mRNA_H-canaliculatus_F_contig1117.1057.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1117.1057.1
Unique NamemRNA_H-canaliculatus_F_contig1117.1057.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1117.1057.1 vs. uniprot
Match: A0A6H5KZM6_9PHAE (Hflx-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZM6_9PHAE)

HSP 1 Score: 629 bits (1622), Expect = 9.160e-216
Identity = 380/561 (67.74%), Postives = 412/561 (73.44%), Query Frame = 1 
Query:    1 MTTPCHARRGSTRYPFPFLLLALPCTHAFFQPPQ-GLSARQQTGAAAGRLHRSSLAATWPSRSGSGDASAVAVGTVGRRRRVRRPCAVPALLGKNRKKRKGSVVSQDSPSWYDDDEEDALVEGNNGDAGVTTTAXXXXXXXXXXXXSLS--TGXXXXXXXXXXNINKANNQRPSTPEVISDDSLLPPLDDLDDDGNQIVLEPVWVEGETQGEKPIVETFGLNEALATAEDGIDIDNGIMMGAENLGDDDLLIPA--DGVLPGGLVNGVGPESWRNGMEVPDDDVLLGERFNMVGRGLDDMLMERSIRFYDPKVTGERERCYLVGLEASGWGMGNKKGTKGSYPESRAPADGKSMEGDDDDGWDEQQEEAFQQEKQIAYEARKEEREMRFTIEESMAELSELAGTAGLEVAGSTYQRVVEPNPRTYIGTGKVKEIKAAMNQLDVCTVIFDDELSPGQQRSLEVEFGGEAAGIKV------------------------LDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKLWTHLERQQGGVGLRGPGERQLEVDR 1596
            MT+    RR    YP   LLLALPCT AFFQ P  GLSA Q+TG A G       + TWP+    G A+A     VGRRRR RRP AVP L GK RKKR G+ VSQD                           XXXXXXXXXXXX      G             +    + S+   ++DD+LLPPLDD   DGNQIVLEPVWVEGETQGEKPIVE +GLN+ALA AEDGIDIDNG+M G  +  ++ LLIPA   GVLPGGL +GVGPESWRNGMEVPDDDV+LGERFN VGRGLDDMLMERSIRFYDPKVTGERERCYLVGLEASGWGMGNK+ TKGS+PE  A A   + EG +DDGW E+QE AFQ+EK++AYEARKEEREMRFT+EESMAELSELAGTAGLEVAGSTYQRV+EPNPRTYIGTGKVKEIK+AMNQL VCTVIFDDELSPGQQRSLEVEFGGEAAGIKV                        LDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTK+WTHLERQQGGVGLRGPGERQLEVDR
Sbjct:    1 MTSSWPTRRRRGTYPSQALLLALPCTLAFFQSPNAGLSALQRTGIA-GAASTRGASTTWPAERSGGLAAAA----VGRRRRARRPHAVPVLFGKGRKKR-GTAVSQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGESSGDSQEVRRDVEDRGDKGSSSSTLTDDALLPPLDD---DGNQIVLEPVWVEGETQGEKPIVEAYGLNDALAGAEDGIDIDNGMMAGGVS-DNEALLIPAADGGVLPGGLGDGVGPESWRNGMEVPDDDVVLGERFNTVGRGLDDMLMERSIRFYDPKVTGERERCYLVGLEASGWGMGNKRNTKGSFPEKGAAAGDGNGEGGEDDGWTEEQEAAFQEEKKLAYEARKEEREMRFTLEESMAELSELAGTAGLEVAGSTYQRVLEPNPRTYIGTGKVKEIKSAMNQLGVCTVIFDDELSPGQQRSLEVEFGGEAAGIKVGAGLARRPQLFADARLMALRLPSVLDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKMWTHLERQQGGVGLRGPGERQLEVDR 551
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BLAST of mRNA_H-canaliculatus_F_contig1117.1057.1 vs. uniprot
Match: A0A835ZAR9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR9_9STRA)

HSP 1 Score: 301 bits (771), Expect = 3.490e-92
Identity = 169/253 (66.80%), Postives = 192/253 (75.89%), Query Frame = 1 
Query:  868 RGLDDMLMERSIRFYDPKVTGERERCYLVGLEASGWGMGNKKGTKGSYPESRAPADGKSMEGDDDDGWDEQQEEAFQQEKQIAYEARKEEREMRFTIEESMAELSELAGTAGLEVAGSTYQRVVEPNPRTYIGTGKVKEIKAAMNQLDVCTVIFDDELSPGQQRSLEVEFGGEAAGIKVLDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKLWTHLERQQG----------GVGLRGPGERQLEVDR 1596
            R L+D+LMERS+RFYDPK+TGERE+ YLVGLEA G+GM  +   +   PE+ A               DE++EEA       A   R+++ E RFT+EES++ELSELAGTAGLEV GSTYQRVVEPNPRTYIGTGKVKE++ AM  LD  TVI D ELSPGQQRSLE EFGGE  GIKVLDRTALILDIFAQHA+TREGQ+QV+LALH+YRLPRLTKLWTHLERQ G          GVGLRGPGERQLEVDR
Sbjct:    6 RELEDVLMERSLRFYDPKLTGEREKAYLVGLEARGYGMSQRDKQR---PETYAGLT------------DEEREEAGA----AAARQRRQDWEDRFTLEESLSELSELAGTAGLEVVGSTYQRVVEPNPRTYIGTGKVKEVRRAMRALDCKTVIIDHELSPGQQRSLEAEFGGEEEGIKVLDRTALILDIFAQHARTREGQVQVELALHLYRLPRLTKLWTHLERQSGAAGSGGGKSGGVGLRGPGERQLEVDR 239
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BLAST of mRNA_H-canaliculatus_F_contig1117.1057.1 vs. uniprot
Match: A0A7S2SHM6_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHM6_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.360e-74
Identity = 145/249 (58.23%), Postives = 166/249 (66.67%), Query Frame = 1 
Query:  871 GLDDMLMERSIRFYDPKVTGERERCYLVGLEASGWGMGNKKGTKGSYPESRAPADGKSMEGDDDDGWDEQQEEAFQQEKQIAYEARKEEREMRFTIEESMAELSELAGTAGLEVAGSTYQRVVEPNPRTYIGTGKVKEIKAAMNQLDVCTVIFDDELSPGQQRSLEVEFGGEAAGIKVLDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKLWTHLERQQ-------GGVGLRGPGERQLEVDR 1596
            G++++LMER++R YDP+ T ERERC+LVGLE        K G       SR                                          F++EES+ ELSELAGTAGLEV GSTYQRV  PNPRTYIG+GKV+E++ +M  L  CTVI DDELSPGQQR+LE EFGGEAAGIKVLDRTALILDIFAQHA+T+EG LQV+LA+  YRLPRLTKLWTHLERQ        GGVGLRGPGERQLEVDR
Sbjct:   56 GINELLMERALRCYDPRFTEERERCFLVGLE-------QKTGRT-----SRT-----------------------------------------FSLEESLVELSELAGTAGLEVVGSTYQRVNMPNPRTYIGSGKVREVRRSMQALGCCTVILDDELSPGQQRNLENEFGGEAAGIKVLDRTALILDIFAQHARTKEGFLQVELAMQTYRLPRLTKLWTHLERQSAASGGGNGGVGLRGPGERQLEVDR 251
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BLAST of mRNA_H-canaliculatus_F_contig1117.1057.1 vs. uniprot
Match: A0A7S3UUC0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUC0_HETAK)

HSP 1 Score: 239 bits (611), Expect = 1.430e-67
Identity = 143/263 (54.37%), Postives = 167/263 (63.50%), Query Frame = 1 
Query:  829 DDVLLGERFNMVGRGLDDMLMERSIRFYDPKVTGERERCYLVGLEASGWGMGNKKGTKGSYPESRAPADGKSMEGDDDDGWDEQQEEAFQQEKQIAYEARKEEREMRFTIEESMAELSELAGTAGLEVAGSTYQRVVEPNPRTYIGTGKVKEIKAAMNQLDVCTVIFDDELSPGQQRSLEVEFGGEAAGIKVLDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKLWTHLERQQ-------GGVGLRGPGERQLEVDR 1596
            DD LL        R LDD+L+E+++RFYDP   GERE+ +LVG+E  G     KK                                 FQ      Y A     E  F++EES+ EL+EL  TAG+EV GST+QR+ E NPRTYIGTGKV+EIK+ M+     TVIFDDELSPGQQR+LE EFG   AGIKVLDRTALILDIFAQHA+T+EG+LQV LAL  YRLPRLTKLWTHLERQ        GGVGLRGPGE Q+E+DR
Sbjct:  179 DDSLLNSN-----RELDDILLEKALRFYDPNFVGEREKAFLVGVEVKG-----KK---------------------------------FQSTIAKEYGA-----EYEFSLEESLGELTELTATAGMEVVGSTFQRLQEVNPRTYIGTGKVQEIKSMMSTHSCKTVIFDDELSPGQQRNLEREFGEIKAGIKVLDRTALILDIFAQHARTKEGKLQVLLALATYRLPRLTKLWTHLERQSAGGMGSVGGVGLRGPGETQIEIDR 393
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BLAST of mRNA_H-canaliculatus_F_contig1117.1057.1 vs. uniprot
Match: A0A0G4F628_VITBC (Hflx-type G domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F628_VITBC)

HSP 1 Score: 234 bits (597), Expect = 5.350e-65
Identity = 141/271 (52.03%), Postives = 170/271 (62.73%), Query Frame = 1 
Query:  808 NGMEVPDDDVLLGERFNMVGRGLDDMLMERSIRFYDPKVTG--ERERCYLVGLEASGWGMGNKKGTKGSYPESRAPADGKSMEGDDDDGWDEQQEEAFQQEKQIAYEARKEEREMRFTIEESMAELSELAGTAGLEVAGSTYQRVVEPNPRTYIGTGKVKEIKAAMNQLDVCTVIFDDELSPGQQRSLEVEFGGEAAGIKVLDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKLWTHLERQQGG------VGLRGPGERQLEVDR 1596
            +G EV D D  +G       R LD++LMER+IR+YDP+ +    RE+C+LVGLE     M  + G++ S        DG S E +                               FT+EES+ ELSELAGTAGLEV GSTYQRV +PN +T+IG GKV EI+ +M  L   T I D EL+P QQ++LE  FGG   GIKVLDRTALILDIFAQHA+TREG+LQV+LAL  YRLPRLT+LWTHLERQ GG      VGLRGPGE Q+E DR
Sbjct:  110 DGGEVEDADASVGYI-----RDLDEILMERAIRYYDPRESHIKRREKCFLVGLE-----MKRQPGSRSS--------DGSSQEDE-------------------------------FTLEESLGELSELAGTAGLEVVGSTYQRVAKPNAKTFIGPGKVNEIRRSMQALGCKTAIIDAELTPAQQKNLEEAFGGIPGGIKVLDRTALILDIFAQHARTREGKLQVELALAQYRLPRLTRLWTHLERQVGGKGGEGSVGLRGPGESQIETDR 331
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BLAST of mRNA_H-canaliculatus_F_contig1117.1057.1 vs. uniprot
Match: A0A7S2XV83_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV83_9STRA)

HSP 1 Score: 221 bits (564), Expect = 8.730e-63
Identity = 112/154 (72.73%), Postives = 131/154 (85.06%), Query Frame = 1 
Query: 1141 EMRFTIEESMAELSELAGTAGLEVAGSTYQRVVEPNPRTYIGTGKVKEIKAAMNQLDVCTVIFDDELSPGQQRSLEVEFGGEAAGIKVLDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKLWTHLERQQG--GVGLRGPGERQLEVDR 1596
            E +F++EES+ ELSELAGTAG+EV GSTYQ++   N RT +G+GKV+EIKAAM   D CTVIFD+ELSP QQ++LE EFGGE A IKVLDRTALILDIFAQHA+T+EG+LQVDLAL  YRLPRLT++WTHLERQ G  GVGLRGPGE Q+E DR
Sbjct:   12 EYQFSMEESLGELSELAGTAGMEVVGSTYQKMRIQNVRTLVGSGKVQEIKAAMKAADCCTVIFDEELSPRQQKNLEQEFGGEKANIKVLDRTALILDIFAQHARTKEGKLQVDLALSEYRLPRLTRMWTHLERQSGAGGVGLRGPGETQIETDR 165
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BLAST of mRNA_H-canaliculatus_F_contig1117.1057.1 vs. uniprot
Match: A0A7R9YF74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF74_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.650e-59
Identity = 108/155 (69.68%), Postives = 127/155 (81.94%), Query Frame = 1 
Query: 1150 FTIEESMAELSELAGTAGLEVAGSTYQRVVEPNPRTYIGTGKVKEIKAAMNQLDVCTVIFDDELSPGQQRSLEVEFGGEAAGIKVLDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKLWTHLERQQGG------VGLRGPGERQLEVDR 1596
            F++  SM EL+ELA TAGL V G+  Q ++EPNPR+YIG+GKV+E+++AM  L   TVI D+ELSPGQQR+LEV FGGE AGIKVLDRTALILDIF+QHA T+EG LQV+LAL  YRLPRLT+LWTHLERQ GG      VGLRGPGERQ+EVDR
Sbjct:  120 FSLLASMGELAELARTAGLNVVGADSQSLLEPNPRSYIGSGKVREVRSAMKALRCQTVIVDEELSPGQQRNLEVSFGGEEAGIKVLDRTALILDIFSQHANTKEGILQVELALATYRLPRLTRLWTHLERQSGGSGKSGGVGLRGPGERQIEVDR 274
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BLAST of mRNA_H-canaliculatus_F_contig1117.1057.1 vs. uniprot
Match: A0A7S1U2P9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2P9_9STRA)

HSP 1 Score: 210 bits (535), Expect = 5.650e-58
Identity = 108/156 (69.23%), Postives = 126/156 (80.77%), Query Frame = 1 
Query: 1147 RFTIEESMAELSELAGTAGLEVAGSTYQRVVEPNPRTYIGTGKVKEIKAAMNQLDVCTVIFDDELSPGQQRSLEVEFGGEAAGIKVLDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKLWTHLERQQGG------VGLRGPGERQLEVDR 1596
            RF++  SM EL+ELA TAGL V G+  Q + EPNPR+YIGTGKV ++++AM  L   TVI D+ELSPGQQR+LE  FGGE AGIKVLDRTALILDIF+QHA+T+EG LQV+LAL  YRLPRLT+LWTHLERQ GG      VGLRGPGERQ+EVDR
Sbjct:   55 RFSLLASMGELAELARTAGLNVVGAESQSLQEPNPRSYIGTGKVSQVRSAMKALGCKTVILDEELSPGQQRNLETSFGGEEAGIKVLDRTALILDIFSQHARTKEGILQVELALASYRLPRLTRLWTHLERQSGGSGKAGGVGLRGPGERQIEVDR 210
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BLAST of mRNA_H-canaliculatus_F_contig1117.1057.1 vs. uniprot
Match: A0A7S2ZWL4_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZWL4_9RHOD)

HSP 1 Score: 206 bits (524), Expect = 2.270e-56
Identity = 106/151 (70.20%), Postives = 122/151 (80.79%), Query Frame = 1 
Query: 1150 FTIEESMAELSELAGTAGLEVAGSTYQRVVEPNPRTYIGTGKVKEIKAAMNQLDVCTVIFDDELSPGQQRSLEVEFGGEAAGIKVLDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKLWTHLERQ--QGGVGLRGPGERQLEVDR 1596
            F+I+ES+ EL +LA TAG+EV GS  Q++  P   TYIG+GKV+E+K AM      T + DDELSP QQR+LE  FGGE AGIKVLDRTALILDIFAQHA+TREGQLQV+LAL+ YRLPRLT+LWTHLERQ  QGGVGLRGPGE QLE DR
Sbjct:   78 FSIDESLEELGQLAETAGMEVVGSNTQKLNSPVTSTYIGSGKVREVKTAMAATGAKTCVLDDELSPAQQRTLERAFGGEQAGIKVLDRTALILDIFAQHARTREGQLQVELALYQYRLPRLTRLWTHLERQSGQGGVGLRGPGETQLESDR 228
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BLAST of mRNA_H-canaliculatus_F_contig1117.1057.1 vs. uniprot
Match: R7Q933_CHOCR (GTP-binding proten HflX n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q933_CHOCR)

HSP 1 Score: 202 bits (515), Expect = 2.150e-55
Identity = 105/151 (69.54%), Postives = 118/151 (78.15%), Query Frame = 1 
Query: 1150 FTIEESMAELSELAGTAGLEVAGSTYQRVVEPNPRTYIGTGKVKEIKAAMNQLDVCTVIFDDELSPGQQRSLEVEFGGEAAGIKVLDRTALILDIFAQHAKTREGQLQVDLALHMYRLPRLTKLWTHLERQQG--GVGLRGPGERQLEVDR 1596
            F I ES+ EL+ LA TAG+ V G   Q +  P   TYIGTGKV+E++  M   D CT IFD ELSP QQR+LE EFGGEA GIKVLDRTALILDIFAQHA T+EGQLQV+LAL+ YRLPRLT++WTHLERQ G  GVGLRGPGE QLEVDR
Sbjct:   20 FGIHESLDELARLAETAGMRVVGVITQSLQAPMSSTYIGTGKVQEVRREMEAEDCCTCIFDVELSPAQQRTLETEFGGEAKGIKVLDRTALILDIFAQHAATKEGQLQVELALYQYRLPRLTRMWTHLERQSGAGGVGLRGPGETQLEVDR 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1117.1057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZM6_9PHAE9.160e-21667.74Hflx-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A835ZAR9_9STRA3.490e-9266.80P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2SHM6_9STRA1.360e-7458.23Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S3UUC0_HETAK1.430e-6754.37Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4F628_VITBC5.350e-6552.03Hflx-type G domain-containing protein n=2 Tax=Vitr... [more]
A0A7S2XV83_9STRA8.730e-6372.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YF74_9STRA1.650e-5969.68Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1U2P9_9STRA5.650e-5869.23Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2ZWL4_9RHOD2.270e-5670.20Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
R7Q933_CHOCR2.150e-5569.54GTP-binding proten HflX n=1 Tax=Chondrus crispus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1117contigH-canaliculatus_F_contig1117:25062..29673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score637.1
Seed ortholog evalue7.3e-180
Seed eggNOG ortholog2880.D7G4N1
KEGG koko:K03665
GOsGO:0000226,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0034622,GO:0035082,GO:0036158,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.ribosome binding
EggNOG OGsCOG2262@1,KOG0410@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPHflX, plastid HflX GTPase
Ec32 orthologEc-00_007740.1
Exons7
Model size1599
Cds size1599
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928795.6595695-CDS-H-canaliculatus_F_contig1117:25061..255271622928795.6595695-CDS-H-canaliculatus_F_contig1117:25061..25527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 25062..25527 +
1696845567.5059009-CDS-H-canaliculatus_F_contig1117:25061..255271696845567.5059009-CDS-H-canaliculatus_F_contig1117:25061..25527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 25062..25527 +
1622928795.6808023-CDS-H-canaliculatus_F_contig1117:25590..260451622928795.6808023-CDS-H-canaliculatus_F_contig1117:25590..26045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 25591..26045 +
1696845567.5160391-CDS-H-canaliculatus_F_contig1117:25590..260451696845567.5160391-CDS-H-canaliculatus_F_contig1117:25590..26045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 25591..26045 +
1622928795.6963778-CDS-H-canaliculatus_F_contig1117:26706..268181622928795.6963778-CDS-H-canaliculatus_F_contig1117:26706..26818Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 26707..26818 +
1696845567.5239925-CDS-H-canaliculatus_F_contig1117:26706..268181696845567.5239925-CDS-H-canaliculatus_F_contig1117:26706..26818Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 26707..26818 +
1622928795.7153761-CDS-H-canaliculatus_F_contig1117:27675..277641622928795.7153761-CDS-H-canaliculatus_F_contig1117:27675..27764Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 27676..27764 +
1696845567.5321448-CDS-H-canaliculatus_F_contig1117:27675..277641696845567.5321448-CDS-H-canaliculatus_F_contig1117:27675..27764Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 27676..27764 +
1622928795.7278717-CDS-H-canaliculatus_F_contig1117:28100..282531622928795.7278717-CDS-H-canaliculatus_F_contig1117:28100..28253Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 28101..28253 +
1696845567.5429592-CDS-H-canaliculatus_F_contig1117:28100..282531696845567.5429592-CDS-H-canaliculatus_F_contig1117:28100..28253Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 28101..28253 +
1622928795.753944-CDS-H-canaliculatus_F_contig1117:28919..291171622928795.753944-CDS-H-canaliculatus_F_contig1117:28919..29117Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 28920..29117 +
1696845567.5509145-CDS-H-canaliculatus_F_contig1117:28919..291171696845567.5509145-CDS-H-canaliculatus_F_contig1117:28919..29117Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 28920..29117 +
1622928795.767723-CDS-H-canaliculatus_F_contig1117:29547..296731622928795.767723-CDS-H-canaliculatus_F_contig1117:29547..29673Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 29548..29673 +
1696845567.5604682-CDS-H-canaliculatus_F_contig1117:29547..296731696845567.5604682-CDS-H-canaliculatus_F_contig1117:29547..29673Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1117 29548..29673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1117.1057.1prot_H-canaliculatus_F_contig1117.1057.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1117 25062..29673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1117.1057.1

>prot_H-canaliculatus_F_contig1117.1057.1 ID=prot_H-canaliculatus_F_contig1117.1057.1|Name=mRNA_H-canaliculatus_F_contig1117.1057.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=533bp
MTTPCHARRGSTRYPFPFLLLALPCTHAFFQPPQGLSARQQTGAAAGRLH
RSSLAATWPSRSGSGDASAVAVGTVGRRRRVRRPCAVPALLGKNRKKRKG
SVVSQDSPSWYDDDEEDALVEGNNGDAGVTTTAATAAVRAAAAAGSLSTG
TTATSNRSNRNINKANNQRPSTPEVISDDSLLPPLDDLDDDGNQIVLEPV
WVEGETQGEKPIVETFGLNEALATAEDGIDIDNGIMMGAENLGDDDLLIP
ADGVLPGGLVNGVGPESWRNGMEVPDDDVLLGERFNMVGRGLDDMLMERS
IRFYDPKVTGERERCYLVGLEASGWGMGNKKGTKGSYPESRAPADGKSME
GDDDDGWDEQQEEAFQQEKQIAYEARKEEREMRFTIEESMAELSELAGTA
GLEVAGSTYQRVVEPNPRTYIGTGKVKEIKAAMNQLDVCTVIFDDELSPG
QQRSLEVEFGGEAAGIKVLDRTALILDIFAQHAKTREGQLQVDLALHMYR
LPRLTKLWTHLERQQGGVGLRGPGERQLEVDR*
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mRNA from alignment at H-canaliculatus_F_contig1117:25062..29673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1117.1057.1 ID=mRNA_H-canaliculatus_F_contig1117.1057.1|Name=mRNA_H-canaliculatus_F_contig1117.1057.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1117:25062..29673+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGACTCCATGTCATGCACGACGGGGTAGCACTCGTTACCCTTTCCC
CTTCCTCCTCCTTGCTCTTCCCTGCACCCACGCCTTCTTTCAACCGCCCC
AAGGCTTGTCGGCACGTCAGCAGACCGGAGCCGCTGCTGGGCGACTCCAC
CGCAGTAGCCTCGCCGCAACTTGGCCCTCTAGAAGCGGAAGCGGTGATGC
TTCAGCAGTGGCCGTGGGCACGGTGGGACGACGACGGCGCGTACGGCGGC
CTTGTGCTGTGCCAGCTCTCCTCGGCAAGAACCGGAAGAAGCGGAAGGGG
TCGGTTGTGTCGCAGGATTCGCCCAGCTGGTACGATGACGATGAAGAAGA
TGCCCTCGTGGAAGGCAACAACGGGGATGCAGGCGTGACCACGACCGCAG
CAACGGCGGCGGTCAGGGCAGCTGCCGCCGCAGGGTCGCTATCAACAGGA
ACAACAGCCACCTCGAGTGCAACACCGGTAGCGGAAATGAAACAGCCAGC
AGCGGCAGCAGGTACCGACAGCATCGAAGACCGCAGTAATCGCAACATCA
ACAAGGCCAACAACCAACGGCCTTCAACCCCCGAGGTAATCTCCGACGAC
TCGCTCCTCCCGCCCCTCGACGACCTCGACGATGACGGCAACCAGATTGT
CCTCGAGCCGGTCTGGGTGGAAGGAGAGACTCAGGGGGAGAAACCCATCG
TGGAAACGTTCGGGCTGAACGAAGCCCTCGCCACGGCAGAAGATGGCATC
GACATCGACAACGGCATCATGATGGGCGCTGAGAACCTCGGCGACGACGA
TCTCCTCATCCCCGCCGACGGGGTGTTGCCAGGTGGCTTGGTGAACGGGG
TGGGGCCCGAGAGCTGGAGGAACGGCATGGAGGTCCCGGATGACGATGTG
CTGCTCGGGGAGAGGTTCAACATGGTGGGCAGGGGCCTGGACGACATGCT
GATGGAGAGATCCATTCGTTTTTATGACCCGAAGGTATCGAGTCTAACAC
GGCACAACTTGACGAATCCAGCTGGACGTACAAGAAGTAGACGGCTACCC
TAGGCTGGTCCAGGTTGTCGTGTGTTCGTCGCGGCCCATGACAAGATGGT
GCGCTCATTAGCCGATACCTGAAGATTCAATGCCATGCAAGAGCTTCCGA
GACGTTAGTGCGGTAGAATTGAGAGAGAGGGAGGGCGGGATTCTGGCTAT
GGATCTTCGTCTCGAGAGAAGGCACCACACGCTTGTGAAAAGCGGAGTTT
ATCAATGTTAAAAGCTGAGTTTATCACAAGTACAACGGGTGAGGGGTGGA
GAGACGTCTCCCTGGAAAGGTGGTCATAAGACTCACTGCTTGCTGTAGCT
TACAGCACATGTCACGCTAAAAATTCAACACTGGCTCTGCTTGTGGGCGT
ATTTTTGTGAGTGAAAGATGACCCCAGTCAGCCCCTCAACACGCGTCTTT
ACACCAGCTAGACAGCTACTCAGTATCGCTGGATGGCCCGACACATCTCG
TTGTATGACAAGAAAATCCAAACTCTAGATGTTTGTGATGCCGTGTTGTG
GGGGCTTCCATCACTTATCAACGGCTATCCCCCCGCCCCGCGGCTCCTCT
CCTGTATTTTGTCGTTTGGCCGTTCGGAAATTTCCATGGTGGCAGGTGAC
GGGAGAGCGTGAGAGGTGTTATCTCGTAGGGCTGGAGGCCAGCGGCTGGG
GCATGGGCAATAAGAAGGGGACGAAGGGGTCGTACCCTGAGTCAAGAGCA
CCCGCCGGTGAGGCTTGACCTGCGCGATTTCAACCCTCTATTTTGTCCTG
ATCCGCGATACGTACCTTGAAAAACCTGTATGTTTTATACCTGCTGTGGT
GAGTTCGACGGCAGTGTGTACCGCTGACTGCGGATGGCTGCTGTGTTTCC
AATCTGTGTCCCTGATGGTTCTCGCCTGTGATGTATCGACACCACACCCG
TGTGAGCGACAGCTTCAGCACGACCTTCCCGTTCTACTTTCAATCCTTAT
TTCGATTCTTGCAGGCGTTACACATGGGCACGGTGGTTGAGGTGTTTTTT
AAGGCTTTCCTCAGCTTGCGAGCAGCATGGCGCGAACGGTAATAAAACAA
CAGCTGCAGGTGTTCGAGTCAGCCACAAATCTATTGAAGAAAAACATAAT
TGAGGACACAGGGTACCCTTCGTAAAGTATGATGCAGGTCGTGGTAGTAT
TCACCCACTACCGGGGGCTGCTAGTTTCCTTCGTGATGTTTAGGCGAAGA
GAGAGGTTCACACAAAGAGTGCCGGAGAGAGGGGAGCCTAAAGACTCCCC
GCTTCTCATCTCAGCAAGTTGTGCTTAGAAGAGTCAGATCTCTTTCTGGG
TTATCGTCAACCCAACGGATTGAAAAGATCCCCGACTAAGATCCACTCCT
CCTTTACTTTGTAATGGCACTCCGGTTACTACTTCTTGCACCTACCATCC
ACATAATTTACATGTAGACGCGATGATCGAAATATCGCAGTGTGATCGCT
GAACGACAAAGCAACGTGCCACCTATTCTGTCGGTTTTCCAATCTGTGCG
TGGGGTGGTCAACCTTCTTGCCTTCGTCACGGATTTCACGATGCGGTTGG
TAATGCGCAAGCAGACGGCAAGAGCATGGAGGGAGATGACGATGACGGCT
GGGACGAGCAGCAGGAAGAGGCGTTTCAACAGGAAAAGCAAATTGCTTAC
GAGGTACTTGACTACTTAATTGTGTGCGCGACCGTTGCCACTCGTCCACT
AGTCGAGGTACGAGGAAGAAAGTCTAGCCCGCTCGTGAGGCTCCCCGTAT
CGATCTACGCTGATTTTGGAGGGCTGGAGTCACCGGACCGGTCGGACTAC
TACGACTCCCCGAGAGCTTCAGCAAATACTTCGTGAGAGAACCTTGTTTC
TCGCATATCTGCATCTCTCCGTGGATACGACTCGCTCTCTACCCGCCCGC
CCACCGCCCGTCCAATCTGGGTCGTCTTTGCCCACGCAGCTGAACTCATC
TCGAATCCGACCCAATCGAACCAACTGCGATGAATTAAGGCGCGAAAAGA
GGAGCGAGAGATGCGCTTCACCATCGAGGAGTCGATGGCCGAACTCAGCG
AGCTGGCGGGCACGGCGGGTCTGGAAGTAGCCGGATCCACCTACCAGAGG
GTGGTGGAGCCCAACCCACGCACCTACATCGGGACCGGAAAGGTGGAACC
ACACGTTTGCTCTTATTTGTCGTACGCCCGCCAACACGCTAATTTGTAAT
CTGTCCGAGAGCGGTCTGCGCCAGCGTAGACCAGAGGTTGCCGCACGTGT
GAAAGCGCATACTGTAGCGCGCACAAGGAAGGACTAGTGCAGGCAATAGA
CGAGATTGTGGTTCGTGAGATTTCAGAGCGAAAGGTGCGATGCTGTCACT
TGGAAGTGTTGTGTCTGGCTTGAAGTTCTGACCTTTTGGAAGTGCGTTTT
TTGGTTTGCGCTTAAAATTTGTGGTAAGCACTCATCCCCCCGTCCAGATG
AAGGGGGAACGTGTTCAGGGGTGAGAACTGCCGCAAATTGCAATCTGAAG
TAGAATTAATGGTCGTGTGCGTTTCACAAGGCACACGAAAACGAACAGCG
CAAACCTCCCATCTCCGGTGTGACACGCTGCATCGTGGAGGATATGATAT
TCCTTGATCCCGCCCTCATTCCCACTAACCCCTCAACGGTTTTCAGAAAG
TGAGCCAATCTGAATTTGATATGTTCCAGGCTAACGCTCTACAGTCAAGT
CGCGGAAACATCAAACAGTCAATTTTGACCCCGACGTCCATCCCAACACC
ACCTTCTGCTCCGGCCCGCTCGCCCCCTCCCTCGCCCCTCCTGCCCTTGA
TATCGTAGGTGAAAGAGATCAAGGCGGCTATGAACCAGCTGGACGTGTGC
ACCGTGATCTTCGACGACGAGCTTAGCCCTGGTCAGCAGCGTAGCCTGGA
GGTGGAGTTCGGTGGTGAGGCGGCGGGTATTAAGGTGCTGGACCGCACTG
CCCTTATCCTCGACATCTTCGCGCAGCACGCCAAGACGAGGGAGGGGCAG
CTCCAGGTATCTGCGAATGGAATCATGGAGCGTTTCTTGTTCTTGTTGCC
TTGTTTCTTTCGATTTCAATTGCAAAGGTAACGGAAAGGGAGGCAGAGAC
ACTCGGCCAGGTGTGATGCCCTTTTGGTGTCTTCTGGCCAGGCCGCTGCA
GACCCAAACAGCTTTTTTGTCGAGCGGGGAGCAGATCAATCGCGAGGCAT
GTGAAGGACGAGCGGTTGTTTGGCCTAACAGAGCAGGGATCAAAAGCGAA
GCGTCATAGCCCCGAGTCTGCCGCAACGTGAAAGCTCACAGAATCTACCC
CATGGAGGGGGCCGAATCGCGATTGAGCGTCAGTTTCCTCTCCACTGCCG
CGTATGAAGCACCCCTGTCGTTCTCCGTCTCTTTGCTGCCCCGCTTGCGT
GCGCGCGTGTTTCTGCAAATGGGCGCTCGTGTACAGGTGGATCTGGCGCT
GCACATGTACCGATTGCCGCGGTTGACCAAGCTGTGGACTCACCTGGAGA
GGCAGCAAGGAGGTGTTGGGCTCAGGGGACCCGGGGAGCGTCAACTTGAA
GTCGACAGGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1117:25062..29673+

>mRNA_H-canaliculatus_F_contig1117.1057.1 ID=mRNA_H-canaliculatus_F_contig1117.1057.1|Name=mRNA_H-canaliculatus_F_contig1117.1057.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3198bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1117:25062..29673+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGACTCCATGTCATGCACGACGGGGTAGCACTCGTTACCCTTTCCC
CTTCCTCCTCCTTGCTCTTCCCTGCACCCACGCCTTCTTTCAACCGCCCC
AAGGCTTGTCGGCACGTCAGCAGACCGGAGCCGCTGCTGGGCGACTCCAC
CGCAGTAGCCTCGCCGCAACTTGGCCCTCTAGAAGCGGAAGCGGTGATGC
TTCAGCAGTGGCCGTGGGCACGGTGGGACGACGACGGCGCGTACGGCGGC
CTTGTGCTGTGCCAGCTCTCCTCGGCAAGAACCGGAAGAAGCGGAAGGGG
TCGGTTGTGTCGCAGGATTCGCCCAGCTGGTACGATGACGATGAAGAAGA
TGCCCTCGTGGAAGGCAACAACGGGGATGCAGGCGTGACCACGACCGCAG
CAACGGCGGCGGTCAGGGCAGCTGCCGCCGCAGGGTCGCTATCAACAGGA
ACAACAGCCACCTCGAATGACGACTCCATGTCATGCACGACGGGGTAGCA
CTCGTTACCCTTTCCCCTTCCTCCTCCTTGCTCTTCCCTGCACCCACGCC
TTCTTTCAACCGCCCCAAGGCTTGTCGGCACGTCAGCAGACCGGAGCCGC
TGCTGGGCGACTCCACCGCAGTAGCCTCGCCGCAACTTGGCCCTCTAGAA
GCGGAAGCGGTGATGCTTCAGCAGTGGCCGTGGGCACGGTGGGACGACGA
CGGCGCGTACGGCGGCCTTGTGCTGTGCCAGCTCTCCTCGGCAAGAACCG
GAAGAAGCGGAAGGGGTCGGTTGTGTCGCAGGATTCGCCCAGCTGGTACG
ATGACGATGAAGAAGATGCCCTCGTGGAAGGCAACAACGGGGATGCAGGC
GTGACCACGACCGCAGCAACGGCGGCGGTCAGGGCAGCTGCCGCCGCAGG
GTCGCTATCAACAGGAACAACAGCCACCTCGAACCGCAGTAATCGCAACA
TCAACAAGGCCAACAACCAACGGCCTTCAACCCCCGAGGTAATCTCCGAC
GACTCGCTCCTCCCGCCCCTCGACGACCTCGACGATGACGGCAACCAGAT
TGTCCTCGAGCCGGTCTGGGTGGAAGGAGAGACTCAGGGGGAGAAACCCA
TCGTGGAAACGTTCGGGCTGAACGAAGCCCTCGCCACGGCAGAAGATGGC
ATCGACATCGACAACGGCATCATGATGGGCGCTGAGAACCTCGGCGACGA
CGATCTCCTCATCCCCGCCGACGGGGTGTTGCCAGGTGGCTTGGTGAACG
GGGTGGGGCCCGAGAGCTGGAGGAACGGCATGGAGGTCCCGGATGACGAT
GTGCTGCTCGGGGAGAGGTTCAACATGGTGGGCAGGGGCCTGGACGACAT
GCTGATGGAGAGATCCATTCGTTTTTATGACCCGAAGACCGCAGTAATCG
CAACATCAACAAGGCCAACAACCAACGGCCTTCAACCCCCGAGGTAATCT
CCGACGACTCGCTCCTCCCGCCCCTCGACGACCTCGACGATGACGGCAAC
CAGATTGTCCTCGAGCCGGTCTGGGTGGAAGGAGAGACTCAGGGGGAGAA
ACCCATCGTGGAAACGTTCGGGCTGAACGAAGCCCTCGCCACGGCAGAAG
ATGGCATCGACATCGACAACGGCATCATGATGGGCGCTGAGAACCTCGGC
GACGACGATCTCCTCATCCCCGCCGACGGGGTGTTGCCAGGTGGCTTGGT
GAACGGGGTGGGGCCCGAGAGCTGGAGGAACGGCATGGAGGTCCCGGATG
ACGATGTGCTGCTCGGGGAGAGGTTCAACATGGTGGGCAGGGGCCTGGAC
GACATGCTGATGGAGAGATCCATTCGTTTTTATGACCCGAAGGTGACGGG
AGAGCGTGAGAGGTGTTATCTCGTAGGGCTGGAGGCCAGCGGCTGGGGCA
TGGGCAATAAGAAGGGGACGAAGGGGTCGTACCCTGAGTCAAGAGCACCC
GCCGGTGACGGGAGAGCGTGAGAGGTGTTATCTCGTAGGGCTGGAGGCCA
GCGGCTGGGGCATGGGCAATAAGAAGGGGACGAAGGGGTCGTACCCTGAG
TCAAGAGCACCCGCCGACGGCAAGAGCATGGAGGGAGATGACGATGACGG
CTGGGACGAGCAGCAGGAAGAGGCGTTTCAACAGGAAAAGCAAATTGCTT
ACGAGACGGCAAGAGCATGGAGGGAGATGACGATGACGGCTGGGACGAGC
AGCAGGAAGAGGCGTTTCAACAGGAAAAGCAAATTGCTTACGAGGCGCGA
AAAGAGGAGCGAGAGATGCGCTTCACCATCGAGGAGTCGATGGCCGAACT
CAGCGAGCTGGCGGGCACGGCGGGTCTGGAAGTAGCCGGATCCACCTACC
AGAGGGTGGTGGAGCCCAACCCACGCACCTACATCGGGACCGGAAAGGCG
CGAAAAGAGGAGCGAGAGATGCGCTTCACCATCGAGGAGTCGATGGCCGA
ACTCAGCGAGCTGGCGGGCACGGCGGGTCTGGAAGTAGCCGGATCCACCT
ACCAGAGGGTGGTGGAGCCCAACCCACGCACCTACATCGGGACCGGAAAG
GTGAAAGAGATCAAGGCGGCTATGAACCAGCTGGACGTGTGCACCGTGAT
CTTCGACGACGAGCTTAGCCCTGGTCAGCAGCGTAGCCTGGAGGTGGAGT
TCGGTGGTGAGGCGGCGGGTATTAAGGTGCTGGACCGCACTGCCCTTATC
CTCGACATCTTCGCGCAGCACGCCAAGACGAGGGAGGGGCAGCTCCAGGT
GAAAGAGATCAAGGCGGCTATGAACCAGCTGGACGTGTGCACCGTGATCT
TCGACGACGAGCTTAGCCCTGGTCAGCAGCGTAGCCTGGAGGTGGAGTTC
GGTGGTGAGGCGGCGGGTATTAAGGTGCTGGACCGCACTGCCCTTATCCT
CGACATCTTCGCGCAGCACGCCAAGACGAGGGAGGGGCAGCTCCAGGTGG
ATCTGGCGCTGCACATGTACCGATTGCCGCGGTTGACCAAGCTGTGGACT
CACCTGGAGAGGCAGCAAGGAGGTGTTGGGCTCAGGGGACCCGGGGAGCG
TCAACTTGAAGTCGACAGGTAAGTGGATCTGGCGCTGCACATGTACCGAT
TGCCGCGGTTGACCAAGCTGTGGACTCACCTGGAGAGGCAGCAAGGAGGT
GTTGGGCTCAGGGGACCCGGGGAGCGTCAACTTGAAGTCGACAGGTAA
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