGGAGAAATACGCCAAGAAATTGCTT
CTGTCGGAGGGGCAACAGCTACAGGTACACACGCGATGCGACAGGATCTG
ATAGTGACGTGGGGACCAATGCTGACAGGAATGGGGGCTTCGGGCTCCTA
AAGTTCATGTTTTGTTGGTGGCATTGGCTGGACCATGCAGTCAGCGCTGA
CTAGGCGGCCCGGTTGATTTGCTCGTGTCGCTTACAGGATACGCAACTTG
GTCTGGTGTACAGCTTTTGCTCCGACCCCCCCCCCCGGACAGCGTCCACG
CAGCCACGTCCTCCCACCGACCCAATGGTTCGAGGGAAGCAAGTTGCCGA
AGCGGCTACGTTGCAGCCTTCCCGTTGATCACGCGACGCACCGCCGTCCG
TCTTCCGCCTTACCTCCGCGCGTCTCGCGCCCCGGCCTGAACGAAACGTG
TCGCACTCCGATCGAAAAAACCGCAGGAGCAACTGACGGCGGTGCGAGGG
TACGCGGCGCAGGAGGTGAGCGAGGTGGAGCAGTCCACTCTGGAGAAGCT
GGAGGACCTCAAGCAGGAGTACGAGGTCGAGGTGGAGCAGCTCGGGAGCG
ATTTGGCGGTGAGCAGTGTACGCACGCGGTGCTTGGTTGGTGGCGTGTGC
GCTGCGCCAGCCAGCCAAGGCGGGCGCCTTGGGCAGAGCGCGGACCCTTT
TTTTTTCGAAGCAATGCCTATGTGAGCGTGAAGAGGACAGTTGCCGCAGC
AGTAGAAGCAGAAGCAGAAGCAGAAGCGACGGCGACAACTCCGACCCACG
ACCGCGGATGCTTCTCGTGCGGTACAATCTGCTTCTGTGCGTGTTTTTTT
TTGTAGTTTTCGGCTTTTGAGTGTCCCTAGGCCCTGAGGCAAGGACCCGC
AAGCTAGTCGATGGTGATGCAGGCGCATTCCACCGCAAGGAGCGCGGTGC
TCAGACCGTGGCTTTTCTTCGATCCTCCCAAAGTAGGCTGCTGAGGGCGC
TGGCTCATCGAAAGTAGTCCAGGTGCATACCCTGTGCTTGCCCGGTGTGT
ATCGATCTTGTTCATGGTGGCAGCAGTGTTTTTGTGTCGATGCGCCTTGG
CGGTCGGTTGTTGTTTGAGCTGCCGCCGTCTGTACTGGCGTCCCGCGTGT
TGCTCCAGCTGGTGGCGCAGCTAGGGTTGATAGTGTGGCCACACCTGATT
ACCCACACAAGGGACCACCACGCGTCATGCGTCTTGCGTCTCGTGTCCAA
GAGATCCGCCCGACGGCGTGTTGTATCGACCGTCACGTACCGTGATCGCG
GTGTCGGCTGTGATCGCCGTGTTGGACTCGCTCTCTTCTGGTGCTTTTTG
GCGCGAGGGCTGACTGTTGCTCGTTGTGCATGGGAGCCTGAATTTGACCT
ATGATACACCGGCGATCGCAACGGAGTGTAGCGGTGGCAGCGGTGGCAGC
GACAACGCAGACGGGAAAGGGCAGGAGAGGCACAGAGGTTAGTGCCACGG
CGGTGACCATGACTGCTGTGACGGTGACGCGGACAAGGGAAGCGACAGTG
AGAATGGGCCAACGGTATCGGAAAGGGCAGCGAAATCGATCATGTCGACG
ACCTTGTGACGATGAGGGAGACTCTTTGACGACGCCACCGACCACAATGA
TTTTGACAATGACCGCGGCGTTGGCGTTGACAGACGGCGTTCGAGACGGA
GCTGCGCTTGTTCGAGGAAGGACTGGCCAACGAGGCAAGCACCGTCCTGA
ACGAGGCCACCAGCGTGAGTACAGGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11177:374..4002-

>mRNA_H-canaliculatus_F_contig11177.1061.1 ID=mRNA_H-canaliculatus_F_contig11177.1061.1|Name=mRNA_H-canaliculatus_F_contig11177.1061.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1386bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11177:374..4002- (Hapterophycus canaliculatus Oshoro5f female)
AAGGTCCACTTCTTCAACAGCCCTAAGCCGGGGAAGCTGGTGGGCAAGCT
GAACTGGCGCATCAAGGAGCCCGACGGCGAGTTCTTCACGAGGGACGTCG
TACAGAAGTTCCAACAGGACCCGAAGAACGAGGCCCACCTGGTCAACAAG
GACAACGACTACCTCCACTACAGGGAAGGTCCACTTCTTCAACAGCCCTA
AGCCGGGGAAGCTGGTGGGCAAGCTGAACTGGCGCATCAAGGAGCCCGAC
GGCGAGTTCTTCACGAGGGACGTCGTACAGAAGTTCCAACAGGACCCGAA
GAACGAGGCCCACCTGGTCAACAAGGACAACGACTACCTCCACTACAGGG
ACGACTGGTACGTCCTCGACTCCGAGCCGAACTCGCACGTTCTGGTGGTG
TACCGGGGCAGCAACGACGCGTGGGACGGTTACGGCGGCGGCACCCTCTA
CACCAAGACGACTGGTACGTCCTCGACTCCGAGCCGAACTCGCACGTTCT
GGTGGTGTACCGGGGCAGCAACGACGCGTGGGACGGTTACGGCGGCGGCA
CCCTCTACACCAAGGATAAGACCGTGCCGCCGGGGATCGTGGAGAGAGTC
AAGGCCAAGTCGGAGGCGGCCGGGATCGAGTGGAGCCGCTGGTCGTACAA
CGACAACACCTGCAAGCCACAGGATAAGACCGTGCCGCCGGGGATCGTGG
AGAGAGTCAAGGCCAAGTCGGAGGCGGCCGGGATCGAGTGGAGCCGCTGG
TCGTACAACGACAACACCTGCAAGCCACAGACGAGCGAGACGGCGGAGCT
GCTGCGGGAGAAATACGCCAAGAAATTGCTTCTGTCGGAGGGGCAACAGC
TACAGACGAGCGAGACGGCGGAGCTGCTGCGGGAGAAATACGCCAAGAAA
TTGCTTCTGTCGGAGGGGCAACAGCTACAGGAGCAACTGACGGCGGTGCG
AGGGTACGCGGCGCAGGAGGTGAGCGAGGTGGAGCAGTCCACTCTGGAGA
AGCTGGAGGACCTCAAGCAGGAGTACGAGGTCGAGGTGGAGCAGCTCGGG
AGCGATTTGGCGGAGCAACTGACGGCGGTGCGAGGGTACGCGGCGCAGGA
GGTGAGCGAGGTGGAGCAGTCCACTCTGGAGAAGCTGGAGGACCTCAAGC
AGGAGTACGAGGTCGAGGTGGAGCAGCTCGGGAGCGATTTGGCGACGGCG
TTCGAGACGGAGCTGCGCTTGTTCGAGGAAGGACTGGCCAACGAGGCAAG
CACCGTCCTGAACGAGGCCACCAGCGTGAGTACAGGGTAGACGGCGTTCG
AGACGGAGCTGCGCTTGTTCGAGGAAGGACTGGCCAACGAGGCAAGCACC
GTCCTGAACGAGGCCACCAGCGTGAGTACAGGGTAG
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