mRNA_H-canaliculatus_F_contig11174.1059.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11174.1059.1
Unique NamemRNA_H-canaliculatus_F_contig11174.1059.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11174.1059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11174contigH-canaliculatus_F_contig11174:2232..2980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size379
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11174.1059.1prot_H-canaliculatus_F_contig11174.1059.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11174 2672..2980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928795.8904383-UTR-H-canaliculatus_F_contig11174:2231..22941622928795.8904383-UTR-H-canaliculatus_F_contig11174:2231..2294Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11174 2232..2294 +
1696845567.599804-UTR-H-canaliculatus_F_contig11174:2231..22941696845567.599804-UTR-H-canaliculatus_F_contig11174:2231..2294Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11174 2232..2294 +
1622928795.9092798-UTR-H-canaliculatus_F_contig11174:2664..26711622928795.9092798-UTR-H-canaliculatus_F_contig11174:2664..2671Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11174 2665..2671 +
1696845567.6123526-UTR-H-canaliculatus_F_contig11174:2664..26711696845567.6123526-UTR-H-canaliculatus_F_contig11174:2664..2671Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11174 2665..2671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928795.9228117-CDS-H-canaliculatus_F_contig11174:2671..29801622928795.9228117-CDS-H-canaliculatus_F_contig11174:2671..2980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11174 2672..2980 +
1696845567.6235836-CDS-H-canaliculatus_F_contig11174:2671..29801696845567.6235836-CDS-H-canaliculatus_F_contig11174:2671..2980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11174 2672..2980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11174.1059.1

>prot_H-canaliculatus_F_contig11174.1059.1 ID=prot_H-canaliculatus_F_contig11174.1059.1|Name=mRNA_H-canaliculatus_F_contig11174.1059.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MRVDPFTRRHRYEDIADDDGGIEGSAYSTHGAETSDRQASWVATLRRCGA
LLIAVAFLTTARSRLPGSGNARLSVERSLPDGTKVEQLWAGNRGGESLLL
TQV
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mRNA from alignment at H-canaliculatus_F_contig11174:2232..2980+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11174.1059.1 ID=mRNA_H-canaliculatus_F_contig11174.1059.1|Name=mRNA_H-canaliculatus_F_contig11174.1059.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=749bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11174:2232..2980+ (Hapterophycus canaliculatus Oshoro5f female)
ATCCATGCGTGCTCACTTCCCCAGCGCTGAGCGACTACCCCGAGCGAAGG
ATTACTAACGAAGGTGAGCTAAGACAATACTTGACAGGTCGAATTCGACT
TTTGTTCAGTGGTCGGATACGCTCCACAATGCCGAGACCCTTGAGTTTCA
AACGTAGACTATCCACCGTTCGTGAGGCAATCGAAGGAAAAACATTTGTG
CAGAGAGAGAGGCTAGAATACTGACTGACTCTTTCTTCAAAAATGCAGAC
ATGTACGATTCTAATACCGGTAAGCTCAGCGAGCGGCGAAGCTGCAGGCC
CGACTGGCGACATCGACGCTCAAAGACAGGGACCACAGAGTAGTGACATT
GCTCTTCCATTGCTTTTGTCATCGGGGAGCATCATCAGCCCGTCAACCTC
CTCGACCATGCTCCACCAACTGGTACGTTCCAGGTTCTTCATGAGGGTCG
ACCCTTTCACTCGAAGACACAGGTATGAGGATATTGCTGATGATGATGGA
GGCATCGAAGGAAGCGCGTACTCTACGCACGGGGCAGAGACGAGCGATAG
ACAGGCCTCGTGGGTAGCGACACTACGTCGGTGCGGTGCGCTGCTTATCG
CGGTTGCTTTTCTCACCACGGCAAGAAGCCGTCTTCCAGGGTCAGGCAAC
GCACGACTGTCCGTGGAAAGAAGCTTGCCCGATGGGACCAAAGTTGAGCA
ACTGTGGGCGGGGAATCGCGGTGGCGAAAGCTTGTTGTTGACACAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11174:2232..2980+

>mRNA_H-canaliculatus_F_contig11174.1059.1 ID=mRNA_H-canaliculatus_F_contig11174.1059.1|Name=mRNA_H-canaliculatus_F_contig11174.1059.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11174:2232..2980+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGGTCGACCCTTTCACTCGAAGACACAGGTATGAGGATATTGCTGA
TGATGATGGAGGCATCGAAGGAAGCGCGTACTCTACGCACGGGGCAGAGA
CGAGCGATAGACAGGCCTCGTGGGTAGCGACACTACGTCGGTGCGGTGCG
CTGCTTATCGCGGTTGCTTTTCTCACCACGGCAAGAAGCCGTCTTCCAGG
GTCAGGCAACGCACGACTGTCCGTGGAAAGAAGCTTGCCCGATGGGACCA
AAGTTGAGCAACTGTGGGCGGGGAATCGCGGTGGCGAAAGCTTGTTGTTG
ACACAGGTGATGAGGGTCGACCCTTTCACTCGAAGACACAGGTATGAGGA
TATTGCTGATGATGATGGAGGCATCGAAGGAAGCGCGTACTCTACGCACG
GGGCAGAGACGAGCGATAGACAGGCCTCGTGGGTAGCGACACTACGTCGG
TGCGGTGCGCTGCTTATCGCGGTTGCTTTTCTCACCACGGCAAGAAGCCG
TCTTCCAGGGTCAGGCAACGCACGACTGTCCGTGGAAAGAAGCTTGCCCG
ATGGGACCAAAGTTGAGCAACTGTGGGCGGGGAATCGCGGTGGCGAAAGC
TTGTTGTTGACACAGGTG
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